data_3H21 # _model_server_result.job_id oID4HsenQb2vtpmoyOYFVQ _model_server_result.datetime_utc '2024-11-29 16:40:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":278}' # _entry.id 3H21 # _exptl.entry_id 3H21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 265.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H21 _cell.length_a 97.544 _cell.length_b 97.544 _cell.length_c 263.811 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1,2 B,G,H,I,J,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -195.088 168.951164 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -146.316 84.475582 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H11 N5 O4' _chem_comp.formula_weight 265.225 _chem_comp.id B52 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-(7-amino-1-methyl-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 B52 doub 70 n n C2 N4 B52 sing 71 n n C2 N1 B52 sing 72 n n C3 N1 B52 doub 73 n n C3 N6 B52 sing 74 n n C3 N2 B52 sing 75 n n C4 C1 B52 sing 76 n n C4 O4 B52 doub 77 n n C4 N2 B52 sing 78 n n C1 C12 B52 sing 79 n n O18 C17 B52 sing 80 n n C17 O19 B52 doub 81 n n C17 C15 B52 sing 82 n n C15 C16 B52 sing 83 n n C15 C11 B52 sing 84 n n C15 H15 B52 sing 85 n n C16 H16 B52 sing 86 n n C16 H16A B52 sing 87 n n C16 H16B B52 sing 88 n n C11 C12 B52 sing 89 n n C11 N3 B52 doub 90 n n C12 O13 B52 doub 91 n n N3 N4 B52 sing 92 n n N4 C14 B52 sing 93 n n C14 H14 B52 sing 94 n n C14 H14A B52 sing 95 n n C14 H14B B52 sing 96 n n N6 HN6 B52 sing 97 n n N6 HN6A B52 sing 98 n n N2 HN2 B52 sing 99 n n O18 H11 B52 sing 100 n n # _atom_sites.entry_id 3H21 _atom_sites.fract_transf_matrix[1][1] 0.010252 _atom_sites.fract_transf_matrix[1][2] 0.005919 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B52 A 1 278 1 B52 B52 . D 3 SO4 A 1 279 2 SO4 SO4 . E 3 SO4 A 1 280 4 SO4 SO4 . F 3 SO4 A 1 281 6 SO4 SO4 . G 2 B52 B 1 278 2 B52 B52 . H 3 SO4 B 1 279 1 SO4 SO4 . I 3 SO4 B 1 280 3 SO4 SO4 . J 3 SO4 B 1 281 5 SO4 SO4 . K 4 HOH A 1 282 1 HOH HOH . K 4 HOH A 2 283 2 HOH HOH . K 4 HOH A 3 284 6 HOH HOH . K 4 HOH A 4 285 9 HOH HOH . K 4 HOH A 5 286 11 HOH HOH . K 4 HOH A 6 287 13 HOH HOH . K 4 HOH A 7 288 15 HOH HOH . K 4 HOH A 8 289 18 HOH HOH . K 4 HOH A 9 290 19 HOH HOH . K 4 HOH A 10 291 21 HOH HOH . K 4 HOH A 11 292 23 HOH HOH . K 4 HOH A 12 293 25 HOH HOH . K 4 HOH A 13 294 27 HOH HOH . K 4 HOH A 14 295 29 HOH HOH . K 4 HOH A 15 296 33 HOH HOH . K 4 HOH A 16 297 34 HOH HOH . K 4 HOH A 17 298 35 HOH HOH . K 4 HOH A 18 299 36 HOH HOH . K 4 HOH A 19 300 38 HOH HOH . K 4 HOH A 20 301 41 HOH HOH . K 4 HOH A 21 302 42 HOH HOH . K 4 HOH A 22 303 43 HOH HOH . K 4 HOH A 23 304 44 HOH HOH . K 4 HOH A 24 305 45 HOH HOH . K 4 HOH A 25 306 46 HOH HOH . K 4 HOH A 26 307 51 HOH HOH . K 4 HOH A 27 308 53 HOH HOH . K 4 HOH A 28 309 54 HOH HOH . K 4 HOH A 29 310 56 HOH HOH . K 4 HOH A 30 311 57 HOH HOH . K 4 HOH A 31 312 58 HOH HOH . K 4 HOH A 32 313 62 HOH HOH . K 4 HOH A 33 314 63 HOH HOH . K 4 HOH A 34 315 64 HOH HOH . K 4 HOH A 35 316 66 HOH HOH . K 4 HOH A 36 317 68 HOH HOH . K 4 HOH A 37 318 69 HOH HOH . K 4 HOH A 38 319 71 HOH HOH . K 4 HOH A 39 320 72 HOH HOH . K 4 HOH A 40 321 73 HOH HOH . K 4 HOH A 41 322 75 HOH HOH . K 4 HOH A 42 323 77 HOH HOH . K 4 HOH A 43 324 78 HOH HOH . K 4 HOH A 44 325 79 HOH HOH . K 4 HOH A 45 326 80 HOH HOH . K 4 HOH A 46 327 82 HOH HOH . L 4 HOH B 1 282 3 HOH HOH . L 4 HOH B 2 283 4 HOH HOH . L 4 HOH B 3 284 5 HOH HOH . L 4 HOH B 4 285 7 HOH HOH . L 4 HOH B 5 286 8 HOH HOH . L 4 HOH B 6 287 10 HOH HOH . L 4 HOH B 7 288 12 HOH HOH . L 4 HOH B 8 289 14 HOH HOH . L 4 HOH B 9 290 16 HOH HOH . L 4 HOH B 10 291 17 HOH HOH . L 4 HOH B 11 292 20 HOH HOH . L 4 HOH B 12 293 22 HOH HOH . L 4 HOH B 13 294 24 HOH HOH . L 4 HOH B 14 295 26 HOH HOH . L 4 HOH B 15 296 28 HOH HOH . L 4 HOH B 16 297 30 HOH HOH . L 4 HOH B 17 298 31 HOH HOH . L 4 HOH B 18 299 32 HOH HOH . L 4 HOH B 19 300 37 HOH HOH . L 4 HOH B 20 301 39 HOH HOH . L 4 HOH B 21 302 40 HOH HOH . L 4 HOH B 22 303 47 HOH HOH . L 4 HOH B 23 304 48 HOH HOH . L 4 HOH B 24 305 49 HOH HOH . L 4 HOH B 25 306 50 HOH HOH . L 4 HOH B 26 307 52 HOH HOH . L 4 HOH B 27 308 55 HOH HOH . L 4 HOH B 28 309 59 HOH HOH . L 4 HOH B 29 310 60 HOH HOH . L 4 HOH B 30 311 61 HOH HOH . L 4 HOH B 31 312 65 HOH HOH . L 4 HOH B 32 313 67 HOH HOH . L 4 HOH B 33 314 70 HOH HOH . L 4 HOH B 34 315 74 HOH HOH . L 4 HOH B 35 316 76 HOH HOH . L 4 HOH B 36 317 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 B52 . . . G 2 -62.949 60.138 137.363 1 49.6 ? C2 B52 278 B 1 HETATM 2 C C3 B52 . . . G 2 -64.274 60.208 139.345 1 47.55 ? C3 B52 278 B 1 HETATM 3 C C4 B52 . . . G 2 -63.256 58.151 138.831 1 46.62 ? C4 B52 278 B 1 HETATM 4 C C1 B52 . . . G 2 -62.646 58.72 137.616 1 47.5 ? C1 B52 278 B 1 HETATM 5 O O18 B52 . . . G 2 -62.326 56.663 133.634 1 56.48 ? O18 B52 278 B 1 HETATM 6 C C17 B52 . . . G 2 -61.051 56.76 133.898 1 55.53 ? C17 B52 278 B 1 HETATM 7 O O19 B52 . . . G 2 -60.274 55.759 133.753 1 55.71 ? O19 B52 278 B 1 HETATM 8 C C15 B52 . . . G 2 -60.375 58.059 134.402 1 49.17 ? C15 B52 278 B 1 HETATM 9 C C16 B52 . . . G 2 -58.945 57.75 134.826 1 54.68 ? C16 B52 278 B 1 HETATM 10 C C11 B52 . . . G 2 -61.212 58.714 135.462 1 48.87 ? C11 B52 278 B 1 HETATM 11 C C12 B52 . . . G 2 -61.769 57.984 136.657 1 48.46 ? C12 B52 278 B 1 HETATM 12 O O13 B52 . . . G 2 -61.503 56.785 136.852 1 49.49 ? O13 B52 278 B 1 HETATM 13 N N3 B52 . . . G 2 -61.545 60.024 135.328 1 48.11 ? N3 B52 278 B 1 HETATM 14 N N4 B52 . . . G 2 -62.381 60.762 136.216 1 48.34 ? N4 B52 278 B 1 HETATM 15 C C14 B52 . . . G 2 -62.696 62.187 135.947 1 47.17 ? C14 B52 278 B 1 HETATM 16 O O4 B52 . . . G 2 -63.05 56.968 139.141 1 45.27 ? O4 B52 278 B 1 HETATM 17 N N1 B52 . . . G 2 -63.746 60.804 138.26 1 49.98 ? N1 B52 278 B 1 HETATM 18 N N6 B52 . . . G 2 -65.057 60.927 140.158 1 46.21 ? N6 B52 278 B 1 HETATM 19 N N2 B52 . . . G 2 -64.036 58.926 139.593 1 47.51 ? N2 B52 278 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #