data_3H1L
#
_model_server_result.job_id            u_LGhXCd5O6p7ZV8dcPPDw 
_model_server_result.datetime_utc      '2024-11-05 06:47:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EB","auth_seq_id":3009}' 
#
_entry.id    3H1L 
#
_exptl.entry_id    3H1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          18 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H1L 
_cell.length_a            174.139 
_cell.length_b            182.364 
_cell.length_c            241.626 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 IA N N 
? 18 EB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 HA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 HA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 JA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 JA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 JA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 JA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 NA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 OA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 AB FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 AB FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 BB FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 BB FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 128 n n 
C1 C2 BOG sing 129 n n 
C1 O5 BOG sing 130 n n 
C1 H1 BOG sing 131 n n 
O1 C1' BOG sing 132 n n 
C2 O2 BOG sing 133 n n 
C2 C3 BOG sing 134 n n 
C2 H2 BOG sing 135 n n 
O2 HO2 BOG sing 136 n n 
C3 O3 BOG sing 137 n n 
C3 C4 BOG sing 138 n n 
C3 H3 BOG sing 139 n n 
O3 HO3 BOG sing 140 n n 
C4 O4 BOG sing 141 n n 
C4 C5 BOG sing 142 n n 
C4 H4 BOG sing 143 n n 
O4 HO4 BOG sing 144 n n 
C5 O5 BOG sing 145 n n 
C5 C6 BOG sing 146 n n 
C5 H5 BOG sing 147 n n 
C6 O6 BOG sing 148 n n 
C6 H61 BOG sing 149 n n 
C6 H62 BOG sing 150 n n 
O6 HO6 BOG sing 151 n n 
C1' C2' BOG sing 152 n n 
C1' "H1'1" BOG sing 153 n n 
C1' "H1'2" BOG sing 154 n n 
C2' C3' BOG sing 155 n n 
C2' "H2'1" BOG sing 156 n n 
C2' "H2'2" BOG sing 157 n n 
C3' C4' BOG sing 158 n n 
C3' "H3'1" BOG sing 159 n n 
C3' "H3'2" BOG sing 160 n n 
C4' C5' BOG sing 161 n n 
C4' "H4'1" BOG sing 162 n n 
C4' "H4'2" BOG sing 163 n n 
C5' C6' BOG sing 164 n n 
C5' "H5'1" BOG sing 165 n n 
C5' "H5'2" BOG sing 166 n n 
C6' C7' BOG sing 167 n n 
C6' "H6'1" BOG sing 168 n n 
C6' "H6'2" BOG sing 169 n n 
C7' C8' BOG sing 170 n n 
C7' "H7'1" BOG sing 171 n n 
C7' "H7'2" BOG sing 172 n n 
C8' "H8'1" BOG sing 173 n n 
C8' "H8'2" BOG sing 174 n n 
C8' "H8'3" BOG sing 175 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3H1L 
_atom_sites.fract_transf_matrix[1][1]    0.005743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 PEE A 1 2008 2008 PEE PEE . 
V 12 UNL A 1 3016 3016 UNL UNL . 
W 13 HEM C 1 501 501 HEM HEM . 
X 13 HEM C 1 502 502 HEM HEM . 
Y 14 3H1 C 1 2001 2001 3H1 ACL . 
Z 14 3H1 C 1 2002 2002 3H1 ACL . 
AA 15 CDL C 1 2003 2003 CDL CDL . 
BA 11 PEE C 1 2007 2007 PEE PEE . 
CA 12 UNL C 1 2010 2010 UNL UNL . 
DA 12 UNL C 1 2104 2104 UNL UNL . 
EA 12 UNL C 1 3015 3015 UNL UNL . 
FA 12 UNL C 1 3106 3106 UNL UNL . 
GA 16 GOL C 1 2011 2011 GOL GOL . 
HA 17 HEC D 1 501 501 HEC HEC . 
IA 18 BOG D 1 2009 2009 BOG BOG . 
JA 19 FES E 1 501 501 FES FES . 
KA 11 PEE E 1 2005 2005 PEE PEE . 
LA 12 UNL E 1 2105 2105 UNL UNL . 
MA 15 CDL G 1 2004 2004 CDL CDL . 
NA 13 HEM P 1 501 501 HEM HEM . 
OA 13 HEM P 1 502 502 HEM HEM . 
PA 12 UNL P 1 2015 2015 UNL UNL . 
QA 12 UNL P 1 2106 2106 UNL UNL . 
RA 14 3H1 P 1 3001 3001 3H1 ACL . 
SA 14 3H1 P 1 3002 3002 3H1 ACL . 
TA 15 CDL P 1 3003 3003 CDL CDL . 
UA 11 PEE P 1 3007 3007 PEE PEE . 
VA 11 PEE P 1 3008 3008 PEE PEE . 
WA 12 UNL P 1 3010 3010 UNL UNL . 
XA 12 UNL P 1 3103 3103 UNL UNL . 
YA 12 UNL P 1 3104 3104 UNL UNL . 
ZA 16 GOL P 1 3011 3011 GOL GOL . 
AB 17 HEC Q 1 501 501 HEC HEC . 
BB 19 FES R 1 501 501 FES FES . 
CB 12 UNL R 1 2103 2103 UNL UNL . 
DB 11 PEE R 1 3005 3005 PEE PEE . 
EB 18 BOG R 1 3009 3009 BOG BOG . 
FB 15 CDL T 1 3004 3004 CDL CDL . 
GB 20 HOH B 1 1234 1234 HOH HOH . 
HB 20 HOH C 1 381 2 HOH HOH . 
HB 20 HOH C 2 382 108 HOH HOH . 
HB 20 HOH C 3 383 119 HOH HOH . 
HB 20 HOH C 4 384 168 HOH HOH . 
HB 20 HOH C 5 385 222 HOH HOH . 
HB 20 HOH C 6 1008 1008 HOH HOH . 
IB 20 HOH P 1 381 1 HOH HOH . 
IB 20 HOH P 2 382 28 HOH HOH . 
IB 20 HOH P 3 383 35 HOH HOH . 
IB 20 HOH P 4 384 109 HOH HOH . 
IB 20 HOH P 5 385 214 HOH HOH . 
IB 20 HOH P 6 959 959 HOH HOH . 
JB 20 HOH U 1 1233 1233 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . EB 18 26.318 137.366 115.575 1 121.33 ? C1 BOG 3009 R 1 
HETATM 2 O O1 BOG . . . EB 18 27.121 136.289 115.984 1 118.86 ? O1 BOG 3009 R 1 
HETATM 3 C C2 BOG . . . EB 18 24.788 136.959 115.56 1 122.68 ? C2 BOG 3009 R 1 
HETATM 4 O O2 BOG . . . EB 18 24.529 135.899 114.648 1 124.82 ? O2 BOG 3009 R 1 
HETATM 5 C C3 BOG . . . EB 18 23.933 138.14 115.156 1 123.47 ? C3 BOG 3009 R 1 
HETATM 6 O O3 BOG . . . EB 18 22.56 137.759 115.15 1 122.35 ? O3 BOG 3009 R 1 
HETATM 7 C C4 BOG . . . EB 18 24.2 139.301 116.145 1 123.55 ? C4 BOG 3009 R 1 
HETATM 8 O O4 BOG . . . EB 18 23.393 140.448 115.782 1 124.52 ? O4 BOG 3009 R 1 
HETATM 9 C C5 BOG . . . EB 18 25.748 139.667 116.131 1 122.64 ? C5 BOG 3009 R 1 
HETATM 10 O O5 BOG . . . EB 18 26.56 138.487 116.48 1 121.36 ? O5 BOG 3009 R 1 
HETATM 11 C C6 BOG . . . EB 18 26.109 140.782 117.123 1 122 ? C6 BOG 3009 R 1 
HETATM 12 O O6 BOG . . . EB 18 26.335 140.275 118.438 1 121.03 ? O6 BOG 3009 R 1 
HETATM 13 C C1' BOG . . . EB 18 28.24 135.881 115.161 1 115.24 ? C1' BOG 3009 R 1 
HETATM 14 C C2' BOG . . . EB 18 28.627 134.455 115.523 1 112.68 ? C2' BOG 3009 R 1 
HETATM 15 C C3' BOG . . . EB 18 30.072 134.344 115.935 1 109.88 ? C3' BOG 3009 R 1 
HETATM 16 C C4' BOG . . . EB 18 30.57 132.968 115.554 1 107.81 ? C4' BOG 3009 R 1 
HETATM 17 C C5' BOG . . . EB 18 32.03 132.975 115.131 1 106.19 ? C5' BOG 3009 R 1 
HETATM 18 C C6' BOG . . . EB 18 32.484 131.58 114.688 1 105 ? C6' BOG 3009 R 1 
HETATM 19 C C7' BOG . . . EB 18 33.994 131.531 114.544 1 104 ? C7' BOG 3009 R 1 
HETATM 20 C C8' BOG . . . EB 18 34.346 130.153 114.112 1 101.05 ? C8' BOG 3009 R 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#