data_3H1K # _model_server_result.job_id 4odXHCy-hsU7lwrbuUST9g _model_server_result.datetime_utc '2024-10-14 05:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":2001}' # _entry.id 3H1K # _exptl.entry_id 3H1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.271 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2E)-{2-[(4-iodo-2,5-dimethylphenoxy)methyl]phenyl}(methoxyimino)ethanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1K _cell.length_a 171.717 _cell.length_b 181.297 _cell.length_c 241.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc5 C OD2 ASP 253 C ASP 253 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 C OE1 GLU 255 C GLU 255 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 C NE2 HIS 268 C HIS 268 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc8 DA ZN ZN . C ZN 2012 1_555 D NE2 HIS 121 D HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc9 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc10 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc11 E SG CYS 139 E CYS 139 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 E ND1 HIS 141 E HIS 141 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc13 E SG CYS 158 E CYS 158 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 E ND1 HIS 161 E HIS 161 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc15 M NE2 HIS 84 P HIS 84 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc16 M NE2 HIS 98 P HIS 98 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc17 M NE2 HIS 183 P HIS 183 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc18 M NE2 HIS 197 P HIS 197 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc19 M OE1 GLU 255 P GLU 255 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc20 M NE2 HIS 268 P HIS 268 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc21 VA ZN ZN . P ZN 3012 1_555 N NE2 HIS 121 Q HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc22 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc23 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc24 O SG CYS 139 R CYS 139 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc25 O ND1 HIS 141 R HIS 141 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc26 O SG CYS 158 R CYS 158 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc27 O ND1 HIS 161 R HIS 161 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C19 H20 I N O4' _chem_comp.formula_weight 453.271 _chem_comp.id IKR _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2E)-{2-[(4-iodo-2,5-dimethylphenoxy)methyl]phenyl}(methoxyimino)ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IKR doub 638 n y C1 C6 IKR sing 639 n y C1 I1 IKR sing 640 n n C2 C3 IKR sing 641 n y C2 C40 IKR sing 642 n n C3 C4 IKR doub 643 n y C4 C5 IKR sing 644 n y C4 O15 IKR sing 645 n n C5 C6 IKR doub 646 n y C5 C11 IKR sing 647 n n O15 C16 IKR sing 648 n n C16 C17 IKR sing 649 n n C17 C20 IKR doub 650 n y C17 C24 IKR sing 651 n y C20 C21 IKR sing 652 n y C20 C29 IKR sing 653 n n C21 C22 IKR doub 654 n y C22 C23 IKR sing 655 n y C23 C24 IKR doub 656 n y C29 C30 IKR sing 657 n n C29 N37 IKR doub 658 n n C30 O31 IKR sing 659 n n C30 O36 IKR doub 660 n n O31 C32 IKR sing 661 n n N37 O38 IKR sing 662 n n O38 C39 IKR sing 663 n n C3 H3 IKR sing 664 n n C6 H6 IKR sing 665 n n C11 H11 IKR sing 666 n n C11 H11A IKR sing 667 n n C11 H11B IKR sing 668 n n C16 H16 IKR sing 669 e n C16 H16A IKR sing 670 n n C21 H21 IKR sing 671 n n C22 H22 IKR sing 672 n n C23 H23 IKR sing 673 n n C24 H24 IKR sing 674 n n C32 H32 IKR sing 675 n n C32 H32A IKR sing 676 n n C32 H32B IKR sing 677 n n C39 H39 IKR sing 678 n n C39 H39A IKR sing 679 n n C39 H39B IKR sing 680 n n C40 H40 IKR sing 681 n n C40 H40A IKR sing 682 n n C40 H40B IKR sing 683 n n # _atom_sites.entry_id 3H1K _atom_sites.fract_transf_matrix[1][1] 0.005824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3284 3284 UNL UNL . W 12 UNL A 1 3231 3231 UNL UNL . X 13 HEM C 1 501 501 HEM HEM . Y 13 HEM C 1 502 502 HEM HEM . Z 14 IKR C 1 2001 2001 IKR IKR . AA 15 UQ C 1 2002 2002 UQ UQ . BA 16 CDL C 1 2004 2004 CDL CDL . CA 11 PEE C 1 2007 2007 PEE PEE . DA 17 ZN C 1 2012 2012 ZN ZN . EA 18 GOL C 1 2011 2011 GOL GOL . FA 12 UNL C 1 4234 4234 UNL UNL . GA 19 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 20 BOG D 1 2009 2009 BOG BOG . JA 20 BOG D 1 2091 2091 BOG BOG . KA 21 FES E 1 501 501 FES FES . LA 11 PEE E 1 2005 2005 PEE PEE . MA 12 UNL N 1 4231 4231 UNL UNL . NA 13 HEM P 1 501 501 HEM HEM . OA 13 HEM P 1 502 502 HEM HEM . PA 20 BOG P 1 2010 2010 BOG BOG . QA 14 IKR P 1 3001 3001 IKR IKR . RA 15 UQ P 1 3002 3002 UQ UQ . SA 16 CDL P 1 3004 3004 CDL CDL . TA 11 PEE P 1 3007 3007 PEE PEE . UA 11 PEE P 1 3008 3008 PEE PEE . VA 17 ZN P 1 3012 3012 ZN ZN . WA 20 BOG P 1 3091 3091 BOG BOG . XA 18 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 4236 4236 UNL UNL . ZA 19 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 20 BOG Q 1 3009 3009 BOG BOG . CB 21 FES R 1 501 501 FES FES . DB 11 PEE R 1 3005 3005 PEE PEE . EB 22 HOH A 1 1230 1230 HOH HOH . FB 22 HOH C 1 381 381 HOH HOH . FB 22 HOH C 2 382 382 HOH HOH . FB 22 HOH C 3 383 383 HOH HOH . FB 22 HOH C 4 384 384 HOH HOH . FB 22 HOH C 5 385 385 HOH HOH . FB 22 HOH C 6 1008 1008 HOH HOH . FB 22 HOH C 7 1238 1238 HOH HOH . GB 22 HOH E 1 1289 1289 HOH HOH . HB 22 HOH P 1 381 381 HOH HOH . HB 22 HOH P 2 382 382 HOH HOH . HB 22 HOH P 3 383 383 HOH HOH . HB 22 HOH P 4 384 384 HOH HOH . HB 22 HOH P 5 385 385 HOH HOH . HB 22 HOH P 6 959 959 HOH HOH . HB 22 HOH P 7 1239 1239 HOH HOH . IB 22 HOH R 1 1240 1240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IKR . . . Z 14 9.079 127.682 82.377 1 71.26 ? C1 IKR 2001 C 1 HETATM 2 C C2 IKR . . . Z 14 9.943 128.805 82.491 1 69.64 ? C2 IKR 2001 C 1 HETATM 3 C C3 IKR . . . Z 14 9.48 130.063 82.109 1 66.89 ? C3 IKR 2001 C 1 HETATM 4 C C4 IKR . . . Z 14 8.149 130.211 81.611 1 66.16 ? C4 IKR 2001 C 1 HETATM 5 C C5 IKR . . . Z 14 7.286 129.093 81.496 1 66.91 ? C5 IKR 2001 C 1 HETATM 6 C C6 IKR . . . Z 14 7.764 127.833 81.884 1 69.55 ? C6 IKR 2001 C 1 HETATM 7 C C11 IKR . . . Z 14 5.889 129.207 80.983 1 67.1 ? C11 IKR 2001 C 1 HETATM 8 O O15 IKR . . . Z 14 7.692 131.444 81.241 1 65.18 ? O15 IKR 2001 C 1 HETATM 9 C C16 IKR . . . Z 14 8.622 132.517 81.365 1 65.02 ? C16 IKR 2001 C 1 HETATM 10 C C17 IKR . . . Z 14 8.108 133.656 80.563 1 65.95 ? C17 IKR 2001 C 1 HETATM 11 C C20 IKR . . . Z 14 8.967 134.527 79.811 1 66.72 ? C20 IKR 2001 C 1 HETATM 12 C C21 IKR . . . Z 14 8.422 135.606 79.06 1 68.31 ? C21 IKR 2001 C 1 HETATM 13 C C22 IKR . . . Z 14 7.015 135.829 79.049 1 69.83 ? C22 IKR 2001 C 1 HETATM 14 C C23 IKR . . . Z 14 6.178 134.966 79.791 1 68.71 ? C23 IKR 2001 C 1 HETATM 15 C C24 IKR . . . Z 14 6.696 133.898 80.536 1 66.84 ? C24 IKR 2001 C 1 HETATM 16 C C29 IKR . . . Z 14 10.445 134.378 79.757 1 67.29 ? C29 IKR 2001 C 1 HETATM 17 C C30 IKR . . . Z 14 10.99 133.579 78.619 1 66.91 ? C30 IKR 2001 C 1 HETATM 18 O O31 IKR . . . Z 14 12.338 133.549 78.718 1 66.9 ? O31 IKR 2001 C 1 HETATM 19 C C32 IKR . . . Z 14 12.996 132.802 77.69 1 67.07 ? C32 IKR 2001 C 1 HETATM 20 O O36 IKR . . . Z 14 10.271 133.068 77.788 1 67.86 ? O36 IKR 2001 C 1 HETATM 21 N N37 IKR . . . Z 14 11.322 134.862 80.579 1 70.86 ? N37 IKR 2001 C 1 HETATM 22 O O38 IKR . . . Z 14 10.74 135.595 81.618 1 75.69 ? O38 IKR 2001 C 1 HETATM 23 C C39 IKR . . . Z 14 11.771 136.098 82.453 1 76.84 ? C39 IKR 2001 C 1 HETATM 24 C C40 IKR . . . Z 14 11.422 128.812 83.019 1 67.84 ? C40 IKR 2001 C 1 HETATM 25 I I1 IKR . . . Z 14 9.758 125.822 82.938 1 79.99 ? I1 IKR 2001 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #