data_3H1S # _model_server_result.job_id gtAACiknO_Em2OhkZ7QQ8A _model_server_result.datetime_utc '2025-02-05 09:58:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 3H1S # _exptl.entry_id 3H1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H1S _cell.length_a 136.787 _cell.length_b 136.787 _cell.length_c 59.765 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 30 A HIS 27 1_555 C FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A NE2 HIS 77 A HIS 74 1_555 C FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A OD2 ASP 159 A ASP 156 1_555 C FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc4 A NE2 HIS 163 A HIS 160 1_555 C FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc5 H O HOH . A HOH 236 1_555 C FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc6 B NE2 HIS 30 B HIS 27 1_555 F FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 B NE2 HIS 77 B HIS 74 1_555 F FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 B OD2 ASP 159 B ASP 156 1_555 F FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc9 B NE2 HIS 163 B HIS 160 1_555 F FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc10 I O HOH . B HOH 284 1_555 F FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3H1S _atom_sites.fract_transf_matrix[1][1] 0.007311 _atom_sites.fract_transf_matrix[1][2] 0.004221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 1001 1001 FE FE . D 3 GOL B 1 301 301 GOL GOL . E 3 GOL B 1 302 302 GOL GOL . F 2 FE B 1 1001 1001 FE FE . G 3 GOL B 1 193 301 GOL GOL . H 4 HOH A 1 193 4 HOH HOH . H 4 HOH A 2 194 17 HOH HOH . H 4 HOH A 3 195 19 HOH HOH . H 4 HOH A 4 196 22 HOH HOH . H 4 HOH A 5 197 197 HOH HOH . H 4 HOH A 6 198 27 HOH HOH . H 4 HOH A 7 199 30 HOH HOH . H 4 HOH A 8 200 33 HOH HOH . H 4 HOH A 9 201 38 HOH HOH . H 4 HOH A 10 202 41 HOH HOH . H 4 HOH A 11 203 45 HOH HOH . H 4 HOH A 12 204 47 HOH HOH . H 4 HOH A 13 205 205 HOH HOH . H 4 HOH A 14 206 49 HOH HOH . H 4 HOH A 15 207 51 HOH HOH . H 4 HOH A 16 208 54 HOH HOH . H 4 HOH A 17 209 59 HOH HOH . H 4 HOH A 18 210 60 HOH HOH . H 4 HOH A 19 211 61 HOH HOH . H 4 HOH A 20 212 212 HOH HOH . H 4 HOH A 21 213 62 HOH HOH . H 4 HOH A 22 214 64 HOH HOH . H 4 HOH A 23 215 66 HOH HOH . H 4 HOH A 24 216 68 HOH HOH . H 4 HOH A 25 217 75 HOH HOH . H 4 HOH A 26 218 76 HOH HOH . H 4 HOH A 27 219 80 HOH HOH . H 4 HOH A 28 220 83 HOH HOH . H 4 HOH A 29 221 84 HOH HOH . H 4 HOH A 30 222 85 HOH HOH . H 4 HOH A 31 223 88 HOH HOH . H 4 HOH A 32 224 224 HOH HOH . H 4 HOH A 33 225 89 HOH HOH . H 4 HOH A 34 226 226 HOH HOH . H 4 HOH A 35 227 227 HOH HOH . H 4 HOH A 36 228 93 HOH HOH . H 4 HOH A 37 229 229 HOH HOH . H 4 HOH A 38 230 230 HOH HOH . H 4 HOH A 39 231 96 HOH HOH . H 4 HOH A 40 232 97 HOH HOH . H 4 HOH A 41 233 104 HOH HOH . H 4 HOH A 42 234 234 HOH HOH . H 4 HOH A 43 235 108 HOH HOH . H 4 HOH A 44 236 110 HOH HOH . H 4 HOH A 45 237 114 HOH HOH . H 4 HOH A 46 238 238 HOH HOH . H 4 HOH A 47 239 117 HOH HOH . H 4 HOH A 48 240 118 HOH HOH . H 4 HOH A 49 241 241 HOH HOH . H 4 HOH A 50 242 242 HOH HOH . H 4 HOH A 51 243 243 HOH HOH . H 4 HOH A 52 244 121 HOH HOH . H 4 HOH A 53 245 123 HOH HOH . H 4 HOH A 54 246 134 HOH HOH . H 4 HOH A 55 247 247 HOH HOH . H 4 HOH A 56 248 248 HOH HOH . H 4 HOH A 57 249 136 HOH HOH . H 4 HOH A 58 250 139 HOH HOH . H 4 HOH A 59 251 251 HOH HOH . H 4 HOH A 60 252 252 HOH HOH . H 4 HOH A 61 253 253 HOH HOH . H 4 HOH A 62 254 151 HOH HOH . H 4 HOH A 63 255 153 HOH HOH . H 4 HOH A 64 256 159 HOH HOH . H 4 HOH A 65 257 162 HOH HOH . H 4 HOH A 66 258 258 HOH HOH . H 4 HOH A 67 259 163 HOH HOH . H 4 HOH A 68 260 164 HOH HOH . H 4 HOH A 69 261 165 HOH HOH . H 4 HOH A 70 262 168 HOH HOH . H 4 HOH A 71 263 169 HOH HOH . H 4 HOH A 72 264 170 HOH HOH . H 4 HOH A 73 265 171 HOH HOH . H 4 HOH A 74 266 174 HOH HOH . H 4 HOH A 75 267 176 HOH HOH . H 4 HOH A 76 268 177 HOH HOH . H 4 HOH A 77 269 181 HOH HOH . H 4 HOH A 78 270 183 HOH HOH . H 4 HOH A 79 271 185 HOH HOH . H 4 HOH A 80 272 187 HOH HOH . H 4 HOH A 81 273 191 HOH HOH . H 4 HOH A 82 366 193 HOH HOH . I 4 HOH B 1 194 1 HOH HOH . I 4 HOH B 2 195 2 HOH HOH . I 4 HOH B 3 196 196 HOH HOH . I 4 HOH B 4 197 3 HOH HOH . I 4 HOH B 5 198 198 HOH HOH . I 4 HOH B 6 199 199 HOH HOH . I 4 HOH B 7 200 200 HOH HOH . I 4 HOH B 8 201 201 HOH HOH . I 4 HOH B 9 202 202 HOH HOH . I 4 HOH B 10 203 203 HOH HOH . I 4 HOH B 11 204 204 HOH HOH . I 4 HOH B 12 205 5 HOH HOH . I 4 HOH B 13 206 206 HOH HOH . I 4 HOH B 14 207 207 HOH HOH . I 4 HOH B 15 208 208 HOH HOH . I 4 HOH B 16 209 7 HOH HOH . I 4 HOH B 17 210 210 HOH HOH . I 4 HOH B 18 211 211 HOH HOH . I 4 HOH B 19 212 8 HOH HOH . I 4 HOH B 20 213 213 HOH HOH . I 4 HOH B 21 214 214 HOH HOH . I 4 HOH B 22 215 215 HOH HOH . I 4 HOH B 23 216 216 HOH HOH . I 4 HOH B 24 217 217 HOH HOH . I 4 HOH B 25 218 218 HOH HOH . I 4 HOH B 26 219 219 HOH HOH . I 4 HOH B 27 220 220 HOH HOH . I 4 HOH B 28 221 221 HOH HOH . I 4 HOH B 29 222 222 HOH HOH . I 4 HOH B 30 223 223 HOH HOH . I 4 HOH B 31 224 9 HOH HOH . I 4 HOH B 32 225 225 HOH HOH . I 4 HOH B 33 226 10 HOH HOH . I 4 HOH B 34 227 11 HOH HOH . I 4 HOH B 35 228 228 HOH HOH . I 4 HOH B 36 229 12 HOH HOH . I 4 HOH B 37 230 13 HOH HOH . I 4 HOH B 38 231 231 HOH HOH . I 4 HOH B 39 232 232 HOH HOH . I 4 HOH B 40 233 233 HOH HOH . I 4 HOH B 41 234 14 HOH HOH . I 4 HOH B 42 235 235 HOH HOH . I 4 HOH B 43 236 236 HOH HOH . I 4 HOH B 44 237 237 HOH HOH . I 4 HOH B 45 238 15 HOH HOH . I 4 HOH B 46 239 239 HOH HOH . I 4 HOH B 47 240 240 HOH HOH . I 4 HOH B 48 241 16 HOH HOH . I 4 HOH B 49 242 18 HOH HOH . I 4 HOH B 50 243 20 HOH HOH . I 4 HOH B 51 244 244 HOH HOH . I 4 HOH B 52 245 245 HOH HOH . I 4 HOH B 53 246 246 HOH HOH . I 4 HOH B 54 247 21 HOH HOH . I 4 HOH B 55 248 23 HOH HOH . I 4 HOH B 56 249 249 HOH HOH . I 4 HOH B 57 250 24 HOH HOH . I 4 HOH B 58 251 25 HOH HOH . I 4 HOH B 59 252 26 HOH HOH . I 4 HOH B 60 253 28 HOH HOH . I 4 HOH B 61 254 254 HOH HOH . I 4 HOH B 62 255 255 HOH HOH . I 4 HOH B 63 256 256 HOH HOH . I 4 HOH B 64 257 257 HOH HOH . I 4 HOH B 65 258 29 HOH HOH . I 4 HOH B 66 259 259 HOH HOH . I 4 HOH B 67 260 31 HOH HOH . I 4 HOH B 68 261 261 HOH HOH . I 4 HOH B 69 262 262 HOH HOH . I 4 HOH B 70 263 263 HOH HOH . I 4 HOH B 71 264 264 HOH HOH . I 4 HOH B 72 265 32 HOH HOH . I 4 HOH B 73 266 266 HOH HOH . I 4 HOH B 74 267 267 HOH HOH . I 4 HOH B 75 268 268 HOH HOH . I 4 HOH B 76 269 269 HOH HOH . I 4 HOH B 77 270 270 HOH HOH . I 4 HOH B 78 271 34 HOH HOH . I 4 HOH B 79 272 35 HOH HOH . I 4 HOH B 80 273 37 HOH HOH . I 4 HOH B 81 274 39 HOH HOH . I 4 HOH B 82 275 40 HOH HOH . I 4 HOH B 83 276 42 HOH HOH . I 4 HOH B 84 277 43 HOH HOH . I 4 HOH B 85 278 44 HOH HOH . I 4 HOH B 86 279 46 HOH HOH . I 4 HOH B 87 280 48 HOH HOH . I 4 HOH B 88 281 50 HOH HOH . I 4 HOH B 89 282 52 HOH HOH . I 4 HOH B 90 283 53 HOH HOH . I 4 HOH B 91 284 55 HOH HOH . I 4 HOH B 92 285 56 HOH HOH . I 4 HOH B 93 286 57 HOH HOH . I 4 HOH B 94 287 58 HOH HOH . I 4 HOH B 95 288 63 HOH HOH . I 4 HOH B 96 289 65 HOH HOH . I 4 HOH B 97 290 67 HOH HOH . I 4 HOH B 98 291 69 HOH HOH . I 4 HOH B 99 292 70 HOH HOH . I 4 HOH B 100 293 72 HOH HOH . I 4 HOH B 101 294 73 HOH HOH . I 4 HOH B 102 295 74 HOH HOH . I 4 HOH B 103 296 77 HOH HOH . I 4 HOH B 104 297 78 HOH HOH . I 4 HOH B 105 298 79 HOH HOH . I 4 HOH B 106 299 82 HOH HOH . I 4 HOH B 107 300 86 HOH HOH . I 4 HOH B 108 303 87 HOH HOH . I 4 HOH B 109 304 90 HOH HOH . I 4 HOH B 110 305 91 HOH HOH . I 4 HOH B 111 306 92 HOH HOH . I 4 HOH B 112 307 94 HOH HOH . I 4 HOH B 113 308 95 HOH HOH . I 4 HOH B 114 309 98 HOH HOH . I 4 HOH B 115 310 99 HOH HOH . I 4 HOH B 116 311 100 HOH HOH . I 4 HOH B 117 312 101 HOH HOH . I 4 HOH B 118 313 102 HOH HOH . I 4 HOH B 119 314 103 HOH HOH . I 4 HOH B 120 315 105 HOH HOH . I 4 HOH B 121 316 107 HOH HOH . I 4 HOH B 122 317 109 HOH HOH . I 4 HOH B 123 318 111 HOH HOH . I 4 HOH B 124 319 112 HOH HOH . I 4 HOH B 125 320 113 HOH HOH . I 4 HOH B 126 321 115 HOH HOH . I 4 HOH B 127 322 116 HOH HOH . I 4 HOH B 128 323 119 HOH HOH . I 4 HOH B 129 324 120 HOH HOH . I 4 HOH B 130 325 122 HOH HOH . I 4 HOH B 131 326 125 HOH HOH . I 4 HOH B 132 327 127 HOH HOH . I 4 HOH B 133 328 128 HOH HOH . I 4 HOH B 134 329 129 HOH HOH . I 4 HOH B 135 330 130 HOH HOH . I 4 HOH B 136 331 131 HOH HOH . I 4 HOH B 137 332 132 HOH HOH . I 4 HOH B 138 333 133 HOH HOH . I 4 HOH B 139 334 137 HOH HOH . I 4 HOH B 140 335 138 HOH HOH . I 4 HOH B 141 336 140 HOH HOH . I 4 HOH B 142 337 141 HOH HOH . I 4 HOH B 143 338 142 HOH HOH . I 4 HOH B 144 339 143 HOH HOH . I 4 HOH B 145 340 144 HOH HOH . I 4 HOH B 146 341 145 HOH HOH . I 4 HOH B 147 342 146 HOH HOH . I 4 HOH B 148 343 147 HOH HOH . I 4 HOH B 149 344 148 HOH HOH . I 4 HOH B 150 345 149 HOH HOH . I 4 HOH B 151 346 150 HOH HOH . I 4 HOH B 152 347 152 HOH HOH . I 4 HOH B 153 348 155 HOH HOH . I 4 HOH B 154 349 156 HOH HOH . I 4 HOH B 155 350 157 HOH HOH . I 4 HOH B 156 351 158 HOH HOH . I 4 HOH B 157 352 160 HOH HOH . I 4 HOH B 158 353 166 HOH HOH . I 4 HOH B 159 354 167 HOH HOH . I 4 HOH B 160 355 172 HOH HOH . I 4 HOH B 161 356 175 HOH HOH . I 4 HOH B 162 357 178 HOH HOH . I 4 HOH B 163 358 179 HOH HOH . I 4 HOH B 164 359 180 HOH HOH . I 4 HOH B 165 360 184 HOH HOH . I 4 HOH B 166 361 186 HOH HOH . I 4 HOH B 167 362 188 HOH HOH . I 4 HOH B 168 363 189 HOH HOH . I 4 HOH B 169 364 190 HOH HOH . I 4 HOH B 170 365 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 55.025 6.226 9.133 1 45.78 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . E 3 54.481 6.276 7.804 1 46.18 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . E 3 55.452 4.763 9.474 1 47.35 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . E 3 54.522 3.843 8.969 1 49.8 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . E 3 55.758 4.294 10.905 1 46.29 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . E 3 56.5 5.209 11.71 1 44.16 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #