data_3H33
#
_model_server_result.job_id            DZIV02stdFxw2q4BQQu9CA 
_model_server_result.datetime_utc      '2024-11-27 17:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":75}' 
#
_entry.id    3H33 
#
_exptl.entry_id    3H33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3H33 
_cell.length_a            79.2 
_cell.length_b            79.2 
_cell.length_c            67.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 17 A HIS 17 1_555 B FE HEM . A HEM 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc2 A NE2 HIS 20 A HIS 20 1_555 C FE HEM . A HEM 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 B FE HEM . A HEM 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D FE HEM . A HEM 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc5 A NE2 HIS 55 A HIS 55 1_555 C FE HEM . A HEM 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc6 A NE2 HIS 69 A HIS 69 1_555 D FE HEM . A HEM 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 113 n n 
CHA C4D HEM doub 114 n n 
CHA HHA HEM sing 115 n n 
CHB C4A HEM sing 116 n n 
CHB C1B HEM doub 117 n n 
CHB HHB HEM sing 118 n n 
CHC C4B HEM sing 119 n n 
CHC C1C HEM doub 120 n n 
CHC HHC HEM sing 121 n n 
CHD C4C HEM doub 122 n n 
CHD C1D HEM sing 123 n n 
CHD HHD HEM sing 124 n n 
C1A C2A HEM doub 125 n y 
C1A NA HEM sing 126 n y 
C2A C3A HEM sing 127 n y 
C2A CAA HEM sing 128 n n 
C3A C4A HEM doub 129 n y 
C3A CMA HEM sing 130 n n 
C4A NA HEM sing 131 n y 
CMA HMA HEM sing 132 n n 
CMA HMAA HEM sing 133 n n 
CMA HMAB HEM sing 134 n n 
CAA CBA HEM sing 135 n n 
CAA HAA HEM sing 136 n n 
CAA HAAA HEM sing 137 n n 
CBA CGA HEM sing 138 n n 
CBA HBA HEM sing 139 n n 
CBA HBAA HEM sing 140 n n 
CGA O1A HEM doub 141 n n 
CGA O2A HEM sing 142 n n 
C1B C2B HEM sing 143 n n 
C1B NB HEM sing 144 n n 
C2B C3B HEM doub 145 n n 
C2B CMB HEM sing 146 n n 
C3B C4B HEM sing 147 n n 
C3B CAB HEM sing 148 n n 
C4B NB HEM doub 149 n n 
CMB HMB HEM sing 150 n n 
CMB HMBA HEM sing 151 n n 
CMB HMBB HEM sing 152 n n 
CAB CBB HEM doub 153 n n 
CAB HAB HEM sing 154 n n 
CBB HBB HEM sing 155 n n 
CBB HBBA HEM sing 156 n n 
C1C C2C HEM sing 157 n y 
C1C NC HEM sing 158 n y 
C2C C3C HEM doub 159 n y 
C2C CMC HEM sing 160 n n 
C3C C4C HEM sing 161 n y 
C3C CAC HEM sing 162 n n 
C4C NC HEM sing 163 n y 
CMC HMC HEM sing 164 n n 
CMC HMCA HEM sing 165 n n 
CMC HMCB HEM sing 166 n n 
CAC CBC HEM doub 167 n n 
CAC HAC HEM sing 168 n n 
CBC HBC HEM sing 169 n n 
CBC HBCA HEM sing 170 n n 
C1D C2D HEM sing 171 n n 
C1D ND HEM doub 172 n n 
C2D C3D HEM doub 173 n n 
C2D CMD HEM sing 174 n n 
C3D C4D HEM sing 175 n n 
C3D CAD HEM sing 176 n n 
C4D ND HEM sing 177 n n 
CMD HMD HEM sing 178 n n 
CMD HMDA HEM sing 179 n n 
CMD HMDB HEM sing 180 n n 
CAD CBD HEM sing 181 n n 
CAD HAD HEM sing 182 n n 
CAD HADA HEM sing 183 n n 
CBD CGD HEM sing 184 n n 
CBD HBD HEM sing 185 n n 
CBD HBDA HEM sing 186 n n 
CGD O1D HEM doub 187 n n 
CGD O2D HEM sing 188 n n 
O2A H2A HEM sing 189 n n 
O2D H2D HEM sing 190 n n 
FE NA HEM sing 191 n n 
FE NB HEM sing 192 n n 
FE NC HEM sing 193 n n 
FE ND HEM sing 194 n n 
#
_atom_sites.entry_id                     3H33 
_atom_sites.fract_transf_matrix[1][1]    0.012626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 75 72 HEM HEM . 
C 2 HEM A 1 76 73 HEM HEM . 
D 2 HEM A 1 77 74 HEM HEM . 
E 3 SO4 A 1 150 150 SO4 SO4 . 
F 4 HOH A 1 101 101 HOH WAT . 
F 4 HOH A 2 102 102 HOH WAT . 
F 4 HOH A 3 103 103 HOH WAT . 
F 4 HOH A 4 104 104 HOH WAT . 
F 4 HOH A 5 105 105 HOH WAT . 
F 4 HOH A 6 106 106 HOH WAT . 
F 4 HOH A 7 107 107 HOH WAT . 
F 4 HOH A 8 109 109 HOH WAT . 
F 4 HOH A 9 110 110 HOH WAT . 
F 4 HOH A 10 111 111 HOH WAT . 
F 4 HOH A 11 112 112 HOH WAT . 
F 4 HOH A 12 113 113 HOH WAT . 
F 4 HOH A 13 114 114 HOH WAT . 
F 4 HOH A 14 115 115 HOH WAT . 
F 4 HOH A 15 116 116 HOH WAT . 
F 4 HOH A 16 117 117 HOH WAT . 
F 4 HOH A 17 118 118 HOH WAT . 
F 4 HOH A 18 119 119 HOH WAT . 
F 4 HOH A 19 120 120 HOH WAT . 
F 4 HOH A 20 121 121 HOH WAT . 
F 4 HOH A 21 122 122 HOH WAT . 
F 4 HOH A 22 124 124 HOH WAT . 
F 4 HOH A 23 125 125 HOH WAT . 
F 4 HOH A 24 126 126 HOH WAT . 
F 4 HOH A 25 127 127 HOH WAT . 
F 4 HOH A 26 128 128 HOH WAT . 
F 4 HOH A 27 129 129 HOH WAT . 
F 4 HOH A 28 130 130 HOH WAT . 
F 4 HOH A 29 131 131 HOH WAT . 
F 4 HOH A 30 132 132 HOH WAT . 
F 4 HOH A 31 133 133 HOH WAT . 
F 4 HOH A 32 134 134 HOH WAT . 
F 4 HOH A 33 135 135 HOH WAT . 
F 4 HOH A 34 136 136 HOH WAT . 
F 4 HOH A 35 138 138 HOH WAT . 
F 4 HOH A 36 139 139 HOH WAT . 
F 4 HOH A 37 140 140 HOH WAT . 
F 4 HOH A 38 141 141 HOH WAT . 
F 4 HOH A 39 142 142 HOH WAT . 
F 4 HOH A 40 143 143 HOH WAT . 
F 4 HOH A 41 144 144 HOH WAT . 
F 4 HOH A 42 145 145 HOH WAT . 
F 4 HOH A 43 146 146 HOH WAT . 
F 4 HOH A 44 148 148 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 21.536 17.684 2.858 1 22.31 ? CHA HEM 75 A 1 
HETATM 2 C CHB HEM . . . B 2 18.209 16.798 6.195 1 23.63 ? CHB HEM 75 A 1 
HETATM 3 C CHC HEM . . . B 2 20.736 13.071 7.752 1 26.09 ? CHC HEM 75 A 1 
HETATM 4 C CHD HEM . . . B 2 24.451 14.725 5.183 1 22.05 ? CHD HEM 75 A 1 
HETATM 5 C C1A HEM . . . B 2 20.32 17.62 3.507 1 24.69 ? C1A HEM 75 A 1 
HETATM 6 C C2A HEM . . . B 2 19.228 18.546 3.231 1 25.27 ? C2A HEM 75 A 1 
HETATM 7 C C3A HEM . . . B 2 18.343 18.394 4.251 1 25.38 ? C3A HEM 75 A 1 
HETATM 8 C C4A HEM . . . B 2 18.874 17.333 5.104 1 25.98 ? C4A HEM 75 A 1 
HETATM 9 C CMA HEM . . . B 2 17.078 19.209 4.512 1 24.01 ? CMA HEM 75 A 1 
HETATM 10 C CAA HEM . . . B 2 19.187 19.551 2.066 1 24.72 ? CAA HEM 75 A 1 
HETATM 11 C CBA HEM . . . B 2 19.879 20.855 2.438 1 24.38 ? CBA HEM 75 A 1 
HETATM 12 C CGA HEM . . . B 2 19.973 21.837 1.276 1 28.44 ? CGA HEM 75 A 1 
HETATM 13 O O1A HEM . . . B 2 19.317 21.614 0.231 1 25.13 ? O1A HEM 75 A 1 
HETATM 14 O O2A HEM . . . B 2 20.705 22.843 1.419 1 30.16 ? O2A HEM 75 A 1 
HETATM 15 C C1B HEM . . . B 2 18.611 15.728 6.952 1 26.24 ? C1B HEM 75 A 1 
HETATM 16 C C2B HEM . . . B 2 17.816 15.09 7.989 1 27.71 ? C2B HEM 75 A 1 
HETATM 17 C C3B HEM . . . B 2 18.493 13.975 8.368 1 27.53 ? C3B HEM 75 A 1 
HETATM 18 C C4B HEM . . . B 2 19.709 13.97 7.594 1 27.17 ? C4B HEM 75 A 1 
HETATM 19 C CMB HEM . . . B 2 16.468 15.586 8.509 1 27.28 ? CMB HEM 75 A 1 
HETATM 20 C CAB HEM . . . B 2 18.112 12.904 9.398 1 30.87 ? CAB HEM 75 A 1 
HETATM 21 C CBB HEM . . . B 2 16.752 12.257 9.212 1 28.97 ? CBB HEM 75 A 1 
HETATM 22 C C1C HEM . . . B 2 21.973 13.168 7.14 1 26.65 ? C1C HEM 75 A 1 
HETATM 23 C C2C HEM . . . B 2 23.115 12.312 7.45 1 26.31 ? C2C HEM 75 A 1 
HETATM 24 C C3C HEM . . . B 2 24.177 12.81 6.783 1 25.04 ? C3C HEM 75 A 1 
HETATM 25 C C4C HEM . . . B 2 23.676 13.968 6.048 1 25.47 ? C4C HEM 75 A 1 
HETATM 26 C CMC HEM . . . B 2 23.125 11.141 8.432 1 26.93 ? CMC HEM 75 A 1 
HETATM 27 C CAC HEM . . . B 2 25.643 12.392 6.922 1 27.28 ? CAC HEM 75 A 1 
HETATM 28 C CBC HEM . . . B 2 25.936 10.964 6.489 1 24.4 ? CBC HEM 75 A 1 
HETATM 29 C C1D HEM . . . B 2 24.006 15.713 4.333 1 21.79 ? C1D HEM 75 A 1 
HETATM 30 C C2D HEM . . . B 2 24.819 16.398 3.357 1 21.39 ? C2D HEM 75 A 1 
HETATM 31 C C3D HEM . . . B 2 23.989 17.234 2.664 1 21.72 ? C3D HEM 75 A 1 
HETATM 32 C C4D HEM . . . B 2 22.672 17.013 3.238 1 22.49 ? C4D HEM 75 A 1 
HETATM 33 C CMD HEM . . . B 2 26.323 16.226 3.186 1 20.57 ? CMD HEM 75 A 1 
HETATM 34 C CAD HEM . . . B 2 24.343 18.328 1.661 1 17.83 ? CAD HEM 75 A 1 
HETATM 35 C CBD HEM . . . B 2 24.623 19.632 2.41 1 21.08 ? CBD HEM 75 A 1 
HETATM 36 C CGD HEM . . . B 2 24.847 20.819 1.481 1 25.11 ? CGD HEM 75 A 1 
HETATM 37 O O1D HEM . . . B 2 25.147 21.923 1.982 1 24.22 ? O1D HEM 75 A 1 
HETATM 38 O O2D HEM . . . B 2 24.725 20.651 0.253 1 24.6 ? O2D HEM 75 A 1 
HETATM 39 N NA HEM . . . B 2 20.089 16.877 4.641 1 24.16 ? NA HEM 75 A 1 
HETATM 40 N NB HEM . . . B 2 19.772 15.044 6.728 1 26.37 ? NB HEM 75 A 1 
HETATM 41 N NC HEM . . . B 2 22.331 14.176 6.277 1 23.99 ? NC HEM 75 A 1 
HETATM 42 N ND HEM . . . B 2 22.702 16.108 4.272 1 21.8 ? ND HEM 75 A 1 
HETATM 43 FE FE HEM . . . B 2 21.218 15.524 5.484 1 24.61 ? FE HEM 75 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#