data_3H23 # _model_server_result.job_id 552Sk9LInMMZ7ydp7oSHGw _model_server_result.datetime_utc '2024-10-12 05:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":511}' # _entry.id 3H23 # _exptl.entry_id 3H23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{3-[(2-amino-5-nitroso-6-oxo-1,6-dihydropyrimidin-4-yl)amino]propoxy}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H23 _cell.length_a 96.793 _cell.length_b 96.793 _cell.length_c 263.593 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -193.586 167.650394 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -145.1895 83.825197 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C14 H15 N5 O5' _chem_comp.formula_weight 333.299 _chem_comp.id B54 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{3-[(2-amino-5-nitroso-6-oxo-1,6-dihydropyrimidin-4-yl)amino]propoxy}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 HO22 B54 sing 70 n n C21 O22 B54 sing 71 n n C21 O23 B54 doub 72 n n C18 C21 B54 sing 73 n n C19 C18 B54 doub 74 n y C19 H19 B54 sing 75 n n C20 C19 B54 sing 76 n y C20 H20 B54 sing 77 n n C17 C18 B54 sing 78 n y C17 H17 B54 sing 79 n n C16 C17 B54 doub 80 n y C16 H16 B54 sing 81 n n C15 C20 B54 doub 82 n y C15 C16 B54 sing 83 n y O14 C15 B54 sing 84 n n O14 C13 B54 sing 85 n n C13 C12 B54 sing 86 n n C13 H13 B54 sing 87 n n C13 H13A B54 sing 88 n n C12 C11 B54 sing 89 n n C12 H12 B54 sing 90 n n C12 H12A B54 sing 91 n n C11 N10 B54 sing 92 n n C11 H11 B54 sing 93 n n C11 H11A B54 sing 94 n n N10 C4 B54 sing 95 n n N10 HN10 B54 sing 96 n n C4 C5 B54 doub 97 n n C4 N1 B54 sing 98 n n C5 C2 B54 sing 99 n n N9 C5 B54 sing 100 n n O24 N9 B54 doub 101 n n C2 O8 B54 doub 102 n n C2 N2 B54 sing 103 n n C1 N2 B54 sing 104 n n C1 N7 B54 sing 105 n n N1 C1 B54 doub 106 n n N7 HN7 B54 sing 107 n n N7 HN7A B54 sing 108 n n N2 H15 B54 sing 109 n n # _atom_sites.entry_id 3H23 _atom_sites.fract_transf_matrix[1][1] 0.010331 _atom_sites.fract_transf_matrix[1][2] 0.005965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B54 A 1 511 511 B54 B54 . D 3 SO4 A 1 278 3 SO4 SO4 . E 3 SO4 A 1 279 5 SO4 SO4 . F 3 SO4 A 1 280 6 SO4 SO4 . G 3 SO4 A 1 281 7 SO4 SO4 . H 2 B54 B 1 502 502 B54 B54 . I 3 SO4 B 1 278 1 SO4 SO4 . J 3 SO4 B 1 279 2 SO4 SO4 . K 3 SO4 B 1 280 4 SO4 SO4 . L 3 SO4 B 1 281 8 SO4 SO4 . M 4 HOH A 1 282 1 HOH HOH . M 4 HOH A 2 283 2 HOH HOH . M 4 HOH A 3 284 3 HOH HOH . M 4 HOH A 4 285 4 HOH HOH . M 4 HOH A 5 286 5 HOH HOH . M 4 HOH A 6 287 6 HOH HOH . M 4 HOH A 7 288 7 HOH HOH . M 4 HOH A 8 289 8 HOH HOH . M 4 HOH A 9 290 9 HOH HOH . M 4 HOH A 10 291 10 HOH HOH . M 4 HOH A 11 292 11 HOH HOH . M 4 HOH A 12 293 12 HOH HOH . M 4 HOH A 13 294 13 HOH HOH . M 4 HOH A 14 295 14 HOH HOH . M 4 HOH A 15 296 15 HOH HOH . M 4 HOH A 16 297 16 HOH HOH . M 4 HOH A 17 298 17 HOH HOH . M 4 HOH A 18 299 18 HOH HOH . M 4 HOH A 19 300 20 HOH HOH . M 4 HOH A 20 301 21 HOH HOH . M 4 HOH A 21 302 22 HOH HOH . M 4 HOH A 22 303 23 HOH HOH . M 4 HOH A 23 304 24 HOH HOH . M 4 HOH A 24 305 25 HOH HOH . M 4 HOH A 25 306 26 HOH HOH . M 4 HOH A 26 307 27 HOH HOH . M 4 HOH A 27 308 28 HOH HOH . M 4 HOH A 28 309 29 HOH HOH . M 4 HOH A 29 310 30 HOH HOH . M 4 HOH A 30 311 31 HOH HOH . M 4 HOH A 31 312 32 HOH HOH . M 4 HOH A 32 313 33 HOH HOH . M 4 HOH A 33 314 34 HOH HOH . M 4 HOH A 34 315 35 HOH HOH . M 4 HOH A 35 316 36 HOH HOH . M 4 HOH A 36 317 37 HOH HOH . M 4 HOH A 37 318 38 HOH HOH . M 4 HOH A 38 319 39 HOH HOH . M 4 HOH A 39 320 40 HOH HOH . M 4 HOH A 40 321 41 HOH HOH . M 4 HOH A 41 322 70 HOH HOH . M 4 HOH A 42 323 71 HOH HOH . M 4 HOH A 43 324 74 HOH HOH . M 4 HOH A 44 325 75 HOH HOH . M 4 HOH A 45 326 76 HOH HOH . M 4 HOH A 46 327 78 HOH HOH . M 4 HOH A 47 328 79 HOH HOH . M 4 HOH A 48 329 80 HOH HOH . M 4 HOH A 49 330 82 HOH HOH . M 4 HOH A 50 331 86 HOH HOH . M 4 HOH A 51 332 87 HOH HOH . M 4 HOH A 52 333 91 HOH HOH . M 4 HOH A 53 334 92 HOH HOH . M 4 HOH A 54 335 94 HOH HOH . M 4 HOH A 55 336 95 HOH HOH . M 4 HOH A 56 337 97 HOH HOH . M 4 HOH A 57 338 98 HOH HOH . M 4 HOH A 58 339 99 HOH HOH . M 4 HOH A 59 340 100 HOH HOH . M 4 HOH A 60 341 101 HOH HOH . M 4 HOH A 61 342 102 HOH HOH . M 4 HOH A 62 343 103 HOH HOH . M 4 HOH A 63 344 104 HOH HOH . M 4 HOH A 64 345 105 HOH HOH . M 4 HOH A 65 346 106 HOH HOH . M 4 HOH A 66 347 107 HOH HOH . M 4 HOH A 67 348 108 HOH HOH . M 4 HOH A 68 349 109 HOH HOH . M 4 HOH A 69 350 110 HOH HOH . M 4 HOH A 70 351 111 HOH HOH . M 4 HOH A 71 352 112 HOH HOH . M 4 HOH A 72 353 124 HOH HOH . M 4 HOH A 73 354 125 HOH HOH . M 4 HOH A 74 355 126 HOH HOH . M 4 HOH A 75 356 128 HOH HOH . M 4 HOH A 76 357 130 HOH HOH . M 4 HOH A 77 358 131 HOH HOH . M 4 HOH A 78 359 132 HOH HOH . M 4 HOH A 79 360 133 HOH HOH . M 4 HOH A 80 361 134 HOH HOH . M 4 HOH A 81 362 135 HOH HOH . M 4 HOH A 82 363 142 HOH HOH . M 4 HOH A 83 364 143 HOH HOH . M 4 HOH A 84 365 144 HOH HOH . M 4 HOH A 85 366 145 HOH HOH . M 4 HOH A 86 367 146 HOH HOH . M 4 HOH A 87 368 147 HOH HOH . M 4 HOH A 88 369 148 HOH HOH . M 4 HOH A 89 370 149 HOH HOH . M 4 HOH A 90 371 150 HOH HOH . M 4 HOH A 91 372 151 HOH HOH . M 4 HOH A 92 373 152 HOH HOH . M 4 HOH A 93 374 153 HOH HOH . M 4 HOH A 94 375 154 HOH HOH . M 4 HOH A 95 376 155 HOH HOH . M 4 HOH A 96 377 156 HOH HOH . M 4 HOH A 97 378 157 HOH HOH . M 4 HOH A 98 379 158 HOH HOH . M 4 HOH A 99 380 159 HOH HOH . M 4 HOH A 100 381 160 HOH HOH . M 4 HOH A 101 382 161 HOH HOH . M 4 HOH A 102 383 162 HOH HOH . M 4 HOH A 103 384 163 HOH HOH . M 4 HOH A 104 385 164 HOH HOH . M 4 HOH A 105 386 165 HOH HOH . M 4 HOH A 106 387 166 HOH HOH . M 4 HOH A 107 388 167 HOH HOH . M 4 HOH A 108 389 168 HOH HOH . M 4 HOH A 109 390 169 HOH HOH . M 4 HOH A 110 391 170 HOH HOH . M 4 HOH A 111 392 171 HOH HOH . M 4 HOH A 112 393 172 HOH HOH . M 4 HOH A 113 394 173 HOH HOH . M 4 HOH A 114 395 176 HOH HOH . M 4 HOH A 115 396 193 HOH HOH . M 4 HOH A 116 397 197 HOH HOH . M 4 HOH A 117 398 198 HOH HOH . M 4 HOH A 118 399 200 HOH HOH . M 4 HOH A 119 400 204 HOH HOH . M 4 HOH A 120 401 205 HOH HOH . M 4 HOH A 121 402 206 HOH HOH . M 4 HOH A 122 403 207 HOH HOH . M 4 HOH A 123 404 208 HOH HOH . M 4 HOH A 124 405 209 HOH HOH . M 4 HOH A 125 406 210 HOH HOH . M 4 HOH A 126 407 215 HOH HOH . N 4 HOH B 1 282 19 HOH HOH . N 4 HOH B 2 283 42 HOH HOH . N 4 HOH B 3 284 43 HOH HOH . N 4 HOH B 4 285 44 HOH HOH . N 4 HOH B 5 286 45 HOH HOH . N 4 HOH B 6 287 46 HOH HOH . N 4 HOH B 7 288 47 HOH HOH . N 4 HOH B 8 289 48 HOH HOH . N 4 HOH B 9 290 49 HOH HOH . N 4 HOH B 10 291 50 HOH HOH . N 4 HOH B 11 292 51 HOH HOH . N 4 HOH B 12 293 52 HOH HOH . N 4 HOH B 13 294 53 HOH HOH . N 4 HOH B 14 295 54 HOH HOH . N 4 HOH B 15 296 55 HOH HOH . N 4 HOH B 16 297 56 HOH HOH . N 4 HOH B 17 298 57 HOH HOH . N 4 HOH B 18 299 58 HOH HOH . N 4 HOH B 19 300 59 HOH HOH . N 4 HOH B 20 301 60 HOH HOH . N 4 HOH B 21 302 61 HOH HOH . N 4 HOH B 22 303 62 HOH HOH . N 4 HOH B 23 304 63 HOH HOH . N 4 HOH B 24 305 64 HOH HOH . N 4 HOH B 25 306 65 HOH HOH . N 4 HOH B 26 307 66 HOH HOH . N 4 HOH B 27 308 67 HOH HOH . N 4 HOH B 28 309 68 HOH HOH . N 4 HOH B 29 310 69 HOH HOH . N 4 HOH B 30 311 72 HOH HOH . N 4 HOH B 31 312 73 HOH HOH . N 4 HOH B 32 313 77 HOH HOH . N 4 HOH B 33 314 81 HOH HOH . N 4 HOH B 34 315 83 HOH HOH . N 4 HOH B 35 316 84 HOH HOH . N 4 HOH B 36 317 85 HOH HOH . N 4 HOH B 37 318 88 HOH HOH . N 4 HOH B 38 319 89 HOH HOH . N 4 HOH B 39 320 90 HOH HOH . N 4 HOH B 40 321 93 HOH HOH . N 4 HOH B 41 322 96 HOH HOH . N 4 HOH B 42 323 113 HOH HOH . N 4 HOH B 43 324 114 HOH HOH . N 4 HOH B 44 325 115 HOH HOH . N 4 HOH B 45 326 116 HOH HOH . N 4 HOH B 46 327 117 HOH HOH . N 4 HOH B 47 328 118 HOH HOH . N 4 HOH B 48 329 119 HOH HOH . N 4 HOH B 49 330 120 HOH HOH . N 4 HOH B 50 331 121 HOH HOH . N 4 HOH B 51 332 122 HOH HOH . N 4 HOH B 52 333 123 HOH HOH . N 4 HOH B 53 334 127 HOH HOH . N 4 HOH B 54 335 129 HOH HOH . N 4 HOH B 55 336 136 HOH HOH . N 4 HOH B 56 337 137 HOH HOH . N 4 HOH B 57 338 138 HOH HOH . N 4 HOH B 58 339 139 HOH HOH . N 4 HOH B 59 340 140 HOH HOH . N 4 HOH B 60 341 141 HOH HOH . N 4 HOH B 61 342 174 HOH HOH . N 4 HOH B 62 343 175 HOH HOH . N 4 HOH B 63 344 177 HOH HOH . N 4 HOH B 64 345 178 HOH HOH . N 4 HOH B 65 346 179 HOH HOH . N 4 HOH B 66 347 180 HOH HOH . N 4 HOH B 67 348 181 HOH HOH . N 4 HOH B 68 349 182 HOH HOH . N 4 HOH B 69 350 183 HOH HOH . N 4 HOH B 70 351 184 HOH HOH . N 4 HOH B 71 352 185 HOH HOH . N 4 HOH B 72 353 186 HOH HOH . N 4 HOH B 73 354 187 HOH HOH . N 4 HOH B 74 355 188 HOH HOH . N 4 HOH B 75 356 189 HOH HOH . N 4 HOH B 76 357 190 HOH HOH . N 4 HOH B 77 358 191 HOH HOH . N 4 HOH B 78 359 192 HOH HOH . N 4 HOH B 79 360 194 HOH HOH . N 4 HOH B 80 361 195 HOH HOH . N 4 HOH B 81 362 196 HOH HOH . N 4 HOH B 82 363 199 HOH HOH . N 4 HOH B 83 364 201 HOH HOH . N 4 HOH B 84 365 202 HOH HOH . N 4 HOH B 85 366 203 HOH HOH . N 4 HOH B 86 367 211 HOH HOH . N 4 HOH B 87 368 212 HOH HOH . N 4 HOH B 88 369 213 HOH HOH . N 4 HOH B 89 370 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 B54 . . . C 2 -78.788 86.158 101.201 1 77.51 ? O22 B54 511 A 1 HETATM 2 C C21 B54 . . . C 2 -77.849 85.357 101.08 1 75.75 ? C21 B54 511 A 1 HETATM 3 O O23 B54 . . . C 2 -77.462 84.621 102.027 1 79.66 ? O23 B54 511 A 1 HETATM 4 C C18 B54 . . . C 2 -77.104 85.359 99.782 1 76.73 ? C18 B54 511 A 1 HETATM 5 C C19 B54 . . . C 2 -75.906 84.623 99.693 1 77.62 ? C19 B54 511 A 1 HETATM 6 C C20 B54 . . . C 2 -75.165 84.638 98.509 1 77.32 ? C20 B54 511 A 1 HETATM 7 C C17 B54 . . . C 2 -77.539 86.162 98.721 1 76.51 ? C17 B54 511 A 1 HETATM 8 C C16 B54 . . . C 2 -76.794 86.159 97.544 1 76.78 ? C16 B54 511 A 1 HETATM 9 C C15 B54 . . . C 2 -75.598 85.418 97.423 1 74.66 ? C15 B54 511 A 1 HETATM 10 O O14 B54 . . . C 2 -74.88 85.456 96.235 1 69.24 ? O14 B54 511 A 1 HETATM 11 C C13 B54 . . . C 2 -73.553 84.967 96.09 1 55.43 ? C13 B54 511 A 1 HETATM 12 C C12 B54 . . . C 2 -73.322 84.675 94.621 1 44.35 ? C12 B54 511 A 1 HETATM 13 C C11 B54 . . . C 2 -74.234 83.595 94.023 1 43.45 ? C11 B54 511 A 1 HETATM 14 N N10 B54 . . . C 2 -75.54 84.128 93.705 1 38.81 ? N10 B54 511 A 1 HETATM 15 C C4 B54 . . . C 2 -76.241 83.921 92.559 1 40 ? C4 B54 511 A 1 HETATM 16 C C5 B54 . . . C 2 -77.434 84.743 92.234 1 38.55 ? C5 B54 511 A 1 HETATM 17 N N9 B54 . . . C 2 -77.952 85.736 93.06 1 42.1 ? N9 B54 511 A 1 HETATM 18 O O24 B54 . . . C 2 -77.374 86.223 94.015 1 47.47 ? O24 B54 511 A 1 HETATM 19 C C2 B54 . . . C 2 -78.134 84.472 90.977 1 38.63 ? C2 B54 511 A 1 HETATM 20 O O8 B54 . . . C 2 -79.158 85.145 90.713 1 37.69 ? O8 B54 511 A 1 HETATM 21 N N2 B54 . . . C 2 -77.703 83.456 90.203 1 41.44 ? N2 B54 511 A 1 HETATM 22 C C1 B54 . . . C 2 -76.607 82.752 90.519 1 39.84 ? C1 B54 511 A 1 HETATM 23 N N1 B54 . . . C 2 -75.929 82.975 91.66 1 40.53 ? N1 B54 511 A 1 HETATM 24 N N7 B54 . . . C 2 -76.143 81.801 89.705 1 38.31 ? N7 B54 511 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #