data_3H1I # _model_server_result.job_id 7gjl8zS9U0ULLB77adqujA _model_server_result.datetime_utc '2024-11-05 07:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":3002}' # _entry.id 3H1I # _exptl.entry_id 3H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.652 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-METHYL-BUTYRIC ACID 3-(3-FORMYLAMINO-2-HYDROXY-BENZOYLAMINO)-8-HEPTYL-2,6-DIMETHYL-4,9-DIOXO-[1,5]DIOXONAN-7-YL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1I _cell.length_a 174.693 _cell.length_b 181.666 _cell.length_c 240.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C29 H42 N2 O9' _chem_comp.formula_weight 562.652 _chem_comp.id ANY _chem_comp.mon_nstd_flag . _chem_comp.name '2-METHYL-BUTYRIC ACID 3-(3-FORMYLAMINO-2-HYDROXY-BENZOYLAMINO)-8-HEPTYL-2,6-DIMETHYL-4,9-DIOXO-[1,5]DIOXONAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ANTIMYCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ANY doub 13 n y C1 C6 ANY sing 14 n y C1 O1 ANY sing 15 n n C2 C3 ANY sing 16 n y C2 N1 ANY sing 17 n n C3 C4 ANY doub 18 n y C3 H3 ANY sing 19 n n C4 C5 ANY sing 20 n y C4 H4 ANY sing 21 n n C5 C6 ANY doub 22 n y C5 H5 ANY sing 23 n n C6 C7 ANY sing 24 n n C7 N2 ANY sing 25 n n C7 O3 ANY doub 26 n n N1 C8 ANY sing 27 n n N1 HN1 ANY sing 28 n n N2 C9 ANY sing 29 n n N2 HN2 ANY sing 30 n n O1 HO1 ANY sing 31 n n C9 C10 ANY sing 32 n n C9 C20 ANY sing 33 n n C9 H9 ANY sing 34 n n C10 O5 ANY sing 35 n n C10 C26 ANY sing 36 n n C10 H10 ANY sing 37 n n O4 C11 ANY sing 38 n n O4 C20 ANY sing 39 n n O5 C14 ANY sing 40 n n C11 C12 ANY sing 41 n n C11 C27 ANY sing 42 n n C11 H11 ANY sing 43 n n C12 C13 ANY sing 44 n n C12 O8 ANY sing 45 n n C12 H12 ANY sing 46 n n C13 C14 ANY sing 47 n n C13 C15 ANY sing 48 n n C13 H13 ANY sing 49 n n C14 O6 ANY doub 50 n n C15 C16 ANY sing 51 n n C15 H151 ANY sing 52 n n C15 H152 ANY sing 53 n n C16 C17 ANY sing 54 n n C16 H161 ANY sing 55 n n C16 H162 ANY sing 56 n n C20 O7 ANY doub 57 n n O8 C21 ANY sing 58 n n C21 C22 ANY sing 59 n n C21 O9 ANY doub 60 n n C22 C23 ANY sing 61 n n C22 C25 ANY sing 62 n n C22 H22 ANY sing 63 n n C26 H261 ANY sing 64 n n C26 H262 ANY sing 65 n n C26 H263 ANY sing 66 n n C27 H271 ANY sing 67 n n C27 H272 ANY sing 68 n n C27 H273 ANY sing 69 n n C23 C24 ANY sing 70 n n C23 H231 ANY sing 71 n n C23 H232 ANY sing 72 n n C17 C18 ANY sing 73 n n C17 H171 ANY sing 74 n n C17 H172 ANY sing 75 n n C8 O2 ANY doub 76 n n C8 H8 ANY sing 77 n n C24 H241 ANY sing 78 n n C24 H242 ANY sing 79 n n C24 H243 ANY sing 80 n n C25 H251 ANY sing 81 n n C25 H252 ANY sing 82 n n C25 H253 ANY sing 83 n n C18 C19 ANY sing 84 n n C18 H181 ANY sing 85 n n C18 H182 ANY sing 86 n n C19 C28 ANY sing 87 n n C19 H191 ANY sing 88 n n C19 H192 ANY sing 89 n n C28 C29 ANY sing 90 n n C28 H281 ANY sing 91 n n C28 H282 ANY sing 92 n n C29 H291 ANY sing 93 n n C29 H292 ANY sing 94 n n C29 H293 ANY sing 95 n n # _atom_sites.entry_id 3H1I _atom_sites.fract_transf_matrix[1][1] 0.005724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3016 3016 UNL UNL . W 13 HEM C 1 501 501 HEM HEM . X 13 HEM C 1 502 502 HEM HEM . Y 14 SMA C 1 2001 2001 SMA SMA . Z 15 ANY C 1 2002 2002 ANY ANY . AA 16 CDL C 1 2004 2004 CDL CDL . BA 11 PEE C 1 2007 2007 PEE PEE . CA 12 UNL C 1 2010 2010 UNL UNL . DA 17 GOL C 1 2011 2011 GOL GOL . EA 12 UNL C 1 2104 2104 UNL UNL . FA 12 UNL C 1 3015 3015 UNL UNL . GA 18 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 19 FES E 1 501 501 FES FES . JA 11 PEE E 1 2005 2005 PEE PEE . KA 20 PLC E 1 2009 2009 PLC PLC . LA 12 UNL E 1 2105 2105 UNL UNL . MA 12 UNL E 1 3103 3103 UNL UNL . NA 11 PEE N 1 3008 3008 PEE PEE . OA 13 HEM P 1 501 501 HEM HEM . PA 13 HEM P 1 502 502 HEM HEM . QA 12 UNL P 1 2015 2015 UNL UNL . RA 14 SMA P 1 3001 3001 SMA SMA . SA 15 ANY P 1 3002 3002 ANY ANY . TA 16 CDL P 1 3004 3004 CDL CDL . UA 11 PEE P 1 3005 3005 PEE PEE . VA 11 PEE P 1 3007 3007 PEE PEE . WA 12 UNL P 1 3010 3010 UNL UNL . XA 17 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 3104 3104 UNL UNL . ZA 18 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 19 FES R 1 501 501 FES FES . CB 12 UNL R 1 2103 2103 UNL UNL . DB 20 PLC R 1 3009 3009 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ANY . . . SA 15 45.27 116.177 101.617 1 81.17 ? C1 ANY 3002 P 1 HETATM 2 C C2 ANY . . . SA 15 46.38 116.068 102.553 1 81.92 ? C2 ANY 3002 P 1 HETATM 3 C C3 ANY . . . SA 15 47.537 115.323 102.157 1 81.52 ? C3 ANY 3002 P 1 HETATM 4 C C4 ANY . . . SA 15 47.597 114.699 100.889 1 80.75 ? C4 ANY 3002 P 1 HETATM 5 C C5 ANY . . . SA 15 46.536 114.791 99.983 1 80.7 ? C5 ANY 3002 P 1 HETATM 6 C C6 ANY . . . SA 15 45.363 115.52 100.326 1 80.12 ? C6 ANY 3002 P 1 HETATM 7 C C7 ANY . . . SA 15 44.228 115.602 99.339 1 78.35 ? C7 ANY 3002 P 1 HETATM 8 N N1 ANY . . . SA 15 46.257 116.721 103.827 1 82.97 ? N1 ANY 3002 P 1 HETATM 9 N N2 ANY . . . SA 15 43.329 116.641 99.504 1 74.12 ? N2 ANY 3002 P 1 HETATM 10 O O1 ANY . . . SA 15 44.188 116.904 102.054 1 80.86 ? O1 ANY 3002 P 1 HETATM 11 O O3 ANY . . . SA 15 44.094 114.765 98.404 1 79.05 ? O3 ANY 3002 P 1 HETATM 12 C C9 ANY . . . SA 15 42.206 116.863 98.664 1 68.8 ? C9 ANY 3002 P 1 HETATM 13 C C10 ANY . . . SA 15 40.843 116.446 99.324 1 66.68 ? C10 ANY 3002 P 1 HETATM 14 O O4 ANY . . . SA 15 41.525 118.462 97.057 1 65.47 ? O4 ANY 3002 P 1 HETATM 15 O O5 ANY . . . SA 15 39.755 117.135 98.698 1 67.44 ? O5 ANY 3002 P 1 HETATM 16 C C11 ANY . . . SA 15 40.597 119.533 96.857 1 66.27 ? C11 ANY 3002 P 1 HETATM 17 C C12 ANY . . . SA 15 39.412 118.896 96.01 1 67.85 ? C12 ANY 3002 P 1 HETATM 18 C C13 ANY . . . SA 15 38.501 117.866 96.785 1 69.48 ? C13 ANY 3002 P 1 HETATM 19 C C14 ANY . . . SA 15 39.346 116.772 97.421 1 69.82 ? C14 ANY 3002 P 1 HETATM 20 O O6 ANY . . . SA 15 39.738 115.702 96.962 1 72.35 ? O6 ANY 3002 P 1 HETATM 21 C C15 ANY . . . SA 15 37.45 117.2 95.857 1 70.85 ? C15 ANY 3002 P 1 HETATM 22 C C16 ANY . . . SA 15 36.393 116.398 96.632 1 72.29 ? C16 ANY 3002 P 1 HETATM 23 C C20 ANY . . . SA 15 42.143 118.336 98.255 1 67.57 ? C20 ANY 3002 P 1 HETATM 24 O O7 ANY . . . SA 15 42.583 119.318 98.816 1 69.15 ? O7 ANY 3002 P 1 HETATM 25 O O8 ANY . . . SA 15 38.561 120.004 95.573 1 68.29 ? O8 ANY 3002 P 1 HETATM 26 C C21 ANY . . . SA 15 38.567 120.486 94.246 1 68.16 ? C21 ANY 3002 P 1 HETATM 27 C C22 ANY . . . SA 15 37.611 121.623 94.091 1 67.63 ? C22 ANY 3002 P 1 HETATM 28 C C26 ANY . . . SA 15 40.716 116.778 100.79 1 65.35 ? C26 ANY 3002 P 1 HETATM 29 O O9 ANY . . . SA 15 39.307 119.977 93.401 1 69.03 ? O9 ANY 3002 P 1 HETATM 30 C C27 ANY . . . SA 15 41.362 120.631 96.137 1 65.73 ? C27 ANY 3002 P 1 HETATM 31 C C23 ANY . . . SA 15 36.639 121.573 92.921 1 67.97 ? C23 ANY 3002 P 1 HETATM 32 C C17 ANY . . . SA 15 35.22 115.991 95.75 1 73.42 ? C17 ANY 3002 P 1 HETATM 33 C C8 ANY . . . SA 15 47.164 116.767 104.914 1 82.73 ? C8 ANY 3002 P 1 HETATM 34 C C25 ANY . . . SA 15 37.738 123.116 93.901 1 66.37 ? C25 ANY 3002 P 1 HETATM 35 C C18 ANY . . . SA 15 34.011 115.553 96.581 1 73.97 ? C18 ANY 3002 P 1 HETATM 36 O O2 ANY . . . SA 15 48.284 116.208 104.91 1 82.22 ? O2 ANY 3002 P 1 HETATM 37 C C19 ANY . . . SA 15 32.851 116.538 96.508 1 71.92 ? C19 ANY 3002 P 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #