data_3H1K # _model_server_result.job_id VdpYV53DXqbFRhYkMXStAQ _model_server_result.datetime_utc '2024-11-23 18:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":3009}' # _entry.id 3H1K # _exptl.entry_id 3H1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 20 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H1K _cell.length_a 171.717 _cell.length_b 181.297 _cell.length_c 241.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 IA N N ? 20 JA N N ? 20 PA N N ? 20 WA N N ? 20 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc5 C OD2 ASP 253 C ASP 253 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 C OE1 GLU 255 C GLU 255 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 C NE2 HIS 268 C HIS 268 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc8 DA ZN ZN . C ZN 2012 1_555 D NE2 HIS 121 D HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc9 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc10 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc11 E SG CYS 139 E CYS 139 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 E ND1 HIS 141 E HIS 141 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc13 E SG CYS 158 E CYS 158 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 E ND1 HIS 161 E HIS 161 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc15 M NE2 HIS 84 P HIS 84 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc16 M NE2 HIS 98 P HIS 98 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc17 M NE2 HIS 183 P HIS 183 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc18 M NE2 HIS 197 P HIS 197 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc19 M OE1 GLU 255 P GLU 255 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc20 M NE2 HIS 268 P HIS 268 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc21 VA ZN ZN . P ZN 3012 1_555 N NE2 HIS 121 Q HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc22 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc23 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc24 O SG CYS 139 R CYS 139 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc25 O ND1 HIS 141 R HIS 141 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc26 O SG CYS 158 R CYS 158 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc27 O ND1 HIS 161 R HIS 161 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3H1K _atom_sites.fract_transf_matrix[1][1] 0.005824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 PEE A 1 2008 2008 PEE PEE . V 12 UNL A 1 3284 3284 UNL UNL . W 12 UNL A 1 3231 3231 UNL UNL . X 13 HEM C 1 501 501 HEM HEM . Y 13 HEM C 1 502 502 HEM HEM . Z 14 IKR C 1 2001 2001 IKR IKR . AA 15 UQ C 1 2002 2002 UQ UQ . BA 16 CDL C 1 2004 2004 CDL CDL . CA 11 PEE C 1 2007 2007 PEE PEE . DA 17 ZN C 1 2012 2012 ZN ZN . EA 18 GOL C 1 2011 2011 GOL GOL . FA 12 UNL C 1 4234 4234 UNL UNL . GA 19 HEC D 1 501 501 HEC HEC . HA 16 CDL D 1 2003 2003 CDL CDL . IA 20 BOG D 1 2009 2009 BOG BOG . JA 20 BOG D 1 2091 2091 BOG BOG . KA 21 FES E 1 501 501 FES FES . LA 11 PEE E 1 2005 2005 PEE PEE . MA 12 UNL N 1 4231 4231 UNL UNL . NA 13 HEM P 1 501 501 HEM HEM . OA 13 HEM P 1 502 502 HEM HEM . PA 20 BOG P 1 2010 2010 BOG BOG . QA 14 IKR P 1 3001 3001 IKR IKR . RA 15 UQ P 1 3002 3002 UQ UQ . SA 16 CDL P 1 3004 3004 CDL CDL . TA 11 PEE P 1 3007 3007 PEE PEE . UA 11 PEE P 1 3008 3008 PEE PEE . VA 17 ZN P 1 3012 3012 ZN ZN . WA 20 BOG P 1 3091 3091 BOG BOG . XA 18 GOL P 1 3011 3011 GOL GOL . YA 12 UNL P 1 4236 4236 UNL UNL . ZA 19 HEC Q 1 501 501 HEC HEC . AB 16 CDL Q 1 3003 3003 CDL CDL . BB 20 BOG Q 1 3009 3009 BOG BOG . CB 21 FES R 1 501 501 FES FES . DB 11 PEE R 1 3005 3005 PEE PEE . EB 22 HOH A 1 1230 1230 HOH HOH . FB 22 HOH C 1 381 381 HOH HOH . FB 22 HOH C 2 382 382 HOH HOH . FB 22 HOH C 3 383 383 HOH HOH . FB 22 HOH C 4 384 384 HOH HOH . FB 22 HOH C 5 385 385 HOH HOH . FB 22 HOH C 6 1008 1008 HOH HOH . FB 22 HOH C 7 1238 1238 HOH HOH . GB 22 HOH E 1 1289 1289 HOH HOH . HB 22 HOH P 1 381 381 HOH HOH . HB 22 HOH P 2 382 382 HOH HOH . HB 22 HOH P 3 383 383 HOH HOH . HB 22 HOH P 4 384 384 HOH HOH . HB 22 HOH P 5 385 385 HOH HOH . HB 22 HOH P 6 959 959 HOH HOH . HB 22 HOH P 7 1239 1239 HOH HOH . IB 22 HOH R 1 1240 1240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . BB 20 26.739 136.069 114.945 1 118.93 ? C1 BOG 3009 Q 1 HETATM 2 O O1 BOG . . . BB 20 27.623 135.043 115.358 1 117.66 ? O1 BOG 3009 Q 1 HETATM 3 C C2 BOG . . . BB 20 25.243 135.628 115.136 1 119.52 ? C2 BOG 3009 Q 1 HETATM 4 O O2 BOG . . . BB 20 24.952 134.47 114.366 1 120.37 ? O2 BOG 3009 Q 1 HETATM 5 C C3 BOG . . . BB 20 24.306 136.77 114.718 1 120.02 ? C3 BOG 3009 Q 1 HETATM 6 O O3 BOG . . . BB 20 22.95 136.384 114.892 1 119.36 ? O3 BOG 3009 Q 1 HETATM 7 C C4 BOG . . . BB 20 24.629 138.014 115.573 1 120.29 ? C4 BOG 3009 Q 1 HETATM 8 O O4 BOG . . . BB 20 23.767 139.109 115.22 1 121.78 ? O4 BOG 3009 Q 1 HETATM 9 C C5 BOG . . . BB 20 26.133 138.417 115.376 1 119.57 ? C5 BOG 3009 Q 1 HETATM 10 O O5 BOG . . . BB 20 27.018 137.286 115.725 1 119.6 ? O5 BOG 3009 Q 1 HETATM 11 C C6 BOG . . . BB 20 26.53 139.626 116.244 1 119.46 ? C6 BOG 3009 Q 1 HETATM 12 O O6 BOG . . . BB 20 25.981 139.557 117.572 1 118.79 ? O6 BOG 3009 Q 1 HETATM 13 C C1' BOG . . . BB 20 28.358 134.25 114.374 1 115.22 ? C1' BOG 3009 Q 1 HETATM 14 C C2' BOG . . . BB 20 29.709 133.824 114.973 1 113.55 ? C2' BOG 3009 Q 1 HETATM 15 C C3' BOG . . . BB 20 29.989 132.334 114.861 1 111.21 ? C3' BOG 3009 Q 1 HETATM 16 C C4' BOG . . . BB 20 31.501 132.129 114.822 1 108.85 ? C4' BOG 3009 Q 1 HETATM 17 C C5' BOG . . . BB 20 31.916 130.902 114.013 1 107.41 ? C5' BOG 3009 Q 1 HETATM 18 C C6' BOG . . . BB 20 33.442 130.716 113.98 1 107.13 ? C6' BOG 3009 Q 1 HETATM 19 C C7' BOG . . . BB 20 33.817 129.353 113.401 1 106.06 ? C7' BOG 3009 Q 1 HETATM 20 C C8' BOG . . . BB 20 35.31 129.249 113.4 1 103.58 ? C8' BOG 3009 Q 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #