data_3H2W # _model_server_result.job_id VmG51bfjrr-ThgAr6kScvg _model_server_result.datetime_utc '2024-11-25 22:41:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":539}' # _entry.id 3H2W # _exptl.entry_id 3H2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H2W _cell.length_a 84.892 _cell.length_b 129.398 _cell.length_c 48.965 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC X 602 GLC 2 n B BGC 2 B 2 BGC X 601 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? metalc ? metalc1 A SG CYS 104 A CYS 104 1_555 E ZN ZN . A ZN 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A SG CYS 121 A CYS 121 1_555 E ZN ZN . A ZN 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A ND1 HIS 122 A HIS 122 1_555 E ZN ZN . A ZN 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc4 A NE2 HIS 142 A HIS 142 1_555 E ZN ZN . A ZN 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OD2 ASP 302 A ASP 302 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 A O GLU 304 A GLU 304 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A OD1 ASP 307 A ASP 307 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 A OD2 ASP 307 A ASP 307 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc9 A OE1 GLU 308 A GLU 308 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc10 A OE2 GLU 308 A GLU 308 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 A O ALA 344 A ALA 344 1_555 D CA CA . A CA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc12 A O SER 465 A SER 465 1_555 F CO CO . A CO 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 A OD1 ASP 468 A ASP 468 1_555 F CO CO . A CO 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc14 A O VAL 470 A VAL 470 1_555 F CO CO . A CO 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H2W _atom_sites.fract_transf_matrix[1][1] 0.01178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BGC A 1 603 603 BGC GLC . D 4 CA A 1 538 1 CA CA . E 5 ZN A 1 539 1 ZN ZN . F 6 CO A 1 540 1 CO CO . G 6 CO A 1 541 2 CO CO . H 7 HOH A 1 542 1 HOH HOH . H 7 HOH A 2 543 2 HOH HOH . H 7 HOH A 3 544 4 HOH HOH . H 7 HOH A 4 545 5 HOH HOH . H 7 HOH A 5 546 6 HOH HOH . H 7 HOH A 6 547 7 HOH HOH . H 7 HOH A 7 548 8 HOH HOH . H 7 HOH A 8 549 9 HOH HOH . H 7 HOH A 9 550 10 HOH HOH . H 7 HOH A 10 551 11 HOH HOH . H 7 HOH A 11 552 12 HOH HOH . H 7 HOH A 12 553 13 HOH HOH . H 7 HOH A 13 554 14 HOH HOH . H 7 HOH A 14 555 15 HOH HOH . H 7 HOH A 15 556 16 HOH HOH . H 7 HOH A 16 557 17 HOH HOH . H 7 HOH A 17 558 19 HOH HOH . H 7 HOH A 18 559 20 HOH HOH . H 7 HOH A 19 560 21 HOH HOH . H 7 HOH A 20 561 22 HOH HOH . H 7 HOH A 21 562 23 HOH HOH . H 7 HOH A 22 563 26 HOH HOH . H 7 HOH A 23 564 27 HOH HOH . H 7 HOH A 24 565 28 HOH HOH . H 7 HOH A 25 566 29 HOH HOH . H 7 HOH A 26 567 30 HOH HOH . H 7 HOH A 27 568 31 HOH HOH . H 7 HOH A 28 569 32 HOH HOH . H 7 HOH A 29 570 33 HOH HOH . H 7 HOH A 30 571 34 HOH HOH . H 7 HOH A 31 572 36 HOH HOH . H 7 HOH A 32 573 37 HOH HOH . H 7 HOH A 33 574 38 HOH HOH . H 7 HOH A 34 575 39 HOH HOH . H 7 HOH A 35 576 40 HOH HOH . H 7 HOH A 36 577 41 HOH HOH . H 7 HOH A 37 578 42 HOH HOH . H 7 HOH A 38 579 43 HOH HOH . H 7 HOH A 39 580 44 HOH HOH . H 7 HOH A 40 581 45 HOH HOH . H 7 HOH A 41 582 46 HOH HOH . H 7 HOH A 42 583 47 HOH HOH . H 7 HOH A 43 584 48 HOH HOH . H 7 HOH A 44 585 49 HOH HOH . H 7 HOH A 45 586 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -27.765 _atom_site.Cartn_y 27.031 _atom_site.Cartn_z -26.434 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 539 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #