data_3H1I
#
_model_server_result.job_id            hUlcoMLbsPCgsGXe3JfeYg 
_model_server_result.datetime_utc      '2024-11-27 06:05:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h1i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":2008}' 
#
_entry.id    3H1I 
#
_exptl.entry_id    3H1I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H1I 
_cell.length_a            174.693 
_cell.length_b            181.666 
_cell.length_c            240.732 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H1I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 U N N 
? 11 BA N N 
? 11 JA N N 
? 11 NA N N 
? 11 UA N N 
? 11 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 756 n n 
C5 C4 PEE sing 757 n n 
C4 O4P PEE sing 758 n n 
O4P P PEE sing 759 n n 
O1P P PEE doub 760 n n 
C1 O3P PEE sing 761 n n 
C1 C2 PEE sing 762 n n 
O3P P PEE sing 763 n n 
P O2P PEE sing 764 n n 
C2 C3 PEE sing 765 n n 
C2 O2 PEE sing 766 n n 
C3 O3 PEE sing 767 n n 
O2 C10 PEE sing 768 n n 
C31 C30 PEE sing 769 n n 
C31 C32 PEE sing 770 n n 
C33 C32 PEE sing 771 n n 
C33 C34 PEE sing 772 n n 
C30 O3 PEE sing 773 n n 
C30 O5 PEE doub 774 n n 
C10 O4 PEE doub 775 n n 
C10 C11 PEE sing 776 n n 
C34 C35 PEE sing 777 n n 
C11 C12 PEE sing 778 n n 
C35 C36 PEE sing 779 n n 
C36 C37 PEE sing 780 n n 
C37 C38 PEE sing 781 n n 
C38 C39 PEE doub 782 z n 
C12 C13 PEE sing 783 n n 
C39 C40 PEE sing 784 n n 
C13 C14 PEE sing 785 n n 
C14 C15 PEE sing 786 n n 
C40 C41 PEE sing 787 n n 
C15 C16 PEE sing 788 n n 
C41 C42 PEE sing 789 n n 
C16 C17 PEE sing 790 n n 
C42 C43 PEE sing 791 n n 
C17 C18 PEE sing 792 n n 
C43 C44 PEE sing 793 n n 
C18 C19 PEE doub 794 z n 
C46 C47 PEE sing 795 n n 
C46 C45 PEE sing 796 n n 
C44 C45 PEE sing 797 n n 
C19 C20 PEE sing 798 n n 
C20 C21 PEE sing 799 n n 
C21 C22 PEE sing 800 n n 
C22 C23 PEE sing 801 n n 
C23 C24 PEE sing 802 n n 
C24 C25 PEE sing 803 n n 
C26 C25 PEE sing 804 n n 
C26 C27 PEE sing 805 n n 
C27 H7 PEE sing 806 n n 
C27 H8 PEE sing 807 n n 
C27 H82 PEE sing 808 n n 
C26 H5 PEE sing 809 n n 
C26 H6 PEE sing 810 n n 
C25 H12 PEE sing 811 n n 
C25 H4 PEE sing 812 n n 
C24 H10 PEE sing 813 n n 
C24 H11 PEE sing 814 n n 
C23 H83 PEE sing 815 n n 
C23 H9 PEE sing 816 n n 
C22 H2 PEE sing 817 n n 
C22 H3 PEE sing 818 n n 
C21 H14 PEE sing 819 n n 
C21 H1 PEE sing 820 n n 
C20 H16 PEE sing 821 n n 
C20 H13 PEE sing 822 n n 
C19 H18 PEE sing 823 n n 
C18 H20 PEE sing 824 n n 
C17 H22 PEE sing 825 n n 
C17 H19 PEE sing 826 n n 
C16 H21 PEE sing 827 n n 
C16 H28 PEE sing 828 n n 
C15 H23 PEE sing 829 n n 
C15 H24 PEE sing 830 n n 
C14 H25 PEE sing 831 n n 
C14 H26 PEE sing 832 n n 
C13 H17 PEE sing 833 n n 
C13 H27 PEE sing 834 n n 
C12 H15 PEE sing 835 n n 
C12 H29 PEE sing 836 n n 
C11 H30 PEE sing 837 n n 
C11 H31 PEE sing 838 n n 
C2 H32 PEE sing 839 n n 
C1 H33 PEE sing 840 n n 
C1 H34 PEE sing 841 n n 
O2P H35 PEE sing 842 n n 
C4 H36 PEE sing 843 n n 
C4 H37 PEE sing 844 n n 
C5 H38 PEE sing 845 n n 
C5 H39 PEE sing 846 n n 
N H40 PEE sing 847 n n 
N H41 PEE sing 848 n n 
C3 H43 PEE sing 849 n n 
C3 H44 PEE sing 850 n n 
C31 H45 PEE sing 851 n n 
C31 H46 PEE sing 852 n n 
C32 H47 PEE sing 853 n n 
C32 H48 PEE sing 854 n n 
C33 H49 PEE sing 855 n n 
C33 H50 PEE sing 856 n n 
C34 H51 PEE sing 857 n n 
C34 H52 PEE sing 858 n n 
C35 H53 PEE sing 859 n n 
C35 H54 PEE sing 860 n n 
C36 H55 PEE sing 861 n n 
C36 H56 PEE sing 862 n n 
C37 H57 PEE sing 863 n n 
C37 H58 PEE sing 864 n n 
C38 H59 PEE sing 865 n n 
C39 H60 PEE sing 866 n n 
C40 H81 PEE sing 867 n n 
C40 H61 PEE sing 868 n n 
C41 H80 PEE sing 869 n n 
C41 H62 PEE sing 870 n n 
C42 H63 PEE sing 871 n n 
C42 H64 PEE sing 872 n n 
C43 H65 PEE sing 873 n n 
C43 H66 PEE sing 874 n n 
C44 H67 PEE sing 875 n n 
C44 H68 PEE sing 876 n n 
C45 H69 PEE sing 877 n n 
C45 H70 PEE sing 878 n n 
C46 H71 PEE sing 879 n n 
C46 H72 PEE sing 880 n n 
C47 H73 PEE sing 881 n n 
C47 H74 PEE sing 882 n n 
C47 H75 PEE sing 883 n n 
#
_atom_sites.entry_id                     3H1I 
_atom_sites.fract_transf_matrix[1][1]    0.005724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 UNL A 1 3016 3016 UNL UNL . 
W 13 HEM C 1 501 501 HEM HEM . 
X 13 HEM C 1 502 502 HEM HEM . 
Y 14 SMA C 1 2001 2001 SMA SMA . 
Z 15 ANY C 1 2002 2002 ANY ANY . 
AA 16 CDL C 1 2004 2004 CDL CDL . 
BA 11 PEE C 1 2007 2007 PEE PEE . 
CA 12 UNL C 1 2010 2010 UNL UNL . 
DA 17 GOL C 1 2011 2011 GOL GOL . 
EA 12 UNL C 1 2104 2104 UNL UNL . 
FA 12 UNL C 1 3015 3015 UNL UNL . 
GA 18 HEC D 1 501 501 HEC HEC . 
HA 16 CDL D 1 2003 2003 CDL CDL . 
IA 19 FES E 1 501 501 FES FES . 
JA 11 PEE E 1 2005 2005 PEE PEE . 
KA 20 PLC E 1 2009 2009 PLC PLC . 
LA 12 UNL E 1 2105 2105 UNL UNL . 
MA 12 UNL E 1 3103 3103 UNL UNL . 
NA 11 PEE N 1 3008 3008 PEE PEE . 
OA 13 HEM P 1 501 501 HEM HEM . 
PA 13 HEM P 1 502 502 HEM HEM . 
QA 12 UNL P 1 2015 2015 UNL UNL . 
RA 14 SMA P 1 3001 3001 SMA SMA . 
SA 15 ANY P 1 3002 3002 ANY ANY . 
TA 16 CDL P 1 3004 3004 CDL CDL . 
UA 11 PEE P 1 3005 3005 PEE PEE . 
VA 11 PEE P 1 3007 3007 PEE PEE . 
WA 12 UNL P 1 3010 3010 UNL UNL . 
XA 17 GOL P 1 3011 3011 GOL GOL . 
YA 12 UNL P 1 3104 3104 UNL UNL . 
ZA 18 HEC Q 1 501 501 HEC HEC . 
AB 16 CDL Q 1 3003 3003 CDL CDL . 
BB 19 FES R 1 501 501 FES FES . 
CB 12 UNL R 1 2103 2103 UNL UNL . 
DB 20 PLC R 1 3009 3009 PLC PLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 PEE . . . U 11 37.121 116.073 63.281 1 123.47 ? C13 PEE 2008 A 1 
HETATM 2 C C12 PEE . . . U 11 38.22 115.292 62.538 1 124.82 ? C12 PEE 2008 A 1 
HETATM 3 C C11 PEE . . . U 11 39.593 116.015 62.594 1 126.11 ? C11 PEE 2008 A 1 
HETATM 4 C C10 PEE . . . U 11 40.775 115.112 63.067 1 127.38 ? C10 PEE 2008 A 1 
HETATM 5 O O4 PEE . . . U 11 40.878 114.768 64.253 1 128.56 ? O4 PEE 2008 A 1 
HETATM 6 O O2 PEE . . . U 11 41.684 114.728 62.03 1 127.91 ? O2 PEE 2008 A 1 
HETATM 7 C C2 PEE . . . U 11 43.115 114.433 62.405 1 127.27 ? C2 PEE 2008 A 1 
HETATM 8 C C1 PEE . . . U 11 43.67 113.167 61.629 1 125.59 ? C1 PEE 2008 A 1 
HETATM 9 O O3P PEE . . . U 11 43.308 111.839 62.189 1 123.43 ? O3P PEE 2008 A 1 
HETATM 10 P P PEE . . . U 11 43.528 110.422 61.355 1 121.91 ? P PEE 2008 A 1 
HETATM 11 O O2P PEE . . . U 11 43.618 110.728 59.783 1 123.03 ? O2P PEE 2008 A 1 
HETATM 12 O O1P PEE . . . U 11 42.265 109.451 61.609 1 121.3 ? O1P PEE 2008 A 1 
HETATM 13 O O4P PEE . . . U 11 44.898 109.647 61.85 1 122.34 ? O4P PEE 2008 A 1 
HETATM 14 C C4 PEE . . . U 11 46.274 110.066 61.499 1 122.25 ? C4 PEE 2008 A 1 
HETATM 15 C C5 PEE . . . U 11 47.404 109.183 62.101 1 121.25 ? C5 PEE 2008 A 1 
HETATM 16 C C3 PEE . . . U 11 44.004 115.709 62.204 1 128.18 ? C3 PEE 2008 A 1 
HETATM 17 O O3 PEE . . . U 11 45.128 115.828 63.145 1 129.63 ? O3 PEE 2008 A 1 
HETATM 18 C C30 PEE . . . U 11 45.401 117.153 63.565 1 130.41 ? C30 PEE 2008 A 1 
HETATM 19 O O5 PEE . . . U 11 45.878 118.038 62.818 1 130.14 ? O5 PEE 2008 A 1 
HETATM 20 C C31 PEE . . . U 11 45.065 117.413 65.077 1 130.81 ? C31 PEE 2008 A 1 
HETATM 21 C C32 PEE . . . U 11 43.718 118.136 65.347 1 130.19 ? C32 PEE 2008 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           408 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#