data_3H2M # _model_server_result.job_id 9IfZAB1eJeRgGutOavDTug _model_server_result.datetime_utc '2024-11-28 01:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 3H2M # _exptl.entry_id 3H2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.285 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-6-(2-hydroxy-2-methylpropyl)-8-methyl-7,8-dihydropteridin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H2M _cell.length_a 99.155 _cell.length_b 99.155 _cell.length_c 262.077 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1,2 B,H,I,J,K,L,M,N,P 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -198.31 171.741498 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -148.7325 85.870749 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C11 H17 N5 O2' _chem_comp.formula_weight 251.285 _chem_comp.id B61 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-6-(2-hydroxy-2-methylpropyl)-8-methyl-7,8-dihydropteridin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 B61 doub 70 n n C1 N3 B61 sing 71 n n C4 C1 B61 sing 72 n n C7 C4 B61 doub 73 n n C7 N6 B61 sing 74 n n N6 C5 B61 doub 75 n n C5 N3 B61 sing 76 n n C5 N8 B61 sing 77 n n N8 HN8 B61 sing 78 n n N8 HN8A B61 sing 79 n n N9 C4 B61 sing 80 n n C10 N9 B61 doub 81 n n C17 C10 B61 sing 82 n n C17 H17 B61 sing 83 n n C17 H17A B61 sing 84 n n C23 C17 B61 sing 85 n n O24 C23 B61 sing 86 n n O24 HO24 B61 sing 87 n n C25 C23 B61 sing 88 n n C25 H25 B61 sing 89 n n C25 H25A B61 sing 90 n n C25 H25B B61 sing 91 n n C26 C23 B61 sing 92 n n C26 H26 B61 sing 93 n n C26 H26A B61 sing 94 n n C26 H26B B61 sing 95 n n C11 C10 B61 sing 96 n n C11 N12 B61 sing 97 n n C11 H11 B61 sing 98 n n N12 C7 B61 sing 99 n n C13 N12 B61 sing 100 n n C13 H13 B61 sing 101 n n C13 H13A B61 sing 102 n n C13 H13B B61 sing 103 n n N3 H16 B61 sing 104 n n C11 H171 B61 sing 105 n n # _atom_sites.entry_id 3H2M _atom_sites.fract_transf_matrix[1][1] 0.010085 _atom_sites.fract_transf_matrix[1][2] 0.005823 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B61 A 1 901 901 B61 B61 . D 3 SO4 A 1 278 1 SO4 SO4 . E 3 SO4 A 1 279 6 SO4 SO4 . F 3 SO4 A 1 280 7 SO4 SO4 . G 3 SO4 A 1 281 8 SO4 SO4 . H 2 B61 B 1 902 902 B61 B61 . I 3 SO4 B 1 278 2 SO4 SO4 . J 3 SO4 B 1 279 3 SO4 SO4 . K 3 SO4 B 1 280 4 SO4 SO4 . L 3 SO4 B 1 281 5 SO4 SO4 . M 3 SO4 B 1 282 9 SO4 SO4 . N 3 SO4 B 1 283 10 SO4 SO4 . O 4 HOH A 1 282 1 HOH HOH . O 4 HOH A 2 283 2 HOH HOH . O 4 HOH A 3 284 3 HOH HOH . O 4 HOH A 4 285 4 HOH HOH . O 4 HOH A 5 286 5 HOH HOH . O 4 HOH A 6 287 6 HOH HOH . O 4 HOH A 7 288 7 HOH HOH . O 4 HOH A 8 289 8 HOH HOH . O 4 HOH A 9 290 9 HOH HOH . O 4 HOH A 10 291 10 HOH HOH . O 4 HOH A 11 292 11 HOH HOH . O 4 HOH A 12 293 12 HOH HOH . O 4 HOH A 13 294 13 HOH HOH . O 4 HOH A 14 295 14 HOH HOH . O 4 HOH A 15 296 15 HOH HOH . O 4 HOH A 16 297 16 HOH HOH . O 4 HOH A 17 298 17 HOH HOH . O 4 HOH A 18 299 18 HOH HOH . O 4 HOH A 19 300 19 HOH HOH . O 4 HOH A 20 301 20 HOH HOH . O 4 HOH A 21 302 21 HOH HOH . O 4 HOH A 22 303 22 HOH HOH . O 4 HOH A 23 304 23 HOH HOH . O 4 HOH A 24 305 24 HOH HOH . O 4 HOH A 25 306 25 HOH HOH . O 4 HOH A 26 307 26 HOH HOH . O 4 HOH A 27 308 27 HOH HOH . O 4 HOH A 28 309 28 HOH HOH . O 4 HOH A 29 310 29 HOH HOH . O 4 HOH A 30 311 30 HOH HOH . O 4 HOH A 31 312 31 HOH HOH . O 4 HOH A 32 313 32 HOH HOH . O 4 HOH A 33 314 33 HOH HOH . O 4 HOH A 34 315 34 HOH HOH . O 4 HOH A 35 316 35 HOH HOH . O 4 HOH A 36 317 36 HOH HOH . O 4 HOH A 37 318 37 HOH HOH . O 4 HOH A 38 319 38 HOH HOH . O 4 HOH A 39 320 39 HOH HOH . O 4 HOH A 40 321 40 HOH HOH . O 4 HOH A 41 322 41 HOH HOH . O 4 HOH A 42 323 85 HOH HOH . O 4 HOH A 43 324 86 HOH HOH . O 4 HOH A 44 325 89 HOH HOH . O 4 HOH A 45 326 90 HOH HOH . O 4 HOH A 46 327 91 HOH HOH . O 4 HOH A 47 328 92 HOH HOH . O 4 HOH A 48 329 93 HOH HOH . O 4 HOH A 49 330 94 HOH HOH . O 4 HOH A 50 331 88 HOH HOH . O 4 HOH A 51 333 97 HOH HOH . O 4 HOH A 52 335 99 HOH HOH . O 4 HOH A 53 336 100 HOH HOH . O 4 HOH A 54 337 101 HOH HOH . O 4 HOH A 55 338 102 HOH HOH . O 4 HOH A 56 339 103 HOH HOH . O 4 HOH A 57 340 110 HOH HOH . O 4 HOH A 58 341 111 HOH HOH . O 4 HOH A 59 342 112 HOH HOH . O 4 HOH A 60 343 113 HOH HOH . O 4 HOH A 61 344 114 HOH HOH . O 4 HOH A 62 345 115 HOH HOH . O 4 HOH A 63 347 117 HOH HOH . O 4 HOH A 64 348 120 HOH HOH . O 4 HOH A 65 349 121 HOH HOH . O 4 HOH A 66 351 124 HOH HOH . O 4 HOH A 67 352 125 HOH HOH . O 4 HOH A 68 353 126 HOH HOH . O 4 HOH A 69 354 127 HOH HOH . O 4 HOH A 70 355 128 HOH HOH . O 4 HOH A 71 356 129 HOH HOH . O 4 HOH A 72 357 130 HOH HOH . O 4 HOH A 73 358 131 HOH HOH . O 4 HOH A 74 359 132 HOH HOH . O 4 HOH A 75 360 133 HOH HOH . O 4 HOH A 76 361 144 HOH HOH . O 4 HOH A 77 362 145 HOH HOH . P 4 HOH B 1 284 42 HOH HOH . P 4 HOH B 2 285 43 HOH HOH . P 4 HOH B 3 286 44 HOH HOH . P 4 HOH B 4 287 45 HOH HOH . P 4 HOH B 5 288 46 HOH HOH . P 4 HOH B 6 289 47 HOH HOH . P 4 HOH B 7 290 48 HOH HOH . P 4 HOH B 8 291 49 HOH HOH . P 4 HOH B 9 292 50 HOH HOH . P 4 HOH B 10 293 51 HOH HOH . P 4 HOH B 11 294 52 HOH HOH . P 4 HOH B 12 295 53 HOH HOH . P 4 HOH B 13 296 54 HOH HOH . P 4 HOH B 14 297 55 HOH HOH . P 4 HOH B 15 298 56 HOH HOH . P 4 HOH B 16 299 57 HOH HOH . P 4 HOH B 17 300 58 HOH HOH . P 4 HOH B 18 301 59 HOH HOH . P 4 HOH B 19 302 60 HOH HOH . P 4 HOH B 20 303 61 HOH HOH . P 4 HOH B 21 304 62 HOH HOH . P 4 HOH B 22 305 63 HOH HOH . P 4 HOH B 23 306 64 HOH HOH . P 4 HOH B 24 307 65 HOH HOH . P 4 HOH B 25 308 66 HOH HOH . P 4 HOH B 26 309 67 HOH HOH . P 4 HOH B 27 310 68 HOH HOH . P 4 HOH B 28 311 69 HOH HOH . P 4 HOH B 29 312 70 HOH HOH . P 4 HOH B 30 313 71 HOH HOH . P 4 HOH B 31 314 72 HOH HOH . P 4 HOH B 32 315 73 HOH HOH . P 4 HOH B 33 316 74 HOH HOH . P 4 HOH B 34 317 75 HOH HOH . P 4 HOH B 35 318 76 HOH HOH . P 4 HOH B 36 319 77 HOH HOH . P 4 HOH B 37 320 78 HOH HOH . P 4 HOH B 38 321 79 HOH HOH . P 4 HOH B 39 322 80 HOH HOH . P 4 HOH B 40 323 81 HOH HOH . P 4 HOH B 41 324 82 HOH HOH . P 4 HOH B 42 325 83 HOH HOH . P 4 HOH B 43 326 84 HOH HOH . P 4 HOH B 44 327 87 HOH HOH . P 4 HOH B 45 329 104 HOH HOH . P 4 HOH B 46 330 105 HOH HOH . P 4 HOH B 47 331 95 HOH HOH . P 4 HOH B 48 332 96 HOH HOH . P 4 HOH B 49 333 108 HOH HOH . P 4 HOH B 50 334 98 HOH HOH . P 4 HOH B 51 335 118 HOH HOH . P 4 HOH B 52 336 119 HOH HOH . P 4 HOH B 53 337 123 HOH HOH . P 4 HOH B 54 338 134 HOH HOH . P 4 HOH B 55 339 135 HOH HOH . P 4 HOH B 56 340 136 HOH HOH . P 4 HOH B 57 341 137 HOH HOH . P 4 HOH B 58 342 138 HOH HOH . P 4 HOH B 59 343 139 HOH HOH . P 4 HOH B 60 344 140 HOH HOH . P 4 HOH B 61 345 141 HOH HOH . P 4 HOH B 62 346 116 HOH HOH . P 4 HOH B 63 347 143 HOH HOH . P 4 HOH B 64 348 146 HOH HOH . P 4 HOH B 65 349 147 HOH HOH . P 4 HOH B 66 350 122 HOH HOH . P 4 HOH B 67 351 106 HOH HOH . P 4 HOH B 68 352 107 HOH HOH . P 4 HOH B 69 353 109 HOH HOH . P 4 HOH B 70 354 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 B61 . . . H 2 -64.616 57.765 138.437 1 48.62 ? O2 B61 902 B 1 HETATM 2 C C1 B61 . . . H 2 -64.792 58.957 138.113 1 48.19 ? C1 B61 902 B 1 HETATM 3 C C4 B61 . . . H 2 -64.075 59.508 136.937 1 48.6 ? C4 B61 902 B 1 HETATM 4 C C7 B61 . . . H 2 -64.291 60.924 136.604 1 48.8 ? C7 B61 902 B 1 HETATM 5 N N6 B61 . . . H 2 -65.132 61.631 137.406 1 50.19 ? N6 B61 902 B 1 HETATM 6 C C5 B61 . . . H 2 -65.774 61.08 138.487 1 49.18 ? C5 B61 902 B 1 HETATM 7 N N8 B61 . . . H 2 -66.575 61.827 139.266 1 47.71 ? N8 B61 902 B 1 HETATM 8 N N3 B61 . . . H 2 -65.619 59.78 138.8 1 49.85 ? N3 B61 902 B 1 HETATM 9 N N9 B61 . . . H 2 -63.257 58.766 136.172 1 50.26 ? N9 B61 902 B 1 HETATM 10 C C10 B61 . . . H 2 -62.603 59.243 135.076 1 50.73 ? C10 B61 902 B 1 HETATM 11 C C17 B61 . . . H 2 -61.73 58.133 134.487 1 52.47 ? C17 B61 902 B 1 HETATM 12 C C23 B61 . . . H 2 -61.675 57.803 132.996 1 65.05 ? C23 B61 902 B 1 HETATM 13 O O24 B61 . . . H 2 -63.069 57.577 132.532 1 63.23 ? O24 B61 902 B 1 HETATM 14 C C25 B61 . . . H 2 -61 59.039 132.338 1 65.55 ? C25 B61 902 B 1 HETATM 15 C C26 B61 . . . H 2 -60.826 56.505 132.749 1 65.5 ? C26 B61 902 B 1 HETATM 16 C C11 B61 . . . H 2 -62.697 60.712 134.6 1 48.16 ? C11 B61 902 B 1 HETATM 17 N N12 B61 . . . H 2 -63.627 61.474 135.482 1 50.35 ? N12 B61 902 B 1 HETATM 18 C C13 B61 . . . H 2 -63.913 62.877 135.256 1 50.11 ? C13 B61 902 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 18 #