data_3H1I # _model_server_result.job_id lBjQ5zEfKzOe0sHSzhbB-Q _model_server_result.datetime_utc '2024-11-27 05:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":3009}' # _entry.id 3H1I # _exptl.entry_id 3H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1I _cell.length_a 174.693 _cell.length_b 181.666 _cell.length_c 240.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 KA N N ? 20 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 907 n n C1 O3P PLC sing 908 n n C1 H11 PLC sing 909 n n C1 H12 PLC sing 910 n n C2 C3 PLC sing 911 n n C2 O2 PLC sing 912 n n C2 H2 PLC sing 913 n n C3 O3 PLC sing 914 n n C3 H31 PLC sing 915 n n C3 H32 PLC sing 916 n n C4 C5 PLC sing 917 n n C4 O4P PLC sing 918 n n C4 H41 PLC sing 919 n n C4 H42 PLC sing 920 n n C5 N PLC sing 921 n n C5 H51 PLC sing 922 n n C5 H52 PLC sing 923 n n C6 N PLC sing 924 n n C6 H61 PLC sing 925 n n C6 H62 PLC sing 926 n n C6 H63 PLC sing 927 n n C7 N PLC sing 928 n n C7 H71 PLC sing 929 n n C7 H72 PLC sing 930 n n C7 H73 PLC sing 931 n n C8 N PLC sing 932 n n C8 H81 PLC sing 933 n n C8 H82 PLC sing 934 n n C8 H83 PLC sing 935 n n C' C1' PLC sing 936 n n C' O' PLC doub 937 n n C' O2 PLC sing 938 n n C1' C2' PLC sing 939 n n C1' "H1'1" PLC sing 940 n n C1' "H1'2" PLC sing 941 n n C2' C3' PLC sing 942 n n C2' "H2'1" PLC sing 943 n n C2' "H2'2" PLC sing 944 n n C3' C4' PLC sing 945 n n C3' "H3'1" PLC sing 946 n n C3' "H3'2" PLC sing 947 n n C4' C5' PLC sing 948 n n C4' "H4'1" PLC sing 949 n n C4' "H4'2" PLC sing 950 n n C5' C6' PLC sing 951 n n C5' "H5'1" PLC sing 952 n n C5' "H5'2" PLC sing 953 n n C6' C7' PLC sing 954 n n C6' "H6'1" PLC sing 955 n n C6' "H6'2" PLC sing 956 n n C7' C8' PLC sing 957 n n C7' "H7'1" PLC sing 958 n n C7' "H7'2" PLC sing 959 n n C8' C9' PLC sing 960 n n C8' "H8'1" PLC sing 961 n n C8' "H8'2" PLC sing 962 n n C9' CA' PLC sing 963 n n C9' "H9'1" PLC sing 964 n n C9' "H9'2" PLC sing 965 n n CA' CB' PLC sing 966 n n CA' "HT'1" PLC sing 967 n n CA' "HT'2" PLC sing 968 n n CB' "HE'1" PLC sing 969 n n CB' "HE'2" PLC sing 970 n n CB' "HE'3" PLC sing 971 n n CB C1B PLC sing 972 n n CB OB PLC doub 973 n n CB O3 PLC sing 974 n n C1B C2B PLC sing 975 n n C1B H1A1 PLC sing 976 n n C1B H1A2 PLC sing 977 n n C2B C3B PLC sing 978 n n C2B H2A1 PLC sing 979 n n C2B H2A2 PLC sing 980 n n C3B C4B PLC sing 981 n n C3B H3A1 PLC sing 982 n n C3B H3A2 PLC sing 983 n n C4B C5B PLC sing 984 n n C4B H4A1 PLC sing 985 n n C4B H4A2 PLC sing 986 n n C5B C6B PLC sing 987 n n C5B H5A1 PLC sing 988 n n C5B H5A2 PLC sing 989 n n C6B C7B PLC sing 990 n n C6B H6A1 PLC sing 991 n n C6B H6A2 PLC sing 992 n n C7B C8B PLC sing 993 n n C7B H7A1 PLC sing 994 n n C7B H7A2 PLC sing 995 n n C8B C9B PLC sing 996 n n C8B H8A1 PLC sing 997 n n C8B H8A2 PLC sing 998 n n C9B CAA PLC sing 999 n n C9B H9A1 PLC sing 1000 n n C9B H9A2 PLC sing 1001 n n CAA CBA PLC sing 1002 n n CAA HTA1 PLC sing 1003 n n CAA HTA2 PLC sing 1004 n n CBA HEA1 PLC sing 1005 n n CBA HEA2 PLC sing 1006 n n CBA HEA3 PLC sing 1007 n n O1P P PLC doub 1008 n n O2P P PLC sing 1009 n n O2P HOP2 PLC sing 1010 n n O3P P PLC sing 1011 n n O4P P PLC sing 1012 n n # _atom_sites.entry_id 3H1I _atom_sites.fract_transf_matrix[1][1] 0.005724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3016 3016 UNL UNL . W 13 HEM C 1 501 501 HEM HEM . X 13 HEM C 1 502 502 HEM HEM . Y 14 SMA C 1 2001 2001 SMA SMA . Z 15 ANY C 1 2002 2002 ANY ANY . AA 16 CDL C 1 2004 2004 CDL CDL . BA 11 PEE C 1 2007 2007 PEE PEE . CA 12 UNL C 1 2010 2010 UNL UNL . DA 17 GOL C 1 2011 2011 GOL GOL . EA 12 UNL C 1 2104 2104 UNL UNL . FA 12 UNL C 1 3015 3015 UNL UNL . GA 18 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 19 FES E 1 501 501 FES FES . JA 11 PEE E 1 2005 2005 PEE PEE . KA 20 PLC E 1 2009 2009 PLC PLC . LA 12 UNL E 1 2105 2105 UNL UNL . MA 12 UNL E 1 3103 3103 UNL UNL . NA 11 PEE N 1 3008 3008 PEE PEE . OA 13 HEM P 1 501 501 HEM HEM . PA 13 HEM P 1 502 502 HEM HEM . QA 12 UNL P 1 2015 2015 UNL UNL . RA 14 SMA P 1 3001 3001 SMA SMA . SA 15 ANY P 1 3002 3002 ANY ANY . TA 16 CDL P 1 3004 3004 CDL CDL . UA 11 PEE P 1 3005 3005 PEE PEE . VA 11 PEE P 1 3007 3007 PEE PEE . WA 12 UNL P 1 3010 3010 UNL UNL . XA 17 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 3104 3104 UNL UNL . ZA 18 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 19 FES R 1 501 501 FES FES . CB 12 UNL R 1 2103 2103 UNL UNL . DB 20 PLC R 1 3009 3009 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . DB 20 27.274 135.328 114.28 1 102.47 ? C1 PLC 3009 R 1 HETATM 2 C C2 PLC . . . DB 20 28.799 134.905 114.258 1 97.86 ? C2 PLC 3009 R 1 HETATM 3 C C3 PLC . . . DB 20 29.134 133.962 115.463 1 94.23 ? C3 PLC 3009 R 1 HETATM 4 C C4 PLC . . . DB 20 23.949 139.112 116.385 1 117.82 ? C4 PLC 3009 R 1 HETATM 5 C C5 PLC . . . DB 20 24.081 140.617 116.835 1 118.95 ? C5 PLC 3009 R 1 HETATM 6 C C6 PLC . . . DB 20 21.779 141.164 116.013 1 118.67 ? C6 PLC 3009 R 1 HETATM 7 C C7 PLC . . . DB 20 22.202 140.822 118.432 1 118.23 ? C7 PLC 3009 R 1 HETATM 8 C C8 PLC . . . DB 20 23.062 142.808 117.297 1 117.5 ? C8 PLC 3009 R 1 HETATM 9 C C' PLC . . . DB 20 29.936 135.005 111.952 1 93.77 ? C' PLC 3009 R 1 HETATM 10 C C1' PLC . . . DB 20 31.256 134.302 111.494 1 89.72 ? C1' PLC 3009 R 1 HETATM 11 C C2' PLC . . . DB 20 31.423 134.128 109.96 1 85.33 ? C2' PLC 3009 R 1 HETATM 12 C C3' PLC . . . DB 20 32.141 132.805 109.617 1 82.2 ? C3' PLC 3009 R 1 HETATM 13 C C4' PLC . . . DB 20 32.776 132.729 108.208 1 80.06 ? C4' PLC 3009 R 1 HETATM 14 C C5' PLC . . . DB 20 32.714 131.318 107.545 1 77.88 ? C5' PLC 3009 R 1 HETATM 15 C C6' PLC . . . DB 20 33.702 131.11 106.361 1 76.22 ? C6' PLC 3009 R 1 HETATM 16 C C7' PLC . . . DB 20 33.064 130.911 104.963 1 74.58 ? C7' PLC 3009 R 1 HETATM 17 C CB PLC . . . DB 20 30.349 131.933 114.871 1 88.15 ? CB PLC 3009 R 1 HETATM 18 C C1B PLC . . . DB 20 31.518 131.549 113.9 1 83.91 ? C1B PLC 3009 R 1 HETATM 19 C C2B PLC . . . DB 20 32.391 130.359 114.353 1 79.69 ? C2B PLC 3009 R 1 HETATM 20 C C3B PLC . . . DB 20 33.579 130.127 113.412 1 77.67 ? C3B PLC 3009 R 1 HETATM 21 C C4B PLC . . . DB 20 34.77 129.468 114.132 1 77.84 ? C4B PLC 3009 R 1 HETATM 22 C C5B PLC . . . DB 20 35.91 129.082 113.162 1 77.21 ? C5B PLC 3009 R 1 HETATM 23 O O' PLC . . . DB 20 29.591 136.106 111.467 1 95.56 ? O' PLC 3009 R 1 HETATM 24 O OB PLC . . . DB 20 29.444 131.132 115.192 1 88.8 ? OB PLC 3009 R 1 HETATM 25 O O2 PLC . . . DB 20 29.184 134.26 112.937 1 96.2 ? O2 PLC 3009 R 1 HETATM 26 O O3 PLC . . . DB 20 30.423 133.268 115.334 1 90.6 ? O3 PLC 3009 R 1 HETATM 27 O O1P PLC . . . DB 20 24.402 136.675 114.235 1 113.74 ? O1P PLC 3009 R 1 HETATM 28 O O2P PLC . . . DB 20 24.847 135.902 116.687 1 113.68 ? O2P PLC 3009 R 1 HETATM 29 O O3P PLC . . . DB 20 26.93 136.516 115.108 1 109.07 ? O3P PLC 3009 R 1 HETATM 30 O O4P PLC . . . DB 20 25.232 138.46 116.008 1 115.31 ? O4P PLC 3009 R 1 HETATM 31 N N PLC . . . DB 20 22.781 141.337 117.139 1 118.66 ? N PLC 3009 R 1 HETATM 32 P P PLC . . . DB 20 25.362 136.888 115.514 1 113.14 ? P PLC 3009 R 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 32 #