data_3H1I # _model_server_result.job_id xPGT-hEa3xKhU5wndxhOoQ _model_server_result.datetime_utc '2024-11-05 08:01:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":2001}' # _entry.id 3H1I # _exptl.entry_id 3H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.65 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STIGMATELLIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1I _cell.length_a 174.693 _cell.length_b 181.666 _cell.length_c 240.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C30 H42 O7' _chem_comp.formula_weight 514.65 _chem_comp.id SMA _chem_comp.mon_nstd_flag . _chem_comp.name 'STIGMATELLIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7M O7 SMA sing 1043 n n O7 C7 SMA sing 1044 n n O8 C8 SMA sing 1045 n n C7 C8 SMA doub 1046 n y C7 C6 SMA sing 1047 n y C8 C8A SMA sing 1048 n y C6 C5 SMA doub 1049 n y C8A O1 SMA sing 1050 n n C8A C4A SMA doub 1051 n y O1 C2 SMA sing 1052 n n C22 C11 SMA sing 1053 n n C9 C2 SMA sing 1054 n n C9 C10 SMA sing 1055 n n C5 C4A SMA sing 1056 n y C5 O5 SMA sing 1057 n n C4A C4 SMA sing 1058 n n C2 C3 SMA doub 1059 n n C5M O5 SMA sing 1060 n n C3 C4 SMA sing 1061 n n C3 C3M SMA sing 1062 n n C4 O4 SMA doub 1063 n n C11 C10 SMA sing 1064 n n C11 C12 SMA sing 1065 n n C24 C13 SMA sing 1066 n n C12 C13 SMA sing 1067 n n C12 O12 SMA sing 1068 n n C13 C14 SMA sing 1069 n n O12 C23 SMA sing 1070 n n O14 C25 SMA sing 1071 n n O14 C14 SMA sing 1072 n n C14 C15 SMA sing 1073 n n C15 C16 SMA doub 1074 e n C16 C17 SMA sing 1075 n n C17 C18 SMA doub 1076 e n C18 C19 SMA sing 1077 n n C20 C19 SMA doub 1078 e n C20 C21 SMA sing 1079 n n C19 C26 SMA sing 1080 n n C3M H1 SMA sing 1081 n n C3M H2 SMA sing 1082 n n C3M H3 SMA sing 1083 n n C5M H4 SMA sing 1084 n n C5M H5 SMA sing 1085 n n C5M H6 SMA sing 1086 n n C6 H7 SMA sing 1087 n n C7M H8 SMA sing 1088 n n C7M H9 SMA sing 1089 n n C7M H10 SMA sing 1090 n n C9 H11 SMA sing 1091 n n C9 H12 SMA sing 1092 n n C10 H13 SMA sing 1093 n n C10 H14 SMA sing 1094 n n C11 H15 SMA sing 1095 n n C12 H16 SMA sing 1096 n n C13 H17 SMA sing 1097 n n C14 H18 SMA sing 1098 n n C15 H19 SMA sing 1099 n n C16 H21 SMA sing 1100 n n C17 H22 SMA sing 1101 n n C18 H23 SMA sing 1102 n n C20 H25 SMA sing 1103 n n C21 H26 SMA sing 1104 n n C21 H27 SMA sing 1105 n n C21 H28 SMA sing 1106 n n C22 H29 SMA sing 1107 n n C22 H30 SMA sing 1108 n n C22 H31 SMA sing 1109 n n C23 H32 SMA sing 1110 n n C23 H33 SMA sing 1111 n n C23 H34 SMA sing 1112 n n C24 H35 SMA sing 1113 n n C24 H36 SMA sing 1114 n n C24 H37 SMA sing 1115 n n C25 H38 SMA sing 1116 n n C25 H39 SMA sing 1117 n n C25 H40 SMA sing 1118 n n C26 H41 SMA sing 1119 n n C26 H42 SMA sing 1120 n n C26 H43 SMA sing 1121 n n O8 H44 SMA sing 1122 n n # _atom_sites.entry_id 3H1I _atom_sites.fract_transf_matrix[1][1] 0.005724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3016 3016 UNL UNL . W 13 HEM C 1 501 501 HEM HEM . X 13 HEM C 1 502 502 HEM HEM . Y 14 SMA C 1 2001 2001 SMA SMA . Z 15 ANY C 1 2002 2002 ANY ANY . AA 16 CDL C 1 2004 2004 CDL CDL . BA 11 PEE C 1 2007 2007 PEE PEE . CA 12 UNL C 1 2010 2010 UNL UNL . DA 17 GOL C 1 2011 2011 GOL GOL . EA 12 UNL C 1 2104 2104 UNL UNL . FA 12 UNL C 1 3015 3015 UNL UNL . GA 18 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 19 FES E 1 501 501 FES FES . JA 11 PEE E 1 2005 2005 PEE PEE . KA 20 PLC E 1 2009 2009 PLC PLC . LA 12 UNL E 1 2105 2105 UNL UNL . MA 12 UNL E 1 3103 3103 UNL UNL . NA 11 PEE N 1 3008 3008 PEE PEE . OA 13 HEM P 1 501 501 HEM HEM . PA 13 HEM P 1 502 502 HEM HEM . QA 12 UNL P 1 2015 2015 UNL UNL . RA 14 SMA P 1 3001 3001 SMA SMA . SA 15 ANY P 1 3002 3002 ANY ANY . TA 16 CDL P 1 3004 3004 CDL CDL . UA 11 PEE P 1 3005 3005 PEE PEE . VA 11 PEE P 1 3007 3007 PEE PEE . WA 12 UNL P 1 3010 3010 UNL UNL . XA 17 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 3104 3104 UNL UNL . ZA 18 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 19 FES R 1 501 501 FES FES . CB 12 UNL R 1 2103 2103 UNL UNL . DB 20 PLC R 1 3009 3009 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 SMA . . . Y 14 6.038 129.962 81.538 1 29.52 ? C2 SMA 2001 C 1 HETATM 2 C C3 SMA . . . Y 14 4.801 130.052 82.121 1 30.2 ? C3 SMA 2001 C 1 HETATM 3 C C3M SMA . . . Y 14 4.118 128.889 82.733 1 30.88 ? C3M SMA 2001 C 1 HETATM 4 C C4 SMA . . . Y 14 4.067 131.345 82.155 1 31.88 ? C4 SMA 2001 C 1 HETATM 5 C C4A SMA . . . Y 14 4.765 132.487 81.529 1 32.21 ? C4A SMA 2001 C 1 HETATM 6 C C5 SMA . . . Y 14 4.196 133.81 81.447 1 33.59 ? C5 SMA 2001 C 1 HETATM 7 C C5M SMA . . . Y 14 2.322 135.219 81.92 1 37.88 ? C5M SMA 2001 C 1 HETATM 8 C C6 SMA . . . Y 14 4.912 134.887 80.838 1 34.86 ? C6 SMA 2001 C 1 HETATM 9 C C7 SMA . . . Y 14 6.205 134.673 80.299 1 36.76 ? C7 SMA 2001 C 1 HETATM 10 C C7M SMA . . . Y 14 6.544 136.095 78.374 1 39.33 ? C7M SMA 2001 C 1 HETATM 11 C C8 SMA . . . Y 14 6.805 133.336 80.362 1 34.97 ? C8 SMA 2001 C 1 HETATM 12 C C8A SMA . . . Y 14 6.055 132.29 80.967 1 31.97 ? C8A SMA 2001 C 1 HETATM 13 C C9 SMA . . . Y 14 6.922 128.746 81.367 1 28.5 ? C9 SMA 2001 C 1 HETATM 14 C C10 SMA . . . Y 14 7.643 128.23 82.593 1 25.77 ? C10 SMA 2001 C 1 HETATM 15 C C11 SMA . . . Y 14 8.808 127.329 82.184 1 24.78 ? C11 SMA 2001 C 1 HETATM 16 C C12 SMA . . . Y 14 9.588 126.771 83.412 1 25.97 ? C12 SMA 2001 C 1 HETATM 17 C C13 SMA . . . Y 14 10.44 127.861 84.142 1 24.97 ? C13 SMA 2001 C 1 HETATM 18 C C14 SMA . . . Y 14 11.103 127.309 85.433 1 22.5 ? C14 SMA 2001 C 1 HETATM 19 C C15 SMA . . . Y 14 10.976 128.298 86.507 1 23.86 ? C15 SMA 2001 C 1 HETATM 20 C C16 SMA . . . Y 14 11.843 128.44 87.509 1 27.71 ? C16 SMA 2001 C 1 HETATM 21 C C17 SMA . . . Y 14 12.582 129.657 87.76 1 30.41 ? C17 SMA 2001 C 1 HETATM 22 C C18 SMA . . . Y 14 13.453 129.768 88.79 1 32.22 ? C18 SMA 2001 C 1 HETATM 23 C C19 SMA . . . Y 14 13.926 131.021 89.361 1 32.05 ? C19 SMA 2001 C 1 HETATM 24 C C20 SMA . . . Y 14 15.166 131.442 89.063 1 31.26 ? C20 SMA 2001 C 1 HETATM 25 C C21 SMA . . . Y 14 15.795 132.678 89.553 1 32.09 ? C21 SMA 2001 C 1 HETATM 26 C C22 SMA . . . Y 14 8.313 126.179 81.331 1 25.5 ? C22 SMA 2001 C 1 HETATM 27 C C23 SMA . . . Y 14 8.657 124.803 84.502 1 30.77 ? C23 SMA 2001 C 1 HETATM 28 C C24 SMA . . . Y 14 11.494 128.441 83.19 1 27.04 ? C24 SMA 2001 C 1 HETATM 29 C C25 SMA . . . Y 14 12.783 125.668 85.168 1 23.38 ? C25 SMA 2001 C 1 HETATM 30 C C26 SMA . . . Y 14 12.994 131.769 90.256 1 32.9 ? C26 SMA 2001 C 1 HETATM 31 O O1 SMA . . . Y 14 6.676 131.057 80.972 1 29.82 ? O1 SMA 2001 C 1 HETATM 32 O O4 SMA . . . Y 14 2.947 131.44 82.674 1 35.14 ? O4 SMA 2001 C 1 HETATM 33 O O5 SMA . . . Y 14 2.943 133.939 81.984 1 33.9 ? O5 SMA 2001 C 1 HETATM 34 O O7 SMA . . . Y 14 6.957 135.686 79.696 1 39.25 ? O7 SMA 2001 C 1 HETATM 35 O O8 SMA . . . Y 14 8.066 133.134 79.835 1 35.47 ? O8 SMA 2001 C 1 HETATM 36 O O12 SMA . . . Y 14 8.642 126.222 84.362 1 28.76 ? O12 SMA 2001 C 1 HETATM 37 O O14 SMA . . . Y 14 12.469 127.045 85.155 1 20.74 ? O14 SMA 2001 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #