data_3H1J # _model_server_result.job_id '_Pl5od-h649OYXjcS_MFMw' _model_server_result.datetime_utc '2024-11-28 12:03:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":2009}' # _entry.id 3H1J # _exptl.entry_id 3H1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1J _cell.length_a 173.464 _cell.length_b 182.448 _cell.length_c 241.328 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 JA N N ? 20 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 826 n n C1 O3P PLC sing 827 n n C1 H11 PLC sing 828 n n C1 H12 PLC sing 829 n n C2 C3 PLC sing 830 n n C2 O2 PLC sing 831 n n C2 H2 PLC sing 832 n n C3 O3 PLC sing 833 n n C3 H31 PLC sing 834 n n C3 H32 PLC sing 835 n n C4 C5 PLC sing 836 n n C4 O4P PLC sing 837 n n C4 H41 PLC sing 838 n n C4 H42 PLC sing 839 n n C5 N PLC sing 840 n n C5 H51 PLC sing 841 n n C5 H52 PLC sing 842 n n C6 N PLC sing 843 n n C6 H61 PLC sing 844 n n C6 H62 PLC sing 845 n n C6 H63 PLC sing 846 n n C7 N PLC sing 847 n n C7 H71 PLC sing 848 n n C7 H72 PLC sing 849 n n C7 H73 PLC sing 850 n n C8 N PLC sing 851 n n C8 H81 PLC sing 852 n n C8 H82 PLC sing 853 n n C8 H83 PLC sing 854 n n C' C1' PLC sing 855 n n C' O' PLC doub 856 n n C' O2 PLC sing 857 n n C1' C2' PLC sing 858 n n C1' "H1'1" PLC sing 859 n n C1' "H1'2" PLC sing 860 n n C2' C3' PLC sing 861 n n C2' "H2'1" PLC sing 862 n n C2' "H2'2" PLC sing 863 n n C3' C4' PLC sing 864 n n C3' "H3'1" PLC sing 865 n n C3' "H3'2" PLC sing 866 n n C4' C5' PLC sing 867 n n C4' "H4'1" PLC sing 868 n n C4' "H4'2" PLC sing 869 n n C5' C6' PLC sing 870 n n C5' "H5'1" PLC sing 871 n n C5' "H5'2" PLC sing 872 n n C6' C7' PLC sing 873 n n C6' "H6'1" PLC sing 874 n n C6' "H6'2" PLC sing 875 n n C7' C8' PLC sing 876 n n C7' "H7'1" PLC sing 877 n n C7' "H7'2" PLC sing 878 n n C8' C9' PLC sing 879 n n C8' "H8'1" PLC sing 880 n n C8' "H8'2" PLC sing 881 n n C9' CA' PLC sing 882 n n C9' "H9'1" PLC sing 883 n n C9' "H9'2" PLC sing 884 n n CA' CB' PLC sing 885 n n CA' "HT'1" PLC sing 886 n n CA' "HT'2" PLC sing 887 n n CB' "HE'1" PLC sing 888 n n CB' "HE'2" PLC sing 889 n n CB' "HE'3" PLC sing 890 n n CB C1B PLC sing 891 n n CB OB PLC doub 892 n n CB O3 PLC sing 893 n n C1B C2B PLC sing 894 n n C1B H1A1 PLC sing 895 n n C1B H1A2 PLC sing 896 n n C2B C3B PLC sing 897 n n C2B H2A1 PLC sing 898 n n C2B H2A2 PLC sing 899 n n C3B C4B PLC sing 900 n n C3B H3A1 PLC sing 901 n n C3B H3A2 PLC sing 902 n n C4B C5B PLC sing 903 n n C4B H4A1 PLC sing 904 n n C4B H4A2 PLC sing 905 n n C5B C6B PLC sing 906 n n C5B H5A1 PLC sing 907 n n C5B H5A2 PLC sing 908 n n C6B C7B PLC sing 909 n n C6B H6A1 PLC sing 910 n n C6B H6A2 PLC sing 911 n n C7B C8B PLC sing 912 n n C7B H7A1 PLC sing 913 n n C7B H7A2 PLC sing 914 n n C8B C9B PLC sing 915 n n C8B H8A1 PLC sing 916 n n C8B H8A2 PLC sing 917 n n C9B CAA PLC sing 918 n n C9B H9A1 PLC sing 919 n n C9B H9A2 PLC sing 920 n n CAA CBA PLC sing 921 n n CAA HTA1 PLC sing 922 n n CAA HTA2 PLC sing 923 n n CBA HEA1 PLC sing 924 n n CBA HEA2 PLC sing 925 n n CBA HEA3 PLC sing 926 n n O1P P PLC doub 927 n n O2P P PLC sing 928 n n O2P HOP2 PLC sing 929 n n O3P P PLC sing 930 n n O4P P PLC sing 931 n n # _atom_sites.entry_id 3H1J _atom_sites.fract_transf_matrix[1][1] 0.005765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 UNL A 1 3016 3016 UNL UNL . V 12 HEM C 1 501 501 HEM HEM . W 12 HEM C 1 502 502 HEM HEM . X 13 SMA C 1 2001 2001 SMA SMA . Y 14 UQ C 1 2002 2002 UQ UQ . Z 15 PEE C 1 2007 2007 PEE PEE . AA 15 PEE C 1 2008 2008 PEE PEE . BA 11 UNL C 1 2010 2010 UNL UNL . CA 16 GOL C 1 2011 2011 GOL GOL . DA 11 UNL C 1 2104 2104 UNL UNL . EA 11 UNL C 1 3015 3015 UNL UNL . FA 17 HEC D 1 501 501 HEC HEC . GA 18 CDL D 1 2003 2003 CDL CDL . HA 19 FES E 1 501 501 FES FES . IA 15 PEE E 1 2005 2005 PEE PEE . JA 20 PLC E 1 2009 2009 PLC PLC . KA 11 UNL E 1 2105 2105 UNL UNL . LA 11 UNL E 1 3103 3103 UNL UNL . MA 18 CDL G 1 2004 2004 CDL CDL . NA 15 PEE N 1 3008 3008 PEE PEE . OA 12 HEM P 1 501 501 HEM HEM . PA 12 HEM P 1 502 502 HEM HEM . QA 11 UNL P 1 2015 2015 UNL UNL . RA 13 SMA P 1 3001 3001 SMA SMA . SA 14 UQ P 1 3002 3002 UQ UQ . TA 18 CDL P 1 3004 3004 CDL CDL . UA 15 PEE P 1 3007 3007 PEE PEE . VA 11 UNL P 1 3010 3010 UNL UNL . WA 16 GOL P 1 3011 3011 GOL GOL . XA 11 UNL P 1 3104 3104 UNL UNL . YA 17 HEC Q 1 501 501 HEC HEC . ZA 19 FES R 1 501 501 FES FES . AB 11 UNL R 1 2103 2103 UNL UNL . BB 15 PEE R 1 3005 3005 PEE PEE . CB 20 PLC R 1 3009 3009 PLC PLC . DB 18 CDL S 1 3003 3003 CDL CDL . EB 21 HOH B 1 1234 1234 HOH HOH . FB 21 HOH C 1 381 2 HOH HOH . FB 21 HOH C 2 382 108 HOH HOH . FB 21 HOH C 3 383 119 HOH HOH . FB 21 HOH C 4 384 168 HOH HOH . FB 21 HOH C 5 385 222 HOH HOH . FB 21 HOH C 6 1008 1008 HOH HOH . GB 21 HOH P 1 381 1 HOH HOH . GB 21 HOH P 2 382 28 HOH HOH . GB 21 HOH P 3 383 35 HOH HOH . GB 21 HOH P 4 384 109 HOH HOH . GB 21 HOH P 5 385 214 HOH HOH . GB 21 HOH P 6 959 959 HOH HOH . HB 21 HOH U 1 1233 1233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . JA 20 31.586 137.064 56.389 1 89.33 ? C1 PLC 2009 E 1 HETATM 2 C C2 PLC . . . JA 20 30.568 135.856 56.522 1 87.26 ? C2 PLC 2009 E 1 HETATM 3 C C3 PLC . . . JA 20 30.764 134.84 55.338 1 84.3 ? C3 PLC 2009 E 1 HETATM 4 C C4 PLC . . . JA 20 31.761 141.932 53.88 1 96.85 ? C4 PLC 2009 E 1 HETATM 5 C C5 PLC . . . JA 20 31.059 143.292 54.226 1 98.49 ? C5 PLC 2009 E 1 HETATM 6 C C6 PLC . . . JA 20 32.857 144.535 55.428 1 96.34 ? C6 PLC 2009 E 1 HETATM 7 C C7 PLC . . . JA 20 32.777 144.59 52.952 1 96.82 ? C7 PLC 2009 E 1 HETATM 8 C C8 PLC . . . JA 20 31.077 145.772 54.263 1 95.98 ? C8 PLC 2009 E 1 HETATM 9 C C' PLC . . . JA 20 29.751 135.339 58.955 1 82.32 ? C' PLC 2009 E 1 HETATM 10 C C1' PLC . . . JA 20 28.882 134.097 59.274 1 78.04 ? C1' PLC 2009 E 1 HETATM 11 C C2' PLC . . . JA 20 28.774 133.784 60.78 1 74.89 ? C2' PLC 2009 E 1 HETATM 12 C C3' PLC . . . JA 20 28.737 132.268 61.056 1 73.48 ? C3' PLC 2009 E 1 HETATM 13 C C4' PLC . . . JA 20 28.518 131.885 62.54 1 72.4 ? C4' PLC 2009 E 1 HETATM 14 C C5' PLC . . . JA 20 29.434 130.738 63.069 1 71.69 ? C5' PLC 2009 E 1 HETATM 15 C C6' PLC . . . JA 20 28.857 129.95 64.281 1 70.45 ? C6' PLC 2009 E 1 HETATM 16 C C7' PLC . . . JA 20 29.44 130.334 65.664 1 67.89 ? C7' PLC 2009 E 1 HETATM 17 C CB PLC . . . JA 20 30.83 132.451 55.895 1 81.96 ? CB PLC 2009 E 1 HETATM 18 C C1B PLC . . . JA 20 30.172 131.538 56.968 1 79.86 ? C1B PLC 2009 E 1 HETATM 19 C C2B PLC . . . JA 20 29.348 130.367 56.387 1 78.64 ? C2B PLC 2009 E 1 HETATM 20 C C3B PLC . . . JA 20 29.168 129.216 57.398 1 78 ? C3B PLC 2009 E 1 HETATM 21 C C4B PLC . . . JA 20 28.21 128.115 56.879 1 77.67 ? C4B PLC 2009 E 1 HETATM 22 C C5B PLC . . . JA 20 28.333 126.788 57.665 1 75.22 ? C5B PLC 2009 E 1 HETATM 23 O O' PLC . . . JA 20 29.632 136.379 59.627 1 82.97 ? O' PLC 2009 E 1 HETATM 24 O OB PLC . . . JA 20 31.941 132.203 55.424 1 84.51 ? OB PLC 2009 E 1 HETATM 25 O O2 PLC . . . JA 20 30.705 135.143 57.874 1 87.29 ? O2 PLC 2009 E 1 HETATM 26 O O3 PLC . . . JA 20 30.04 133.56 55.512 1 83.51 ? O3 PLC 2009 E 1 HETATM 27 O O1P PLC . . . JA 20 32.889 140.134 56.446 1 94.6 ? O1P PLC 2009 E 1 HETATM 28 O O2P PLC . . . JA 20 33.045 138.864 54.136 1 97.94 ? O2P PLC 2009 E 1 HETATM 29 O O3P PLC . . . JA 20 31.048 138.299 55.774 1 93.91 ? O3P PLC 2009 E 1 HETATM 30 O O4P PLC . . . JA 20 31.157 140.739 54.496 1 94.92 ? O4P PLC 2009 E 1 HETATM 31 N N PLC . . . JA 20 31.949 144.534 54.215 1 98.1 ? N PLC 2009 E 1 HETATM 32 P P PLC . . . JA 20 32.031 139.513 55.212 1 97.25 ? P PLC 2009 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #