data_3H1J
#
_model_server_result.job_id            39-U5XhoxDt7ggj3ev5mYQ 
_model_server_result.datetime_utc      '2024-11-24 18:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h1j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":2011}' 
#
_entry.id    3H1J 
#
_exptl.entry_id    3H1J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H1J 
_cell.length_a            173.464 
_cell.length_b            182.448 
_cell.length_c            241.328 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H1J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 CA N N 
? 16 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 388 n n 
C1 C2 GOL sing 389 n n 
C1 H11 GOL sing 390 n n 
C1 H12 GOL sing 391 n n 
O1 HO1 GOL sing 392 n n 
C2 O2 GOL sing 393 n n 
C2 C3 GOL sing 394 n n 
C2 H2 GOL sing 395 n n 
O2 HO2 GOL sing 396 n n 
C3 O3 GOL sing 397 n n 
C3 H31 GOL sing 398 n n 
C3 H32 GOL sing 399 n n 
O3 HO3 GOL sing 400 n n 
#
_atom_sites.entry_id                     3H1J 
_atom_sites.fract_transf_matrix[1][1]    0.005765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004144 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 UNL A 1 3016 3016 UNL UNL . 
V 12 HEM C 1 501 501 HEM HEM . 
W 12 HEM C 1 502 502 HEM HEM . 
X 13 SMA C 1 2001 2001 SMA SMA . 
Y 14 UQ C 1 2002 2002 UQ UQ . 
Z 15 PEE C 1 2007 2007 PEE PEE . 
AA 15 PEE C 1 2008 2008 PEE PEE . 
BA 11 UNL C 1 2010 2010 UNL UNL . 
CA 16 GOL C 1 2011 2011 GOL GOL . 
DA 11 UNL C 1 2104 2104 UNL UNL . 
EA 11 UNL C 1 3015 3015 UNL UNL . 
FA 17 HEC D 1 501 501 HEC HEC . 
GA 18 CDL D 1 2003 2003 CDL CDL . 
HA 19 FES E 1 501 501 FES FES . 
IA 15 PEE E 1 2005 2005 PEE PEE . 
JA 20 PLC E 1 2009 2009 PLC PLC . 
KA 11 UNL E 1 2105 2105 UNL UNL . 
LA 11 UNL E 1 3103 3103 UNL UNL . 
MA 18 CDL G 1 2004 2004 CDL CDL . 
NA 15 PEE N 1 3008 3008 PEE PEE . 
OA 12 HEM P 1 501 501 HEM HEM . 
PA 12 HEM P 1 502 502 HEM HEM . 
QA 11 UNL P 1 2015 2015 UNL UNL . 
RA 13 SMA P 1 3001 3001 SMA SMA . 
SA 14 UQ P 1 3002 3002 UQ UQ . 
TA 18 CDL P 1 3004 3004 CDL CDL . 
UA 15 PEE P 1 3007 3007 PEE PEE . 
VA 11 UNL P 1 3010 3010 UNL UNL . 
WA 16 GOL P 1 3011 3011 GOL GOL . 
XA 11 UNL P 1 3104 3104 UNL UNL . 
YA 17 HEC Q 1 501 501 HEC HEC . 
ZA 19 FES R 1 501 501 FES FES . 
AB 11 UNL R 1 2103 2103 UNL UNL . 
BB 15 PEE R 1 3005 3005 PEE PEE . 
CB 20 PLC R 1 3009 3009 PLC PLC . 
DB 18 CDL S 1 3003 3003 CDL CDL . 
EB 21 HOH B 1 1234 1234 HOH HOH . 
FB 21 HOH C 1 381 2 HOH HOH . 
FB 21 HOH C 2 382 108 HOH HOH . 
FB 21 HOH C 3 383 119 HOH HOH . 
FB 21 HOH C 4 384 168 HOH HOH . 
FB 21 HOH C 5 385 222 HOH HOH . 
FB 21 HOH C 6 1008 1008 HOH HOH . 
GB 21 HOH P 1 381 1 HOH HOH . 
GB 21 HOH P 2 382 28 HOH HOH . 
GB 21 HOH P 3 383 35 HOH HOH . 
GB 21 HOH P 4 384 109 HOH HOH . 
GB 21 HOH P 5 385 214 HOH HOH . 
GB 21 HOH P 6 959 959 HOH HOH . 
HB 21 HOH U 1 1233 1233 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . CA 16 16.273 145.255 72.466 1 80.54 ? C1 GOL 2011 C 1 
HETATM 2 O O1 GOL . . . CA 16 15.999 144.008 71.76 1 81.57 ? O1 GOL 2011 C 1 
HETATM 3 C C2 GOL . . . CA 16 17.614 145.925 72.058 1 81.16 ? C2 GOL 2011 C 1 
HETATM 4 O O2 GOL . . . CA 16 18.043 146.906 73.084 1 79.87 ? O2 GOL 2011 C 1 
HETATM 5 C C3 GOL . . . CA 16 17.549 146.569 70.639 1 82.12 ? C3 GOL 2011 C 1 
HETATM 6 O O3 GOL . . . CA 16 18.824 146.507 69.899 1 83.8 ? O3 GOL 2011 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#