data_3H1K
#
_model_server_result.job_id            iy6bAfX5muErUVzARCRCmA 
_model_server_result.datetime_utc      '2024-11-27 10:06:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":3011}' 
#
_entry.id    3H1K 
#
_exptl.entry_id    3H1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H1K 
_cell.length_a            171.717 
_cell.length_b            181.297 
_cell.length_c            241.288 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 EA N N 
? 18 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc5 C OD2 ASP 253 C ASP 253 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc6 C OE1 GLU 255 C GLU 255 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc7 C NE2 HIS 268 C HIS 268 1_555 DA ZN ZN . C ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc8 DA ZN ZN . C ZN 2012 1_555 D NE2 HIS 121 D HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc9 D NE2 HIS 41 D HIS 41 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc10 D SD MET 160 D MET 160 1_555 GA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc11 E SG CYS 139 E CYS 139 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc12 E ND1 HIS 141 E HIS 141 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc13 E SG CYS 158 E CYS 158 1_555 KA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc14 E ND1 HIS 161 E HIS 161 1_555 KA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc15 M NE2 HIS 84 P HIS 84 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc16 M NE2 HIS 98 P HIS 98 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc17 M NE2 HIS 183 P HIS 183 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc18 M NE2 HIS 197 P HIS 197 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc19 M OE1 GLU 255 P GLU 255 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc20 M NE2 HIS 268 P HIS 268 1_555 VA ZN ZN . P ZN 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc21 VA ZN ZN . P ZN 3012 1_555 N NE2 HIS 121 Q HIS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc22 N NE2 HIS 41 Q HIS 41 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc23 N SD MET 160 Q MET 160 1_555 ZA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc24 O SG CYS 139 R CYS 139 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc25 O ND1 HIS 141 R HIS 141 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc26 O SG CYS 158 R CYS 158 1_555 CB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc27 O ND1 HIS 161 R HIS 161 1_555 CB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 436 n n 
C1 C2 GOL sing 437 n n 
C1 H11 GOL sing 438 n n 
C1 H12 GOL sing 439 n n 
O1 HO1 GOL sing 440 n n 
C2 O2 GOL sing 441 n n 
C2 C3 GOL sing 442 n n 
C2 H2 GOL sing 443 n n 
O2 HO2 GOL sing 444 n n 
C3 O3 GOL sing 445 n n 
C3 H31 GOL sing 446 n n 
C3 H32 GOL sing 447 n n 
O3 HO3 GOL sing 448 n n 
#
_atom_sites.entry_id                     3H1K 
_atom_sites.fract_transf_matrix[1][1]    0.005824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004144 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 UNL A 1 3284 3284 UNL UNL . 
W 12 UNL A 1 3231 3231 UNL UNL . 
X 13 HEM C 1 501 501 HEM HEM . 
Y 13 HEM C 1 502 502 HEM HEM . 
Z 14 IKR C 1 2001 2001 IKR IKR . 
AA 15 UQ C 1 2002 2002 UQ UQ . 
BA 16 CDL C 1 2004 2004 CDL CDL . 
CA 11 PEE C 1 2007 2007 PEE PEE . 
DA 17 ZN C 1 2012 2012 ZN ZN . 
EA 18 GOL C 1 2011 2011 GOL GOL . 
FA 12 UNL C 1 4234 4234 UNL UNL . 
GA 19 HEC D 1 501 501 HEC HEC . 
HA 16 CDL D 1 2003 2003 CDL CDL . 
IA 20 BOG D 1 2009 2009 BOG BOG . 
JA 20 BOG D 1 2091 2091 BOG BOG . 
KA 21 FES E 1 501 501 FES FES . 
LA 11 PEE E 1 2005 2005 PEE PEE . 
MA 12 UNL N 1 4231 4231 UNL UNL . 
NA 13 HEM P 1 501 501 HEM HEM . 
OA 13 HEM P 1 502 502 HEM HEM . 
PA 20 BOG P 1 2010 2010 BOG BOG . 
QA 14 IKR P 1 3001 3001 IKR IKR . 
RA 15 UQ P 1 3002 3002 UQ UQ . 
SA 16 CDL P 1 3004 3004 CDL CDL . 
TA 11 PEE P 1 3007 3007 PEE PEE . 
UA 11 PEE P 1 3008 3008 PEE PEE . 
VA 17 ZN P 1 3012 3012 ZN ZN . 
WA 20 BOG P 1 3091 3091 BOG BOG . 
XA 18 GOL P 1 3011 3011 GOL GOL . 
YA 12 UNL P 1 4236 4236 UNL UNL . 
ZA 19 HEC Q 1 501 501 HEC HEC . 
AB 16 CDL Q 1 3003 3003 CDL CDL . 
BB 20 BOG Q 1 3009 3009 BOG BOG . 
CB 21 FES R 1 501 501 FES FES . 
DB 11 PEE R 1 3005 3005 PEE PEE . 
EB 22 HOH A 1 1230 1230 HOH HOH . 
FB 22 HOH C 1 381 381 HOH HOH . 
FB 22 HOH C 2 382 382 HOH HOH . 
FB 22 HOH C 3 383 383 HOH HOH . 
FB 22 HOH C 4 384 384 HOH HOH . 
FB 22 HOH C 5 385 385 HOH HOH . 
FB 22 HOH C 6 1008 1008 HOH HOH . 
FB 22 HOH C 7 1238 1238 HOH HOH . 
GB 22 HOH E 1 1289 1289 HOH HOH . 
HB 22 HOH P 1 381 381 HOH HOH . 
HB 22 HOH P 2 382 382 HOH HOH . 
HB 22 HOH P 3 383 383 HOH HOH . 
HB 22 HOH P 4 384 384 HOH HOH . 
HB 22 HOH P 5 385 385 HOH HOH . 
HB 22 HOH P 6 959 959 HOH HOH . 
HB 22 HOH P 7 1239 1239 HOH HOH . 
IB 22 HOH R 1 1240 1240 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . XA 18 35.209 150.625 98.488 1 106.61 ? C1 GOL 3011 P 1 
HETATM 2 O O1 GOL . . . XA 18 36.652 150.414 98.521 1 103.94 ? O1 GOL 3011 P 1 
HETATM 3 C C2 GOL . . . XA 18 34.581 150.988 99.867 1 108.12 ? C2 GOL 3011 P 1 
HETATM 4 O O2 GOL . . . XA 18 35.017 150.031 100.918 1 109.02 ? O2 GOL 3011 P 1 
HETATM 5 C C3 GOL . . . XA 18 33.028 151.099 99.805 1 109.51 ? C3 GOL 3011 P 1 
HETATM 6 O O3 GOL . . . XA 18 32.349 150.542 100.989 1 110.51 ? O3 GOL 3011 P 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#