data_3H39 # _model_server_result.job_id '_E4RMhQZZ81bUoyRVk5EEQ' _model_server_result.datetime_utc '2024-12-21 14:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3H39 # _exptl.entry_id 3H39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.88 _cell.angle_gamma 90 _cell.entry_id 3H39 _cell.length_a 186.085 _cell.length_b 64.07 _cell.length_c 151.772 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3H39 _atom_sites.fract_transf_matrix[1][1] 0.005374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001033 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 501 501 ATP ATP . D 2 ATP B 1 502 502 ATP ATP . E 3 HOH A 1 442 1 HOH HOH . E 3 HOH A 2 443 2 HOH HOH . E 3 HOH A 3 444 3 HOH HOH . E 3 HOH A 4 445 4 HOH HOH . E 3 HOH A 5 446 5 HOH HOH . E 3 HOH A 6 447 6 HOH HOH . E 3 HOH A 7 448 7 HOH HOH . E 3 HOH A 8 449 8 HOH HOH . E 3 HOH A 9 450 9 HOH HOH . E 3 HOH A 10 451 10 HOH HOH . E 3 HOH A 11 452 11 HOH HOH . E 3 HOH A 12 453 12 HOH HOH . E 3 HOH A 13 454 13 HOH HOH . E 3 HOH A 14 455 14 HOH HOH . E 3 HOH A 15 456 17 HOH HOH . E 3 HOH A 16 457 18 HOH HOH . E 3 HOH A 17 458 19 HOH HOH . E 3 HOH A 18 459 20 HOH HOH . E 3 HOH A 19 460 21 HOH HOH . E 3 HOH A 20 461 24 HOH HOH . E 3 HOH A 21 462 25 HOH HOH . E 3 HOH A 22 463 26 HOH HOH . E 3 HOH A 23 464 27 HOH HOH . E 3 HOH A 24 465 28 HOH HOH . E 3 HOH A 25 466 29 HOH HOH . E 3 HOH A 26 467 35 HOH HOH . E 3 HOH A 27 468 36 HOH HOH . E 3 HOH A 28 469 37 HOH HOH . E 3 HOH A 29 470 38 HOH HOH . E 3 HOH A 30 471 39 HOH HOH . F 3 HOH B 1 442 15 HOH HOH . F 3 HOH B 2 443 16 HOH HOH . F 3 HOH B 3 444 22 HOH HOH . F 3 HOH B 4 445 23 HOH HOH . F 3 HOH B 5 446 30 HOH HOH . F 3 HOH B 6 447 31 HOH HOH . F 3 HOH B 7 448 32 HOH HOH . F 3 HOH B 8 449 33 HOH HOH . F 3 HOH B 9 450 34 HOH HOH . F 3 HOH B 10 451 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 49.487 24.219 82.199 1 55.75 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . C 2 49.846 23.159 83.196 1 26.38 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . C 2 50.599 24.95 81.487 1 62.07 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . C 2 48.4 25.124 82.719 1 73.05 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . C 2 47.6 22.459 81.184 1 55.73 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . C 2 47.983 21.019 80.99 1 44.92 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . C 2 46.829 22.903 82.412 1 59.36 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . C 2 48.883 23.389 80.976 1 102.66 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . C 2 45.98 24.305 79.802 1 51.67 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . C 2 45.378 24.579 81.152 1 50.6 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . C 2 46.876 25.336 79.162 1 60.92 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . C 2 46.832 22.945 79.876 1 59.53 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . C 2 44.845 23.643 78.873 1 41 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . C 2 44.28 22.449 79.429 1 35.8 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . C 2 44.187 21.291 78.461 1 37.92 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . C 2 43.774 21.847 77.231 1 44.75 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . C 2 45.499 20.604 78.127 1 43.36 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . C 2 45.789 19.536 79.026 1 45.49 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . C 2 45.295 20.138 76.693 1 38.05 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . C 2 44.552 18.926 76.652 1 34.99 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . C 2 44.35 21.162 76.131 1 30.89 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . C 2 45.005 22.24 75.385 1 30.61 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . C 2 45.322 23.443 75.89 1 32.72 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . C 2 45.881 24.227 74.922 1 44.24 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . C 2 45.923 23.523 73.771 1 29.37 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . C 2 46.396 23.736 72.388 1 28.47 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . C 2 46.958 24.879 71.978 1 37.62 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . C 2 46.251 22.726 71.519 1 44.74 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . C 2 45.699 21.546 71.881 1 43.23 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . C 2 45.264 21.263 73.119 1 28.76 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . C 2 45.333 22.207 74.089 1 34.33 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #