data_3H1H # _model_server_result.job_id '_dwG24izZKiVlg9w6ugSjg' _model_server_result.datetime_utc '2025-06-19 22:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":3091}' # _entry.id 3H1H # _exptl.entry_id 3H1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 18 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1H _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 IA N N ? 18 JA N N ? 18 SA N N ? 18 AB N N ? 18 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 QA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 RA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 QA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 RA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3H1H _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 UNL A 1 3284 3284 UNL UNL . V 11 UNL A 1 3231 3231 UNL UNL . W 11 UNL A 1 3289 3289 UNL UNL . X 12 HEM C 1 501 501 HEM HEM . Y 12 HEM C 1 502 502 HEM HEM . Z 13 UQ C 1 2002 2002 UQ UQ . AA 14 CDL C 1 2004 2004 CDL CDL . BA 15 PEE C 1 2007 2007 PEE PEE . CA 15 PEE C 1 2008 2008 PEE PEE . DA 16 GOL C 1 2011 2011 GOL GOL . EA 11 UNL C 1 3287 3287 UNL UNL . FA 11 UNL C 1 3288 3288 UNL UNL . GA 17 HEC D 1 501 501 HEC HEC . HA 14 CDL D 1 2003 2003 CDL CDL . IA 18 BOG D 1 2009 2009 BOG BOG . JA 18 BOG D 1 2091 2091 BOG BOG . KA 19 FES E 1 501 501 FES FES . LA 15 PEE E 1 2005 2005 PEE PEE . MA 11 UNL N 1 3290 3290 UNL UNL . NA 11 UNL N 1 3291 3291 UNL UNL . OA 15 PEE N 1 3008 3008 PEE PEE . PA 11 UNL N 1 4231 4231 UNL UNL . QA 12 HEM P 1 501 501 HEM HEM . RA 12 HEM P 1 502 502 HEM HEM . SA 18 BOG P 1 2010 2010 BOG BOG . TA 11 UNL P 1 3286 3286 UNL UNL . UA 13 UQ P 1 3002 3002 UQ UQ . VA 14 CDL P 1 3004 3004 CDL CDL . WA 15 PEE P 1 3007 3007 PEE PEE . XA 16 GOL P 1 3011 3011 GOL GOL . YA 17 HEC Q 1 501 501 HEC HEC . ZA 14 CDL Q 1 3003 3003 CDL CDL . AB 18 BOG Q 1 3009 3009 BOG BOG . BB 18 BOG Q 1 3091 3091 BOG BOG . CB 19 FES R 1 501 501 FES FES . DB 15 PEE R 1 3005 3005 PEE PEE . EB 20 HOH C 1 381 381 HOH HOH . EB 20 HOH C 2 382 382 HOH HOH . EB 20 HOH C 3 383 383 HOH HOH . EB 20 HOH C 4 384 384 HOH HOH . EB 20 HOH C 5 385 385 HOH HOH . EB 20 HOH C 6 386 386 HOH HOH . EB 20 HOH C 7 1008 1008 HOH HOH . EB 20 HOH C 8 1238 1238 HOH HOH . FB 20 HOH E 1 1289 1289 HOH HOH . GB 20 HOH P 1 381 381 HOH HOH . GB 20 HOH P 2 382 382 HOH HOH . GB 20 HOH P 3 383 383 HOH HOH . GB 20 HOH P 4 384 384 HOH HOH . GB 20 HOH P 5 385 385 HOH HOH . GB 20 HOH P 6 386 386 HOH HOH . GB 20 HOH P 7 387 387 HOH HOH . GB 20 HOH P 8 959 959 HOH HOH . GB 20 HOH P 9 1239 1239 HOH HOH . HB 20 HOH R 1 1230 1230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . BB 18 21.035 146.779 116.006 1 196.73 ? C1 BOG 3091 Q 1 HETATM 2 O O1 BOG . . . BB 18 20.624 148.071 116.379 1 196.29 ? O1 BOG 3091 Q 1 HETATM 3 C C2 BOG . . . BB 18 20.315 145.677 116.882 1 196.78 ? C2 BOG 3091 Q 1 HETATM 4 O O2 BOG . . . BB 18 20.597 145.85 118.274 1 196.81 ? O2 BOG 3091 Q 1 HETATM 5 C C3 BOG . . . BB 18 20.772 144.275 116.427 1 196.43 ? C3 BOG 3091 Q 1 HETATM 6 O O3 BOG . . . BB 18 20.132 143.266 117.202 1 196.27 ? O3 BOG 3091 Q 1 HETATM 7 C C4 BOG . . . BB 18 20.442 144.107 114.917 1 196.21 ? C4 BOG 3091 Q 1 HETATM 8 O O4 BOG . . . BB 18 20.848 142.809 114.461 1 195.85 ? O4 BOG 3091 Q 1 HETATM 9 C C5 BOG . . . BB 18 21.16 145.239 114.08 1 196.16 ? C5 BOG 3091 Q 1 HETATM 10 O O5 BOG . . . BB 18 20.757 146.582 114.568 1 196.46 ? O5 BOG 3091 Q 1 HETATM 11 C C6 BOG . . . BB 18 20.841 145.16 112.563 1 195.88 ? C6 BOG 3091 Q 1 HETATM 12 O O6 BOG . . . BB 18 22.012 145.101 111.741 1 195.7 ? O6 BOG 3091 Q 1 HETATM 13 C C1' BOG . . . BB 18 21.574 148.93 117.061 1 195.53 ? C1' BOG 3091 Q 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #