data_3H24 # _model_server_result.job_id sJ9LBNvYWdN77cYVoDw9iQ _model_server_result.datetime_utc '2024-11-28 04:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":902}' # _entry.id 3H24 # _exptl.entry_id 3H24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H24 _cell.length_a 97.461 _cell.length_b 97.461 _cell.length_c 263.958 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,Q 1 1,2 B,I,J,K,L,M,N,O,P,R 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -194.922 168.807404 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -146.1915 84.403702 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C5 H5 N5 O S' _chem_comp.formula_weight 183.191 _chem_comp.id B55 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-amino-8-mercapto-1H-purin-6(9H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 B55 doub 70 n n C5 C2 B55 sing 71 n n C5 N4 B55 sing 72 n n C2 N1 B55 sing 73 n y C2 C3 B55 doub 74 n y N1 C1 B55 doub 75 n y N4 C4 B55 sing 76 n n C4 N3 B55 sing 77 n n C4 N2 B55 doub 78 n n N2 C3 B55 sing 79 n n C3 N5 B55 sing 80 n y N5 C1 B55 sing 81 n y C1 S1 B55 sing 82 n n N4 HN4 B55 sing 83 n n N3 HN3 B55 sing 84 n n N3 HN3A B55 sing 85 n n N5 HN5 B55 sing 86 n n S1 HS1 B55 sing 87 n n # _atom_sites.entry_id 3H24 _atom_sites.fract_transf_matrix[1][1] 0.010261 _atom_sites.fract_transf_matrix[1][2] 0.005924 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B55 A 1 901 901 B55 B55 . D 3 SO4 A 1 278 1 SO4 SO4 . E 3 SO4 A 1 279 4 SO4 SO4 . F 3 SO4 A 1 280 6 SO4 SO4 . G 3 SO4 A 1 281 7 SO4 SO4 . H 3 SO4 A 1 282 9 SO4 SO4 . I 2 B55 B 1 902 902 B55 B55 . J 3 SO4 B 1 278 2 SO4 SO4 . K 3 SO4 B 1 279 3 SO4 SO4 . L 3 SO4 B 1 280 5 SO4 SO4 . M 3 SO4 B 1 281 8 SO4 SO4 . N 3 SO4 B 1 282 10 SO4 SO4 . O 3 SO4 B 1 283 11 SO4 SO4 . P 3 SO4 B 1 284 12 SO4 SO4 . Q 4 HOH A 1 283 2 HOH HOH . Q 4 HOH A 2 284 3 HOH HOH . Q 4 HOH A 3 285 4 HOH HOH . Q 4 HOH A 4 286 5 HOH HOH . Q 4 HOH A 5 287 6 HOH HOH . Q 4 HOH A 6 288 7 HOH HOH . Q 4 HOH A 7 289 8 HOH HOH . Q 4 HOH A 8 290 9 HOH HOH . Q 4 HOH A 9 291 10 HOH HOH . Q 4 HOH A 10 292 15 HOH HOH . Q 4 HOH A 11 293 16 HOH HOH . Q 4 HOH A 12 294 19 HOH HOH . Q 4 HOH A 13 295 20 HOH HOH . Q 4 HOH A 14 296 21 HOH HOH . Q 4 HOH A 15 297 22 HOH HOH . Q 4 HOH A 16 298 23 HOH HOH . Q 4 HOH A 17 299 24 HOH HOH . Q 4 HOH A 18 300 25 HOH HOH . Q 4 HOH A 19 301 26 HOH HOH . Q 4 HOH A 20 302 27 HOH HOH . Q 4 HOH A 21 303 28 HOH HOH . Q 4 HOH A 22 304 30 HOH HOH . Q 4 HOH A 23 305 31 HOH HOH . Q 4 HOH A 24 306 32 HOH HOH . Q 4 HOH A 25 307 33 HOH HOH . Q 4 HOH A 26 308 41 HOH HOH . Q 4 HOH A 27 309 42 HOH HOH . Q 4 HOH A 28 310 43 HOH HOH . Q 4 HOH A 29 311 44 HOH HOH . Q 4 HOH A 30 312 45 HOH HOH . Q 4 HOH A 31 313 46 HOH HOH . Q 4 HOH A 32 314 47 HOH HOH . Q 4 HOH A 33 315 48 HOH HOH . Q 4 HOH A 34 316 49 HOH HOH . Q 4 HOH A 35 317 50 HOH HOH . Q 4 HOH A 36 318 51 HOH HOH . Q 4 HOH A 37 319 52 HOH HOH . Q 4 HOH A 38 320 53 HOH HOH . Q 4 HOH A 39 321 54 HOH HOH . Q 4 HOH A 40 322 55 HOH HOH . Q 4 HOH A 41 323 62 HOH HOH . Q 4 HOH A 42 324 63 HOH HOH . R 4 HOH B 1 285 1 HOH HOH . R 4 HOH B 2 286 11 HOH HOH . R 4 HOH B 3 287 12 HOH HOH . R 4 HOH B 4 288 13 HOH HOH . R 4 HOH B 5 289 14 HOH HOH . R 4 HOH B 6 290 17 HOH HOH . R 4 HOH B 7 291 18 HOH HOH . R 4 HOH B 8 292 29 HOH HOH . R 4 HOH B 9 293 34 HOH HOH . R 4 HOH B 10 294 35 HOH HOH . R 4 HOH B 11 295 36 HOH HOH . R 4 HOH B 12 296 37 HOH HOH . R 4 HOH B 13 297 38 HOH HOH . R 4 HOH B 14 298 39 HOH HOH . R 4 HOH B 15 299 40 HOH HOH . R 4 HOH B 16 300 56 HOH HOH . R 4 HOH B 17 301 57 HOH HOH . R 4 HOH B 18 302 58 HOH HOH . R 4 HOH B 19 303 59 HOH HOH . R 4 HOH B 20 304 60 HOH HOH . R 4 HOH B 21 305 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B55 . . . I 2 -62.869 56.908 139.303 1 84.26 ? O1 B55 902 B 1 HETATM 2 C C5 B55 . . . I 2 -63.153 58.223 139.155 1 84.33 ? C5 B55 902 B 1 HETATM 3 C C2 B55 . . . I 2 -62.57 58.868 138.122 1 84.85 ? C2 B55 902 B 1 HETATM 4 N N1 B55 . . . I 2 -61.74 58.42 137.184 1 85.49 ? N1 B55 902 B 1 HETATM 5 N N4 B55 . . . I 2 -63.979 58.935 139.947 1 85.67 ? N4 B55 902 B 1 HETATM 6 C C4 B55 . . . I 2 -64.221 60.264 139.764 1 85.32 ? C4 B55 902 B 1 HETATM 7 N N3 B55 . . . I 2 -65.041 60.924 140.611 1 84.59 ? N3 B55 902 B 1 HETATM 8 N N2 B55 . . . I 2 -63.646 60.934 138.745 1 85.5 ? N2 B55 902 B 1 HETATM 9 C C3 B55 . . . I 2 -62.83 60.224 137.931 1 85.05 ? C3 B55 902 B 1 HETATM 10 N N5 B55 . . . I 2 -62.164 60.684 136.862 1 84.8 ? N5 B55 902 B 1 HETATM 11 C C1 B55 . . . I 2 -61.559 59.541 136.491 1 85.22 ? C1 B55 902 B 1 HETATM 12 S S1 B55 . . . I 2 -60.493 59.445 135.12 1 88.15 ? S1 B55 902 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #