data_3H2A
#
_model_server_result.job_id            KiR1tG4B-bnAp5xmu-y8_g 
_model_server_result.datetime_utc      '2024-11-28 04:18:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":902}' 
#
_entry.id    3H2A 
#
_exptl.entry_id    3H2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              171.114 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,6-diamino-5-nitropyrimidin-4(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3H2A 
_cell.length_a            97.513 
_cell.length_b            97.513 
_cell.length_c            261.643 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,L 1 1,2 
B,G,H,I,J,K,M 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -195.026 168.89747 0 
3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -146.2695 84.448735 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C4 H5 N5 O3' 
_chem_comp.formula_weight    171.114 
_chem_comp.id                B57 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,6-diamino-5-nitropyrimidin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7 C1 B57 doub 70 n n 
C1 C6 B57 sing 71 n n 
C1 N2 B57 sing 72 n n 
C6 N8 B57 sing 73 n n 
C6 C5 B57 doub 74 n n 
N8 O10 B57 sing 75 n n 
N8 O9 B57 doub 76 n n 
N2 C3 B57 sing 77 n n 
N2 HN2 B57 sing 78 n n 
C3 N11 B57 sing 79 n n 
C3 N4 B57 doub 80 n n 
N11 HN11 B57 sing 81 n n 
N11 HN1A B57 sing 82 n n 
N4 C5 B57 sing 83 n n 
C5 N12 B57 sing 84 n n 
N12 HN12 B57 sing 85 n n 
N12 HN1B B57 sing 86 n n 
#
_atom_sites.entry_id                     3H2A 
_atom_sites.fract_transf_matrix[1][1]    0.010255 
_atom_sites.fract_transf_matrix[1][2]    0.005921 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B57 A 1 901 901 B57 B57 . 
D 3 SO4 A 1 278 1 SO4 SO4 . 
E 3 SO4 A 1 279 2 SO4 SO4 . 
F 3 SO4 A 1 280 3 SO4 SO4 . 
G 2 B57 B 1 902 902 B57 B57 . 
H 3 SO4 B 1 278 4 SO4 SO4 . 
I 3 SO4 B 1 279 5 SO4 SO4 . 
J 3 SO4 B 1 280 6 SO4 SO4 . 
K 3 SO4 B 1 281 7 SO4 SO4 . 
L 4 HOH A 1 281 1 HOH HOH . 
L 4 HOH A 2 282 2 HOH HOH . 
L 4 HOH A 3 283 3 HOH HOH . 
L 4 HOH A 4 284 4 HOH HOH . 
L 4 HOH A 5 285 5 HOH HOH . 
L 4 HOH A 6 286 6 HOH HOH . 
L 4 HOH A 7 287 7 HOH HOH . 
L 4 HOH A 8 288 8 HOH HOH . 
L 4 HOH A 9 289 9 HOH HOH . 
L 4 HOH A 10 290 10 HOH HOH . 
L 4 HOH A 11 291 11 HOH HOH . 
L 4 HOH A 12 292 12 HOH HOH . 
L 4 HOH A 13 293 13 HOH HOH . 
L 4 HOH A 14 294 14 HOH HOH . 
L 4 HOH A 15 295 15 HOH HOH . 
L 4 HOH A 16 296 16 HOH HOH . 
L 4 HOH A 17 297 17 HOH HOH . 
L 4 HOH A 18 298 18 HOH HOH . 
L 4 HOH A 19 299 19 HOH HOH . 
L 4 HOH A 20 300 20 HOH HOH . 
L 4 HOH A 21 301 21 HOH HOH . 
L 4 HOH A 22 302 22 HOH HOH . 
L 4 HOH A 23 303 23 HOH HOH . 
L 4 HOH A 24 304 24 HOH HOH . 
L 4 HOH A 25 305 25 HOH HOH . 
L 4 HOH A 26 306 26 HOH HOH . 
L 4 HOH A 27 307 49 HOH HOH . 
L 4 HOH A 28 308 50 HOH HOH . 
L 4 HOH A 29 309 52 HOH HOH . 
L 4 HOH A 30 310 54 HOH HOH . 
L 4 HOH A 31 311 55 HOH HOH . 
L 4 HOH A 32 312 58 HOH HOH . 
L 4 HOH A 33 313 59 HOH HOH . 
L 4 HOH A 34 314 60 HOH HOH . 
L 4 HOH A 35 315 61 HOH HOH . 
L 4 HOH A 36 316 62 HOH HOH . 
L 4 HOH A 37 317 63 HOH HOH . 
L 4 HOH A 38 318 64 HOH HOH . 
L 4 HOH A 39 319 65 HOH HOH . 
L 4 HOH A 40 320 66 HOH HOH . 
L 4 HOH A 41 321 76 HOH HOH . 
L 4 HOH A 42 322 77 HOH HOH . 
L 4 HOH A 43 323 78 HOH HOH . 
L 4 HOH A 44 324 80 HOH HOH . 
L 4 HOH A 45 326 82 HOH HOH . 
L 4 HOH A 46 327 83 HOH HOH . 
L 4 HOH A 47 328 84 HOH HOH . 
L 4 HOH A 48 329 85 HOH HOH . 
L 4 HOH A 49 330 86 HOH HOH . 
L 4 HOH A 50 331 89 HOH HOH . 
L 4 HOH A 51 332 90 HOH HOH . 
L 4 HOH A 52 333 91 HOH HOH . 
L 4 HOH A 53 334 92 HOH HOH . 
L 4 HOH A 54 335 95 HOH HOH . 
L 4 HOH A 55 336 96 HOH HOH . 
L 4 HOH A 56 337 97 HOH HOH . 
L 4 HOH A 57 338 98 HOH HOH . 
L 4 HOH A 58 339 99 HOH HOH . 
L 4 HOH A 59 340 100 HOH HOH . 
L 4 HOH A 60 341 101 HOH HOH . 
L 4 HOH A 61 342 102 HOH HOH . 
L 4 HOH A 62 343 103 HOH HOH . 
M 4 HOH B 1 282 27 HOH HOH . 
M 4 HOH B 2 283 28 HOH HOH . 
M 4 HOH B 3 284 29 HOH HOH . 
M 4 HOH B 4 285 30 HOH HOH . 
M 4 HOH B 5 286 31 HOH HOH . 
M 4 HOH B 6 287 32 HOH HOH . 
M 4 HOH B 7 288 33 HOH HOH . 
M 4 HOH B 8 289 34 HOH HOH . 
M 4 HOH B 9 290 35 HOH HOH . 
M 4 HOH B 10 291 36 HOH HOH . 
M 4 HOH B 11 292 37 HOH HOH . 
M 4 HOH B 12 293 38 HOH HOH . 
M 4 HOH B 13 294 39 HOH HOH . 
M 4 HOH B 14 295 40 HOH HOH . 
M 4 HOH B 15 296 41 HOH HOH . 
M 4 HOH B 16 297 42 HOH HOH . 
M 4 HOH B 17 298 43 HOH HOH . 
M 4 HOH B 18 299 44 HOH HOH . 
M 4 HOH B 19 300 45 HOH HOH . 
M 4 HOH B 20 301 46 HOH HOH . 
M 4 HOH B 21 302 47 HOH HOH . 
M 4 HOH B 22 303 48 HOH HOH . 
M 4 HOH B 23 304 51 HOH HOH . 
M 4 HOH B 24 305 53 HOH HOH . 
M 4 HOH B 25 306 56 HOH HOH . 
M 4 HOH B 26 307 57 HOH HOH . 
M 4 HOH B 27 308 67 HOH HOH . 
M 4 HOH B 28 309 68 HOH HOH . 
M 4 HOH B 29 310 69 HOH HOH . 
M 4 HOH B 30 311 70 HOH HOH . 
M 4 HOH B 31 312 71 HOH HOH . 
M 4 HOH B 32 313 72 HOH HOH . 
M 4 HOH B 33 314 73 HOH HOH . 
M 4 HOH B 34 315 74 HOH HOH . 
M 4 HOH B 35 316 75 HOH HOH . 
M 4 HOH B 36 317 79 HOH HOH . 
M 4 HOH B 37 318 87 HOH HOH . 
M 4 HOH B 38 319 88 HOH HOH . 
M 4 HOH B 39 320 93 HOH HOH . 
M 4 HOH B 40 321 94 HOH HOH . 
M 4 HOH B 41 322 104 HOH HOH . 
M 4 HOH B 42 323 105 HOH HOH . 
M 4 HOH B 43 325 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O7 B57 . . . G 2 -63.301 57.171 137.804 1 54.29 ? O7 B57 902 B 1 
HETATM 2 C C1 B57 . . . G 2 -63.464 58.396 137.617 1 54.91 ? C1 B57 902 B 1 
HETATM 3 C C6 B57 . . . G 2 -62.859 59.148 136.49 1 56.73 ? C6 B57 902 B 1 
HETATM 4 N N8 B57 . . . G 2 -62.073 58.553 135.557 1 58.12 ? N8 B57 902 B 1 
HETATM 5 O O10 B57 . . . G 2 -61.591 59.222 134.645 1 58.48 ? O10 B57 902 B 1 
HETATM 6 O O9 B57 . . . G 2 -61.838 57.347 135.608 1 58.85 ? O9 B57 902 B 1 
HETATM 7 N N2 B57 . . . G 2 -64.234 59.085 138.472 1 56.52 ? N2 B57 902 B 1 
HETATM 8 C C3 B57 . . . G 2 -64.471 60.412 138.373 1 56.36 ? C3 B57 902 B 1 
HETATM 9 N N11 B57 . . . G 2 -65.254 60.994 139.309 1 55.32 ? N11 B57 902 B 1 
HETATM 10 N N4 B57 . . . G 2 -63.948 61.157 137.369 1 57.29 ? N4 B57 902 B 1 
HETATM 11 C C5 B57 . . . G 2 -63.157 60.604 136.417 1 57.7 ? C5 B57 902 B 1 
HETATM 12 N N12 B57 . . . G 2 -62.648 61.382 135.42 1 57.29 ? N12 B57 902 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#