data_3H1I # _model_server_result.job_id 04Z03EiXB4U9D_YjPEJp5A _model_server_result.datetime_utc '2024-11-23 14:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":501}' # _entry.id 3H1I # _exptl.entry_id 3H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1I _cell.length_a 174.693 _cell.length_b 181.666 _cell.length_c 240.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 W N N ? 13 X N N ? 13 OA N N ? 13 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 568 n n CHA C4D HEM doub 569 n n CHA HHA HEM sing 570 n n CHB C4A HEM sing 571 n n CHB C1B HEM doub 572 n n CHB HHB HEM sing 573 n n CHC C4B HEM sing 574 n n CHC C1C HEM doub 575 n n CHC HHC HEM sing 576 n n CHD C4C HEM doub 577 n n CHD C1D HEM sing 578 n n CHD HHD HEM sing 579 n n C1A C2A HEM doub 580 n y C1A NA HEM sing 581 n y C2A C3A HEM sing 582 n y C2A CAA HEM sing 583 n n C3A C4A HEM doub 584 n y C3A CMA HEM sing 585 n n C4A NA HEM sing 586 n y CMA HMA HEM sing 587 n n CMA HMAA HEM sing 588 n n CMA HMAB HEM sing 589 n n CAA CBA HEM sing 590 n n CAA HAA HEM sing 591 n n CAA HAAA HEM sing 592 n n CBA CGA HEM sing 593 n n CBA HBA HEM sing 594 n n CBA HBAA HEM sing 595 n n CGA O1A HEM doub 596 n n CGA O2A HEM sing 597 n n C1B C2B HEM sing 598 n n C1B NB HEM sing 599 n n C2B C3B HEM doub 600 n n C2B CMB HEM sing 601 n n C3B C4B HEM sing 602 n n C3B CAB HEM sing 603 n n C4B NB HEM doub 604 n n CMB HMB HEM sing 605 n n CMB HMBA HEM sing 606 n n CMB HMBB HEM sing 607 n n CAB CBB HEM doub 608 n n CAB HAB HEM sing 609 n n CBB HBB HEM sing 610 n n CBB HBBA HEM sing 611 n n C1C C2C HEM sing 612 n y C1C NC HEM sing 613 n y C2C C3C HEM doub 614 n y C2C CMC HEM sing 615 n n C3C C4C HEM sing 616 n y C3C CAC HEM sing 617 n n C4C NC HEM sing 618 n y CMC HMC HEM sing 619 n n CMC HMCA HEM sing 620 n n CMC HMCB HEM sing 621 n n CAC CBC HEM doub 622 n n CAC HAC HEM sing 623 n n CBC HBC HEM sing 624 n n CBC HBCA HEM sing 625 n n C1D C2D HEM sing 626 n n C1D ND HEM doub 627 n n C2D C3D HEM doub 628 n n C2D CMD HEM sing 629 n n C3D C4D HEM sing 630 n n C3D CAD HEM sing 631 n n C4D ND HEM sing 632 n n CMD HMD HEM sing 633 n n CMD HMDA HEM sing 634 n n CMD HMDB HEM sing 635 n n CAD CBD HEM sing 636 n n CAD HAD HEM sing 637 n n CAD HADA HEM sing 638 n n CBD CGD HEM sing 639 n n CBD HBD HEM sing 640 n n CBD HBDA HEM sing 641 n n CGD O1D HEM doub 642 n n CGD O2D HEM sing 643 n n O2A H2A HEM sing 644 n n O2D H2D HEM sing 645 n n FE NA HEM sing 646 n n FE NB HEM sing 647 n n FE NC HEM sing 648 n n FE ND HEM sing 649 n n # _atom_sites.entry_id 3H1I _atom_sites.fract_transf_matrix[1][1] 0.005724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3016 3016 UNL UNL . W 13 HEM C 1 501 501 HEM HEM . X 13 HEM C 1 502 502 HEM HEM . Y 14 SMA C 1 2001 2001 SMA SMA . Z 15 ANY C 1 2002 2002 ANY ANY . AA 16 CDL C 1 2004 2004 CDL CDL . BA 11 PEE C 1 2007 2007 PEE PEE . CA 12 UNL C 1 2010 2010 UNL UNL . DA 17 GOL C 1 2011 2011 GOL GOL . EA 12 UNL C 1 2104 2104 UNL UNL . FA 12 UNL C 1 3015 3015 UNL UNL . GA 18 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 19 FES E 1 501 501 FES FES . JA 11 PEE E 1 2005 2005 PEE PEE . KA 20 PLC E 1 2009 2009 PLC PLC . LA 12 UNL E 1 2105 2105 UNL UNL . MA 12 UNL E 1 3103 3103 UNL UNL . NA 11 PEE N 1 3008 3008 PEE PEE . OA 13 HEM P 1 501 501 HEM HEM . PA 13 HEM P 1 502 502 HEM HEM . QA 12 UNL P 1 2015 2015 UNL UNL . RA 14 SMA P 1 3001 3001 SMA SMA . SA 15 ANY P 1 3002 3002 ANY ANY . TA 16 CDL P 1 3004 3004 CDL CDL . UA 11 PEE P 1 3005 3005 PEE PEE . VA 11 PEE P 1 3007 3007 PEE PEE . WA 12 UNL P 1 3010 3010 UNL UNL . XA 17 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 3104 3104 UNL UNL . ZA 18 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 19 FES R 1 501 501 FES FES . CB 12 UNL R 1 2103 2103 UNL UNL . DB 20 PLC R 1 3009 3009 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . W 13 20.851 136.941 77.419 1 32.4 ? CHA HEM 501 C 1 HETATM 2 C CHB HEM . . . W 13 20.011 132.336 76.985 1 31.14 ? CHB HEM 501 C 1 HETATM 3 C CHC HEM . . . W 13 24.372 131.364 78.515 1 34.4 ? CHC HEM 501 C 1 HETATM 4 C CHD HEM . . . W 13 25.238 135.99 78.954 1 33.77 ? CHD HEM 501 C 1 HETATM 5 C C1A HEM . . . W 13 20.259 135.756 77.177 1 31.29 ? C1A HEM 501 C 1 HETATM 6 C C2A HEM . . . W 13 18.933 135.679 76.661 1 30.87 ? C2A HEM 501 C 1 HETATM 7 C C3A HEM . . . W 13 18.721 134.382 76.585 1 30.38 ? C3A HEM 501 C 1 HETATM 8 C C4A HEM . . . W 13 19.893 133.685 76.995 1 30.35 ? C4A HEM 501 C 1 HETATM 9 C CMA HEM . . . W 13 17.448 133.743 76.115 1 30.29 ? CMA HEM 501 C 1 HETATM 10 C CAA HEM . . . W 13 18.001 136.791 76.221 1 31.48 ? CAA HEM 501 C 1 HETATM 11 C CBA HEM . . . W 13 18.518 137.167 74.846 1 35.24 ? CBA HEM 501 C 1 HETATM 12 C CGA HEM . . . W 13 17.527 137.983 74.037 1 37.19 ? CGA HEM 501 C 1 HETATM 13 O O1A HEM . . . W 13 17.384 139.205 74.274 1 36.45 ? O1A HEM 501 C 1 HETATM 14 O O2A HEM . . . W 13 16.881 137.382 73.152 1 39.87 ? O2A HEM 501 C 1 HETATM 15 C C1B HEM . . . W 13 21.104 131.652 77.388 1 32.63 ? C1B HEM 501 C 1 HETATM 16 C C2B HEM . . . W 13 21.162 130.206 77.634 1 33.9 ? C2B HEM 501 C 1 HETATM 17 C C3B HEM . . . W 13 22.429 129.946 77.888 1 34.57 ? C3B HEM 501 C 1 HETATM 18 C C4B HEM . . . W 13 23.074 131.214 78.114 1 34.07 ? C4B HEM 501 C 1 HETATM 19 C CMB HEM . . . W 13 20.094 129.131 77.553 1 33.58 ? CMB HEM 501 C 1 HETATM 20 C CAB HEM . . . W 13 22.995 128.707 77.831 1 35.41 ? CAB HEM 501 C 1 HETATM 21 C CBB HEM . . . W 13 22.641 127.691 78.841 1 36.79 ? CBB HEM 501 C 1 HETATM 22 C C1C HEM . . . W 13 25.023 132.572 78.664 1 33.89 ? C1C HEM 501 C 1 HETATM 23 C C2C HEM . . . W 13 26.43 132.712 78.994 1 32.96 ? C2C HEM 501 C 1 HETATM 24 C C3C HEM . . . W 13 26.603 133.957 79.428 1 31.71 ? C3C HEM 501 C 1 HETATM 25 C C4C HEM . . . W 13 25.402 134.659 78.922 1 32.69 ? C4C HEM 501 C 1 HETATM 26 C CMC HEM . . . W 13 27.485 131.646 78.989 1 32.98 ? CMC HEM 501 C 1 HETATM 27 C CAC HEM . . . W 13 27.657 134.372 80.228 1 28.96 ? CAC HEM 501 C 1 HETATM 28 C CBC HEM . . . W 13 27.971 133.575 81.524 1 24.03 ? CBC HEM 501 C 1 HETATM 29 C C1D HEM . . . W 13 24.059 136.617 78.618 1 34.65 ? C1D HEM 501 C 1 HETATM 30 C C2D HEM . . . W 13 23.906 138.09 78.613 1 35.85 ? C2D HEM 501 C 1 HETATM 31 C C3D HEM . . . W 13 22.701 138.387 78.091 1 33.4 ? C3D HEM 501 C 1 HETATM 32 C C4D HEM . . . W 13 22.092 137.078 77.881 1 33.04 ? C4D HEM 501 C 1 HETATM 33 C CMD HEM . . . W 13 24.984 139.131 79.009 1 38.32 ? CMD HEM 501 C 1 HETATM 34 C CAD HEM . . . W 13 22.241 139.817 77.87 1 30.28 ? CAD HEM 501 C 1 HETATM 35 C CBD HEM . . . W 13 22.355 140.296 76.445 1 28.82 ? CBD HEM 501 C 1 HETATM 36 C CGD HEM . . . W 13 21.231 139.773 75.586 1 29.59 ? CGD HEM 501 C 1 HETATM 37 O O1D HEM . . . W 13 20.07 139.995 75.954 1 31.36 ? O1D HEM 501 C 1 HETATM 38 O O2D HEM . . . W 13 21.484 139.144 74.542 1 30.44 ? O2D HEM 501 C 1 HETATM 39 N NA HEM . . . W 13 20.848 134.535 77.376 1 30.68 ? NA HEM 501 C 1 HETATM 40 N NB HEM . . . W 13 22.243 132.275 77.816 1 31.96 ? NB HEM 501 C 1 HETATM 41 N NC HEM . . . W 13 24.415 133.798 78.498 1 32.36 ? NC HEM 501 C 1 HETATM 42 N ND HEM . . . W 13 22.921 136.001 78.181 1 32.7 ? ND HEM 501 C 1 HETATM 43 FE FE HEM . . . W 13 22.604 134.141 77.944 1 28.97 ? FE HEM 501 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #