data_3H1I # _model_server_result.job_id QcDKhDv90DOj7M-fWnFkVA _model_server_result.datetime_utc '2024-11-05 07:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":501}' # _entry.id 3H1I # _exptl.entry_id 3H1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1I _cell.length_a 174.693 _cell.length_b 181.666 _cell.length_c 240.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 GA N N ? 18 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 IA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 IA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 484 n n FE NB HEC sing 485 n n FE NC HEC sing 486 n n FE ND HEC sing 487 n n CHA C1A HEC doub 488 n n CHA C4D HEC sing 489 n n CHA HHA HEC sing 490 n n CHB C4A HEC doub 491 n n CHB C1B HEC sing 492 n n CHB HHB HEC sing 493 n n CHC C4B HEC doub 494 n n CHC C1C HEC sing 495 n n CHC HHC HEC sing 496 n n CHD C4C HEC doub 497 n n CHD C1D HEC sing 498 n n CHD HHD HEC sing 499 n n NA C1A HEC sing 500 n y NA C4A HEC sing 501 n y C1A C2A HEC sing 502 n y C2A C3A HEC doub 503 n y C2A CAA HEC sing 504 n n C3A C4A HEC sing 505 n y C3A CMA HEC sing 506 n n CMA HMA1 HEC sing 507 n n CMA HMA2 HEC sing 508 n n CMA HMA3 HEC sing 509 n n CAA CBA HEC sing 510 n n CAA HAA1 HEC sing 511 n n CAA HAA2 HEC sing 512 n n CBA CGA HEC sing 513 n n CBA HBA1 HEC sing 514 n n CBA HBA2 HEC sing 515 n n CGA O1A HEC doub 516 n n CGA O2A HEC sing 517 n n O2A H2A HEC sing 518 n n NB C1B HEC sing 519 n y NB C4B HEC sing 520 n y C1B C2B HEC doub 521 n y C2B C3B HEC sing 522 n y C2B CMB HEC sing 523 n n C3B C4B HEC sing 524 n y C3B CAB HEC doub 525 e n CMB HMB1 HEC sing 526 n n CMB HMB2 HEC sing 527 n n CMB HMB3 HEC sing 528 n n CAB CBB HEC sing 529 n n CAB HAB HEC sing 530 n n CBB HBB1 HEC sing 531 n n CBB HBB2 HEC sing 532 n n CBB HBB3 HEC sing 533 n n NC C1C HEC sing 534 n y NC C4C HEC sing 535 n y C1C C2C HEC doub 536 n y C2C C3C HEC sing 537 n y C2C CMC HEC sing 538 n n C3C C4C HEC sing 539 n y C3C CAC HEC doub 540 e n CMC HMC1 HEC sing 541 n n CMC HMC2 HEC sing 542 n n CMC HMC3 HEC sing 543 n n CAC CBC HEC sing 544 n n CAC HAC HEC sing 545 n n CBC HBC1 HEC sing 546 n n CBC HBC2 HEC sing 547 n n CBC HBC3 HEC sing 548 n n ND C1D HEC sing 549 n y ND C4D HEC sing 550 n y C1D C2D HEC doub 551 n y C2D C3D HEC sing 552 n y C2D CMD HEC sing 553 n n C3D C4D HEC doub 554 n y C3D CAD HEC sing 555 n n CMD HMD1 HEC sing 556 n n CMD HMD2 HEC sing 557 n n CMD HMD3 HEC sing 558 n n CAD CBD HEC sing 559 n n CAD HAD1 HEC sing 560 n n CAD HAD2 HEC sing 561 n n CBD CGD HEC sing 562 n n CBD HBD1 HEC sing 563 n n CBD HBD2 HEC sing 564 n n CGD O1D HEC doub 565 n n CGD O2D HEC sing 566 n n O2D H2D HEC sing 567 n n # _atom_sites.entry_id 3H1I _atom_sites.fract_transf_matrix[1][1] 0.005724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3016 3016 UNL UNL . W 13 HEM C 1 501 501 HEM HEM . X 13 HEM C 1 502 502 HEM HEM . Y 14 SMA C 1 2001 2001 SMA SMA . Z 15 ANY C 1 2002 2002 ANY ANY . AA 16 CDL C 1 2004 2004 CDL CDL . BA 11 PEE C 1 2007 2007 PEE PEE . CA 12 UNL C 1 2010 2010 UNL UNL . DA 17 GOL C 1 2011 2011 GOL GOL . EA 12 UNL C 1 2104 2104 UNL UNL . FA 12 UNL C 1 3015 3015 UNL UNL . GA 18 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 19 FES E 1 501 501 FES FES . JA 11 PEE E 1 2005 2005 PEE PEE . KA 20 PLC E 1 2009 2009 PLC PLC . LA 12 UNL E 1 2105 2105 UNL UNL . MA 12 UNL E 1 3103 3103 UNL UNL . NA 11 PEE N 1 3008 3008 PEE PEE . OA 13 HEM P 1 501 501 HEM HEM . PA 13 HEM P 1 502 502 HEM HEM . QA 12 UNL P 1 2015 2015 UNL UNL . RA 14 SMA P 1 3001 3001 SMA SMA . SA 15 ANY P 1 3002 3002 ANY ANY . TA 16 CDL P 1 3004 3004 CDL CDL . UA 11 PEE P 1 3005 3005 PEE PEE . VA 11 PEE P 1 3007 3007 PEE PEE . WA 12 UNL P 1 3010 3010 UNL UNL . XA 17 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 3104 3104 UNL UNL . ZA 18 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 19 FES R 1 501 501 FES FES . CB 12 UNL R 1 2103 2103 UNL UNL . DB 20 PLC R 1 3009 3009 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . ZA 18 37.144 170.157 105.755 1 72.98 ? FE HEC 501 Q 1 HETATM 2 C CHA HEC . . . ZA 18 39.436 168.83 103.633 1 66.66 ? CHA HEC 501 Q 1 HETATM 3 C CHB HEC . . . ZA 18 37.55 167.61 107.825 1 65.15 ? CHB HEC 501 Q 1 HETATM 4 C CHC HEC . . . ZA 18 34.773 171.362 107.873 1 67.48 ? CHC HEC 501 Q 1 HETATM 5 C CHD HEC . . . ZA 18 36.706 172.71 103.744 1 70.93 ? CHD HEC 501 Q 1 HETATM 6 N NA HEC . . . ZA 18 38.286 168.569 105.727 1 68.28 ? NA HEC 501 Q 1 HETATM 7 C C1A HEC . . . ZA 18 39.168 168.128 104.767 1 66.68 ? C1A HEC 501 Q 1 HETATM 8 C C2A HEC . . . ZA 18 39.865 166.913 105.223 1 65.99 ? C2A HEC 501 Q 1 HETATM 9 C C3A HEC . . . ZA 18 39.27 166.587 106.373 1 65.29 ? C3A HEC 501 Q 1 HETATM 10 C C4A HEC . . . ZA 18 38.323 167.605 106.693 1 66 ? C4A HEC 501 Q 1 HETATM 11 C CMA HEC . . . ZA 18 39.638 165.413 107.246 1 64.3 ? CMA HEC 501 Q 1 HETATM 12 C CAA HEC . . . ZA 18 41.171 166.219 104.802 1 65.56 ? CAA HEC 501 Q 1 HETATM 13 C CBA HEC . . . ZA 18 41.718 166.336 103.386 1 65.77 ? CBA HEC 501 Q 1 HETATM 14 C CGA HEC . . . ZA 18 43.057 165.658 103.238 1 65.99 ? CGA HEC 501 Q 1 HETATM 15 O O1A HEC . . . ZA 18 43.638 165.726 102.13 1 66.27 ? O1A HEC 501 Q 1 HETATM 16 O O2A HEC . . . ZA 18 43.522 165.061 104.233 1 65.19 ? O2A HEC 501 Q 1 HETATM 17 N NB HEC . . . ZA 18 36.35 169.642 107.509 1 67.82 ? NB HEC 501 Q 1 HETATM 18 C C1B HEC . . . ZA 18 36.63 168.53 108.206 1 65.29 ? C1B HEC 501 Q 1 HETATM 19 C C2B HEC . . . ZA 18 35.815 168.43 109.348 1 65.38 ? C2B HEC 501 Q 1 HETATM 20 C C3B HEC . . . ZA 18 35.031 169.482 109.397 1 66.36 ? C3B HEC 501 Q 1 HETATM 21 C C4B HEC . . . ZA 18 35.375 170.24 108.254 1 66.71 ? C4B HEC 501 Q 1 HETATM 22 C CMB HEC . . . ZA 18 35.778 167.319 110.381 1 65.55 ? CMB HEC 501 Q 1 HETATM 23 C CAB HEC . . . ZA 18 33.848 169.83 110.278 1 69.69 ? CAB HEC 501 Q 1 HETATM 24 C CBB HEC . . . ZA 18 34.086 169.581 111.758 1 70.52 ? CBB HEC 501 Q 1 HETATM 25 N NC HEC . . . ZA 18 36.006 171.722 105.86 1 70.18 ? NC HEC 501 Q 1 HETATM 26 C C1C HEC . . . ZA 18 35.045 172.055 106.77 1 68.71 ? C1C HEC 501 Q 1 HETATM 27 C C2C HEC . . . ZA 18 34.275 173.154 106.342 1 70.12 ? C2C HEC 501 Q 1 HETATM 28 C C3C HEC . . . ZA 18 34.871 173.629 105.257 1 72.76 ? C3C HEC 501 Q 1 HETATM 29 C C4C HEC . . . ZA 18 35.945 172.708 104.925 1 71.41 ? C4C HEC 501 Q 1 HETATM 30 C CMC HEC . . . ZA 18 32.956 173.686 106.832 1 69.57 ? CMC HEC 501 Q 1 HETATM 31 C CAC HEC . . . ZA 18 34.467 174.755 104.283 1 75.17 ? CAC HEC 501 Q 1 HETATM 32 C CBC HEC . . . ZA 18 34.505 175.992 105.195 1 76.94 ? CBC HEC 501 Q 1 HETATM 33 N ND HEC . . . ZA 18 37.925 170.645 104.051 1 69.29 ? ND HEC 501 Q 1 HETATM 34 C C1D HEC . . . ZA 18 37.613 171.754 103.335 1 69.58 ? C1D HEC 501 Q 1 HETATM 35 C C2D HEC . . . ZA 18 38.472 171.891 102.198 1 69.78 ? C2D HEC 501 Q 1 HETATM 36 C C3D HEC . . . ZA 18 39.304 170.836 102.193 1 69.74 ? C3D HEC 501 Q 1 HETATM 37 C C4D HEC . . . ZA 18 38.896 170.03 103.329 1 67.88 ? C4D HEC 501 Q 1 HETATM 38 C CMD HEC . . . ZA 18 38.483 173.002 101.16 1 69.87 ? CMD HEC 501 Q 1 HETATM 39 C CAD HEC . . . ZA 18 40.368 170.55 101.092 1 70.98 ? CAD HEC 501 Q 1 HETATM 40 C CBD HEC . . . ZA 18 41.804 170.989 101.373 1 71.67 ? CBD HEC 501 Q 1 HETATM 41 C CGD HEC . . . ZA 18 42.818 170.35 100.438 1 72.01 ? CGD HEC 501 Q 1 HETATM 42 O O1D HEC . . . ZA 18 42.741 169.116 100.259 1 72.68 ? O1D HEC 501 Q 1 HETATM 43 O O2D HEC . . . ZA 18 43.695 171.065 99.899 1 71.55 ? O2D HEC 501 Q 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #