data_3H1O
#
_model_server_result.job_id            krfkJSIUaKxZFvijp9usZw 
_model_server_result.datetime_utc      '2024-10-18 21:18:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":234}' 
#
_entry.id    3H1O 
#
_exptl.entry_id    3H1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H1O 
_cell.length_a            98.208 
_cell.length_b            98.208 
_cell.length_c            108.058 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 62 A PHE 62 1_555 A N1 NRQ 63 A NRQ 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.215 ? 
covale ? covale2 A C3 NRQ 63 A NRQ 63 1_555 A N SER 64 A SER 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 B C PHE 62 B PHE 62 1_555 B N1 NRQ 63 B NRQ 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
covale ? covale4 B C3 NRQ 63 B NRQ 63 1_555 B N SER 64 B SER 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     3H1O 
_atom_sites.fract_transf_matrix[1][1]    0.010182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 234 2 GOL GOL . 
D 2 GOL A 1 235 5 GOL GOL . 
E 2 GOL B 1 234 1 GOL GOL . 
F 2 GOL B 1 235 3 GOL GOL . 
G 2 GOL B 1 236 4 GOL GOL . 
H 3 HOH A 1 64 64 HOH HOH . 
H 3 HOH A 2 236 2 HOH HOH . 
H 3 HOH A 3 237 3 HOH HOH . 
H 3 HOH A 4 238 4 HOH HOH . 
H 3 HOH A 5 239 8 HOH HOH . 
H 3 HOH A 6 240 9 HOH HOH . 
H 3 HOH A 7 241 10 HOH HOH . 
H 3 HOH A 8 242 11 HOH HOH . 
H 3 HOH A 9 243 13 HOH HOH . 
H 3 HOH A 10 244 17 HOH HOH . 
H 3 HOH A 11 245 19 HOH HOH . 
H 3 HOH A 12 246 20 HOH HOH . 
H 3 HOH A 13 247 22 HOH HOH . 
H 3 HOH A 14 248 24 HOH HOH . 
H 3 HOH A 15 249 25 HOH HOH . 
H 3 HOH A 16 250 27 HOH HOH . 
H 3 HOH A 17 251 29 HOH HOH . 
H 3 HOH A 18 252 30 HOH HOH . 
H 3 HOH A 19 253 31 HOH HOH . 
H 3 HOH A 20 254 33 HOH HOH . 
H 3 HOH A 21 255 35 HOH HOH . 
H 3 HOH A 22 256 36 HOH HOH . 
H 3 HOH A 23 257 37 HOH HOH . 
H 3 HOH A 24 258 38 HOH HOH . 
H 3 HOH A 25 259 40 HOH HOH . 
H 3 HOH A 26 260 41 HOH HOH . 
H 3 HOH A 27 261 42 HOH HOH . 
H 3 HOH A 28 262 43 HOH HOH . 
H 3 HOH A 29 263 51 HOH HOH . 
H 3 HOH A 30 264 52 HOH HOH . 
H 3 HOH A 31 265 53 HOH HOH . 
H 3 HOH A 32 266 54 HOH HOH . 
H 3 HOH A 33 267 55 HOH HOH . 
H 3 HOH A 34 268 59 HOH HOH . 
H 3 HOH A 35 269 62 HOH HOH . 
H 3 HOH A 36 270 63 HOH HOH . 
H 3 HOH A 37 271 69 HOH HOH . 
H 3 HOH A 38 272 70 HOH HOH . 
H 3 HOH A 39 273 71 HOH HOH . 
H 3 HOH A 40 274 73 HOH HOH . 
H 3 HOH A 41 275 75 HOH HOH . 
H 3 HOH A 42 276 78 HOH HOH . 
H 3 HOH A 43 277 80 HOH HOH . 
H 3 HOH A 44 278 81 HOH HOH . 
H 3 HOH A 45 279 85 HOH HOH . 
H 3 HOH A 46 280 86 HOH HOH . 
H 3 HOH A 47 281 87 HOH HOH . 
H 3 HOH A 48 282 88 HOH HOH . 
H 3 HOH A 49 283 90 HOH HOH . 
H 3 HOH A 50 284 91 HOH HOH . 
H 3 HOH A 51 285 93 HOH HOH . 
H 3 HOH A 52 286 94 HOH HOH . 
H 3 HOH A 53 287 95 HOH HOH . 
H 3 HOH A 54 288 96 HOH HOH . 
H 3 HOH A 55 289 99 HOH HOH . 
H 3 HOH A 56 290 101 HOH HOH . 
H 3 HOH A 57 291 103 HOH HOH . 
H 3 HOH A 58 292 104 HOH HOH . 
H 3 HOH A 59 293 106 HOH HOH . 
H 3 HOH A 60 294 107 HOH HOH . 
H 3 HOH A 61 295 109 HOH HOH . 
H 3 HOH A 62 296 111 HOH HOH . 
H 3 HOH A 63 297 114 HOH HOH . 
H 3 HOH A 64 298 115 HOH HOH . 
H 3 HOH A 65 299 116 HOH HOH . 
H 3 HOH A 66 300 117 HOH HOH . 
H 3 HOH A 67 301 118 HOH HOH . 
H 3 HOH A 68 302 119 HOH HOH . 
H 3 HOH A 69 303 120 HOH HOH . 
H 3 HOH A 70 304 123 HOH HOH . 
H 3 HOH A 71 305 125 HOH HOH . 
H 3 HOH A 72 306 126 HOH HOH . 
H 3 HOH A 73 307 129 HOH HOH . 
H 3 HOH A 74 308 130 HOH HOH . 
H 3 HOH A 75 309 132 HOH HOH . 
H 3 HOH A 76 310 134 HOH HOH . 
H 3 HOH A 77 311 136 HOH HOH . 
H 3 HOH A 78 312 137 HOH HOH . 
H 3 HOH A 79 313 138 HOH HOH . 
H 3 HOH A 80 314 140 HOH HOH . 
H 3 HOH A 81 315 143 HOH HOH . 
H 3 HOH A 82 316 145 HOH HOH . 
H 3 HOH A 83 317 146 HOH HOH . 
H 3 HOH A 84 318 147 HOH HOH . 
H 3 HOH A 85 319 148 HOH HOH . 
H 3 HOH A 86 320 150 HOH HOH . 
H 3 HOH A 87 321 152 HOH HOH . 
H 3 HOH A 88 322 155 HOH HOH . 
H 3 HOH A 89 323 158 HOH HOH . 
H 3 HOH A 90 324 159 HOH HOH . 
H 3 HOH A 91 325 160 HOH HOH . 
H 3 HOH A 92 326 161 HOH HOH . 
H 3 HOH A 93 327 162 HOH HOH . 
H 3 HOH A 94 328 163 HOH HOH . 
H 3 HOH A 95 329 164 HOH HOH . 
H 3 HOH A 96 330 166 HOH HOH . 
H 3 HOH A 97 331 167 HOH HOH . 
H 3 HOH A 98 332 168 HOH HOH . 
H 3 HOH A 99 333 170 HOH HOH . 
H 3 HOH A 100 334 178 HOH HOH . 
H 3 HOH A 101 335 182 HOH HOH . 
H 3 HOH A 102 336 183 HOH HOH . 
H 3 HOH A 103 337 186 HOH HOH . 
H 3 HOH A 104 338 187 HOH HOH . 
H 3 HOH A 105 339 191 HOH HOH . 
H 3 HOH A 106 340 193 HOH HOH . 
H 3 HOH A 107 341 196 HOH HOH . 
H 3 HOH A 108 342 197 HOH HOH . 
H 3 HOH A 109 343 198 HOH HOH . 
H 3 HOH A 110 344 202 HOH HOH . 
H 3 HOH A 111 345 204 HOH HOH . 
H 3 HOH A 112 346 206 HOH HOH . 
H 3 HOH A 113 347 207 HOH HOH . 
H 3 HOH A 114 348 208 HOH HOH . 
H 3 HOH A 115 349 210 HOH HOH . 
H 3 HOH A 116 350 211 HOH HOH . 
H 3 HOH A 117 351 212 HOH HOH . 
H 3 HOH A 118 352 213 HOH HOH . 
H 3 HOH A 119 353 214 HOH HOH . 
H 3 HOH A 120 354 216 HOH HOH . 
H 3 HOH A 121 355 3 HOH HOH . 
H 3 HOH A 122 356 205 HOH HOH . 
I 3 HOH B 1 65 65 HOH HOH . 
I 3 HOH B 2 237 1 HOH HOH . 
I 3 HOH B 3 238 5 HOH HOH . 
I 3 HOH B 4 239 6 HOH HOH . 
I 3 HOH B 5 240 7 HOH HOH . 
I 3 HOH B 6 241 12 HOH HOH . 
I 3 HOH B 7 242 14 HOH HOH . 
I 3 HOH B 8 243 15 HOH HOH . 
I 3 HOH B 9 244 16 HOH HOH . 
I 3 HOH B 10 245 18 HOH HOH . 
I 3 HOH B 11 246 21 HOH HOH . 
I 3 HOH B 12 247 23 HOH HOH . 
I 3 HOH B 13 248 26 HOH HOH . 
I 3 HOH B 14 249 28 HOH HOH . 
I 3 HOH B 15 250 32 HOH HOH . 
I 3 HOH B 16 251 34 HOH HOH . 
I 3 HOH B 17 252 39 HOH HOH . 
I 3 HOH B 18 253 44 HOH HOH . 
I 3 HOH B 19 254 45 HOH HOH . 
I 3 HOH B 20 255 46 HOH HOH . 
I 3 HOH B 21 256 47 HOH HOH . 
I 3 HOH B 22 257 48 HOH HOH . 
I 3 HOH B 23 258 49 HOH HOH . 
I 3 HOH B 24 259 50 HOH HOH . 
I 3 HOH B 25 260 56 HOH HOH . 
I 3 HOH B 26 261 57 HOH HOH . 
I 3 HOH B 27 262 58 HOH HOH . 
I 3 HOH B 28 263 60 HOH HOH . 
I 3 HOH B 29 264 61 HOH HOH . 
I 3 HOH B 30 265 66 HOH HOH . 
I 3 HOH B 31 266 67 HOH HOH . 
I 3 HOH B 32 267 68 HOH HOH . 
I 3 HOH B 33 268 72 HOH HOH . 
I 3 HOH B 34 269 74 HOH HOH . 
I 3 HOH B 35 270 76 HOH HOH . 
I 3 HOH B 36 271 77 HOH HOH . 
I 3 HOH B 37 272 79 HOH HOH . 
I 3 HOH B 38 273 82 HOH HOH . 
I 3 HOH B 39 274 83 HOH HOH . 
I 3 HOH B 40 275 84 HOH HOH . 
I 3 HOH B 41 276 89 HOH HOH . 
I 3 HOH B 42 277 92 HOH HOH . 
I 3 HOH B 43 278 97 HOH HOH . 
I 3 HOH B 44 279 98 HOH HOH . 
I 3 HOH B 45 280 100 HOH HOH . 
I 3 HOH B 46 281 102 HOH HOH . 
I 3 HOH B 47 282 105 HOH HOH . 
I 3 HOH B 48 283 108 HOH HOH . 
I 3 HOH B 49 284 110 HOH HOH . 
I 3 HOH B 50 285 112 HOH HOH . 
I 3 HOH B 51 286 113 HOH HOH . 
I 3 HOH B 52 287 121 HOH HOH . 
I 3 HOH B 53 288 122 HOH HOH . 
I 3 HOH B 54 289 124 HOH HOH . 
I 3 HOH B 55 290 127 HOH HOH . 
I 3 HOH B 56 291 128 HOH HOH . 
I 3 HOH B 57 292 131 HOH HOH . 
I 3 HOH B 58 293 133 HOH HOH . 
I 3 HOH B 59 294 135 HOH HOH . 
I 3 HOH B 60 295 139 HOH HOH . 
I 3 HOH B 61 296 141 HOH HOH . 
I 3 HOH B 62 297 142 HOH HOH . 
I 3 HOH B 63 298 144 HOH HOH . 
I 3 HOH B 64 299 149 HOH HOH . 
I 3 HOH B 65 300 151 HOH HOH . 
I 3 HOH B 66 301 153 HOH HOH . 
I 3 HOH B 67 302 154 HOH HOH . 
I 3 HOH B 68 303 156 HOH HOH . 
I 3 HOH B 69 304 157 HOH HOH . 
I 3 HOH B 70 305 165 HOH HOH . 
I 3 HOH B 71 306 169 HOH HOH . 
I 3 HOH B 72 307 171 HOH HOH . 
I 3 HOH B 73 308 172 HOH HOH . 
I 3 HOH B 74 309 173 HOH HOH . 
I 3 HOH B 75 310 174 HOH HOH . 
I 3 HOH B 76 311 175 HOH HOH . 
I 3 HOH B 77 312 176 HOH HOH . 
I 3 HOH B 78 313 177 HOH HOH . 
I 3 HOH B 79 314 179 HOH HOH . 
I 3 HOH B 80 315 180 HOH HOH . 
I 3 HOH B 81 316 181 HOH HOH . 
I 3 HOH B 82 317 184 HOH HOH . 
I 3 HOH B 83 318 185 HOH HOH . 
I 3 HOH B 84 319 188 HOH HOH . 
I 3 HOH B 85 320 189 HOH HOH . 
I 3 HOH B 86 321 190 HOH HOH . 
I 3 HOH B 87 322 192 HOH HOH . 
I 3 HOH B 88 323 194 HOH HOH . 
I 3 HOH B 89 324 195 HOH HOH . 
I 3 HOH B 90 325 199 HOH HOH . 
I 3 HOH B 91 326 200 HOH HOH . 
I 3 HOH B 92 327 201 HOH HOH . 
I 3 HOH B 93 328 203 HOH HOH . 
I 3 HOH B 94 330 209 HOH HOH . 
I 3 HOH B 95 331 215 HOH HOH . 
I 3 HOH B 96 332 217 HOH HOH . 
I 3 HOH B 97 333 1 HOH HOH . 
I 3 HOH B 98 334 2 HOH HOH . 
I 3 HOH B 99 335 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 27.087 -13.097 -5.854 1 51.89 ? C1 GOL 234 A 1 
HETATM 2 O O1 GOL . . . C 2 26.257 -13.509 -4.796 1 43.45 ? O1 GOL 234 A 1 
HETATM 3 C C2 GOL . . . C 2 26.878 -11.601 -6.042 1 82.65 ? C2 GOL 234 A 1 
HETATM 4 O O2 GOL . . . C 2 25.993 -11.407 -7.12 1 50.58 ? O2 GOL 234 A 1 
HETATM 5 C C3 GOL . . . C 2 28.219 -10.913 -6.291 1 42.45 ? C3 GOL 234 A 1 
HETATM 6 O O3 GOL . . . C 2 28.029 -9.6 -6.768 1 35.93 ? O3 GOL 234 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#