data_3H1J # _model_server_result.job_id UPoHZR5JjebhorZpsHnU-A _model_server_result.datetime_utc '2024-11-24 18:55:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":3001}' # _entry.id 3H1J # _exptl.entry_id 3H1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.65 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STIGMATELLIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1J _cell.length_a 173.464 _cell.length_b 182.448 _cell.length_c 241.328 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 FA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 HA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 HA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 OA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 PA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 N SD MET 160 Q MET 160 1_555 YA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 ZA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 ZA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C30 H42 O7' _chem_comp.formula_weight 514.65 _chem_comp.id SMA _chem_comp.mon_nstd_flag . _chem_comp.name 'STIGMATELLIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7M O7 SMA sing 962 n n O7 C7 SMA sing 963 n n O8 C8 SMA sing 964 n n C7 C8 SMA doub 965 n y C7 C6 SMA sing 966 n y C8 C8A SMA sing 967 n y C6 C5 SMA doub 968 n y C8A O1 SMA sing 969 n n C8A C4A SMA doub 970 n y O1 C2 SMA sing 971 n n C22 C11 SMA sing 972 n n C9 C2 SMA sing 973 n n C9 C10 SMA sing 974 n n C5 C4A SMA sing 975 n y C5 O5 SMA sing 976 n n C4A C4 SMA sing 977 n n C2 C3 SMA doub 978 n n C5M O5 SMA sing 979 n n C3 C4 SMA sing 980 n n C3 C3M SMA sing 981 n n C4 O4 SMA doub 982 n n C11 C10 SMA sing 983 n n C11 C12 SMA sing 984 n n C24 C13 SMA sing 985 n n C12 C13 SMA sing 986 n n C12 O12 SMA sing 987 n n C13 C14 SMA sing 988 n n O12 C23 SMA sing 989 n n O14 C25 SMA sing 990 n n O14 C14 SMA sing 991 n n C14 C15 SMA sing 992 n n C15 C16 SMA doub 993 e n C16 C17 SMA sing 994 n n C17 C18 SMA doub 995 e n C18 C19 SMA sing 996 n n C20 C19 SMA doub 997 e n C20 C21 SMA sing 998 n n C19 C26 SMA sing 999 n n C3M H1 SMA sing 1000 n n C3M H2 SMA sing 1001 n n C3M H3 SMA sing 1002 n n C5M H4 SMA sing 1003 n n C5M H5 SMA sing 1004 n n C5M H6 SMA sing 1005 n n C6 H7 SMA sing 1006 n n C7M H8 SMA sing 1007 n n C7M H9 SMA sing 1008 n n C7M H10 SMA sing 1009 n n C9 H11 SMA sing 1010 n n C9 H12 SMA sing 1011 n n C10 H13 SMA sing 1012 n n C10 H14 SMA sing 1013 n n C11 H15 SMA sing 1014 n n C12 H16 SMA sing 1015 n n C13 H17 SMA sing 1016 n n C14 H18 SMA sing 1017 n n C15 H19 SMA sing 1018 n n C16 H21 SMA sing 1019 n n C17 H22 SMA sing 1020 n n C18 H23 SMA sing 1021 n n C20 H25 SMA sing 1022 n n C21 H26 SMA sing 1023 n n C21 H27 SMA sing 1024 n n C21 H28 SMA sing 1025 n n C22 H29 SMA sing 1026 n n C22 H30 SMA sing 1027 n n C22 H31 SMA sing 1028 n n C23 H32 SMA sing 1029 n n C23 H33 SMA sing 1030 n n C23 H34 SMA sing 1031 n n C24 H35 SMA sing 1032 n n C24 H36 SMA sing 1033 n n C24 H37 SMA sing 1034 n n C25 H38 SMA sing 1035 n n C25 H39 SMA sing 1036 n n C25 H40 SMA sing 1037 n n C26 H41 SMA sing 1038 n n C26 H42 SMA sing 1039 n n C26 H43 SMA sing 1040 n n O8 H44 SMA sing 1041 n n # _atom_sites.entry_id 3H1J _atom_sites.fract_transf_matrix[1][1] 0.005765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 UNL A 1 3016 3016 UNL UNL . V 12 HEM C 1 501 501 HEM HEM . W 12 HEM C 1 502 502 HEM HEM . X 13 SMA C 1 2001 2001 SMA SMA . Y 14 UQ C 1 2002 2002 UQ UQ . Z 15 PEE C 1 2007 2007 PEE PEE . AA 15 PEE C 1 2008 2008 PEE PEE . BA 11 UNL C 1 2010 2010 UNL UNL . CA 16 GOL C 1 2011 2011 GOL GOL . DA 11 UNL C 1 2104 2104 UNL UNL . EA 11 UNL C 1 3015 3015 UNL UNL . FA 17 HEC D 1 501 501 HEC HEC . GA 18 CDL D 1 2003 2003 CDL CDL . HA 19 FES E 1 501 501 FES FES . IA 15 PEE E 1 2005 2005 PEE PEE . JA 20 PLC E 1 2009 2009 PLC PLC . KA 11 UNL E 1 2105 2105 UNL UNL . LA 11 UNL E 1 3103 3103 UNL UNL . MA 18 CDL G 1 2004 2004 CDL CDL . NA 15 PEE N 1 3008 3008 PEE PEE . OA 12 HEM P 1 501 501 HEM HEM . PA 12 HEM P 1 502 502 HEM HEM . QA 11 UNL P 1 2015 2015 UNL UNL . RA 13 SMA P 1 3001 3001 SMA SMA . SA 14 UQ P 1 3002 3002 UQ UQ . TA 18 CDL P 1 3004 3004 CDL CDL . UA 15 PEE P 1 3007 3007 PEE PEE . VA 11 UNL P 1 3010 3010 UNL UNL . WA 16 GOL P 1 3011 3011 GOL GOL . XA 11 UNL P 1 3104 3104 UNL UNL . YA 17 HEC Q 1 501 501 HEC HEC . ZA 19 FES R 1 501 501 FES FES . AB 11 UNL R 1 2103 2103 UNL UNL . BB 15 PEE R 1 3005 3005 PEE PEE . CB 20 PLC R 1 3009 3009 PLC PLC . DB 18 CDL S 1 3003 3003 CDL CDL . EB 21 HOH B 1 1234 1234 HOH HOH . FB 21 HOH C 1 381 2 HOH HOH . FB 21 HOH C 2 382 108 HOH HOH . FB 21 HOH C 3 383 119 HOH HOH . FB 21 HOH C 4 384 168 HOH HOH . FB 21 HOH C 5 385 222 HOH HOH . FB 21 HOH C 6 1008 1008 HOH HOH . GB 21 HOH P 1 381 1 HOH HOH . GB 21 HOH P 2 382 28 HOH HOH . GB 21 HOH P 3 383 35 HOH HOH . GB 21 HOH P 4 384 109 HOH HOH . GB 21 HOH P 5 385 214 HOH HOH . GB 21 HOH P 6 959 959 HOH HOH . HB 21 HOH U 1 1233 1233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 SMA . . . RA 13 52.907 144.857 88.612 1 74.49 ? C2 SMA 3001 P 1 HETATM 2 C C3 SMA . . . RA 13 53.866 145.636 87.986 1 74.49 ? C3 SMA 3001 P 1 HETATM 3 C C3M SMA . . . RA 13 55.052 145.05 87.294 1 74.67 ? C3M SMA 3001 P 1 HETATM 4 C C4 SMA . . . RA 13 53.751 147.14 87.996 1 75.47 ? C4 SMA 3001 P 1 HETATM 5 C C4A SMA . . . RA 13 52.562 147.699 88.712 1 75.01 ? C4A SMA 3001 P 1 HETATM 6 C C5 SMA . . . RA 13 52.314 149.124 88.835 1 75.73 ? C5 SMA 3001 P 1 HETATM 7 C C5M SMA . . . RA 13 53.167 151.363 88.31 1 76.99 ? C5M SMA 3001 P 1 HETATM 8 C C6 SMA . . . RA 13 51.149 149.61 89.533 1 74.69 ? C6 SMA 3001 P 1 HETATM 9 C C7 SMA . . . RA 13 50.219 148.696 90.112 1 74.67 ? C7 SMA 3001 P 1 HETATM 10 C C7M SMA . . . RA 13 49.006 149.076 92.22 1 73.83 ? C7M SMA 3001 P 1 HETATM 11 C C8 SMA . . . RA 13 50.453 147.263 90.003 1 74.25 ? C8 SMA 3001 P 1 HETATM 12 C C8A SMA . . . RA 13 51.62 146.811 89.311 1 74.05 ? C8A SMA 3001 P 1 HETATM 13 C C9 SMA . . . RA 13 52.832 143.346 88.767 1 74.58 ? C9 SMA 3001 P 1 HETATM 14 C C10 SMA . . . RA 13 52.766 142.465 87.518 1 74.55 ? C10 SMA 3001 P 1 HETATM 15 C C11 SMA . . . RA 13 52.281 141.056 87.921 1 73.75 ? C11 SMA 3001 P 1 HETATM 16 C C12 SMA . . . RA 13 51.994 140.129 86.707 1 73.3 ? C12 SMA 3001 P 1 HETATM 17 C C13 SMA . . . RA 13 50.76 140.578 85.859 1 73.09 ? C13 SMA 3001 P 1 HETATM 18 C C14 SMA . . . RA 13 50.495 139.587 84.656 1 73.19 ? C14 SMA 3001 P 1 HETATM 19 C C15 SMA . . . RA 13 49.653 140.237 83.595 1 72.76 ? C15 SMA 3001 P 1 HETATM 20 C C16 SMA . . . RA 13 48.374 139.94 83.293 1 71.9 ? C16 SMA 3001 P 1 HETATM 21 C C17 SMA . . . RA 13 47.58 140.77 82.423 1 71.42 ? C17 SMA 3001 P 1 HETATM 22 C C18 SMA . . . RA 13 46.299 140.493 82.104 1 70.08 ? C18 SMA 3001 P 1 HETATM 23 C C19 SMA . . . RA 13 45.463 141.265 81.184 1 69.1 ? C19 SMA 3001 P 1 HETATM 24 C C20 SMA . . . RA 13 44.138 141.011 81.146 1 67.96 ? C20 SMA 3001 P 1 HETATM 25 C C21 SMA . . . RA 13 43.14 141.684 80.286 1 68.15 ? C21 SMA 3001 P 1 HETATM 26 C C22 SMA . . . RA 13 53.282 140.375 88.853 1 73.4 ? C22 SMA 3001 P 1 HETATM 27 C C23 SMA . . . RA 13 53.808 138.815 85.764 1 71.66 ? C23 SMA 3001 P 1 HETATM 28 C C24 SMA . . . RA 13 49.529 140.7 86.764 1 72.91 ? C24 SMA 3001 P 1 HETATM 29 C C25 SMA . . . RA 13 50.378 137.183 84.575 1 71.79 ? C25 SMA 3001 P 1 HETATM 30 C C26 SMA . . . RA 13 46.127 142.303 80.327 1 69.86 ? C26 SMA 3001 P 1 HETATM 31 O O1 SMA . . . RA 13 51.785 145.42 89.266 1 74.86 ? O1 SMA 3001 P 1 HETATM 32 O O4 SMA . . . RA 13 54.604 147.859 87.449 1 78 ? O4 SMA 3001 P 1 HETATM 33 O O5 SMA . . . RA 13 53.292 149.939 88.238 1 75.95 ? O5 SMA 3001 P 1 HETATM 34 O O7 SMA . . . RA 13 49.058 149.107 90.792 1 75.41 ? O7 SMA 3001 P 1 HETATM 35 O O8 SMA . . . RA 13 49.538 146.397 90.574 1 74.26 ? O8 SMA 3001 P 1 HETATM 36 O O12 SMA . . . RA 13 53.16 140.092 85.843 1 73.68 ? O12 SMA 3001 P 1 HETATM 37 O O14 SMA . . . RA 13 49.888 138.373 85.184 1 73.05 ? O14 SMA 3001 P 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #