data_3H3A # _model_server_result.job_id WImVEQyIC3JE0T6EyzT6nw _model_server_result.datetime_utc '2024-11-25 16:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3H3A # _exptl.entry_id 3H3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.31 _cell.angle_gamma 90 _cell.entry_id 3H3A _cell.length_a 190.451 _cell.length_b 63.586 _cell.length_c 152.578 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 3H3A _atom_sites.fract_transf_matrix[1][1] 0.005251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CTP A 1 501 501 CTP CTP . D 2 CTP B 1 502 502 CTP CTP . E 3 HOH A 1 442 3 HOH HOH . E 3 HOH A 2 443 4 HOH HOH . E 3 HOH A 3 444 7 HOH HOH . E 3 HOH A 4 445 9 HOH HOH . E 3 HOH A 5 446 12 HOH HOH . E 3 HOH A 6 447 17 HOH HOH . F 3 HOH B 1 442 1 HOH HOH . F 3 HOH B 2 443 2 HOH HOH . F 3 HOH B 3 444 5 HOH HOH . F 3 HOH B 4 445 6 HOH HOH . F 3 HOH B 5 446 8 HOH HOH . F 3 HOH B 6 447 10 HOH HOH . F 3 HOH B 7 448 11 HOH HOH . F 3 HOH B 8 449 13 HOH HOH . F 3 HOH B 9 450 14 HOH HOH . F 3 HOH B 10 451 15 HOH HOH . F 3 HOH B 11 452 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . D 2 61.2 23.81 1.004 1 97.25 ? N1 CTP 502 B 1 HETATM 2 C C2 CTP . . . D 2 61.532 23.424 -0.287 1 93.47 ? C2 CTP 502 B 1 HETATM 3 N N3 CTP . . . D 2 62.073 24.325 -1.188 1 91.68 ? N3 CTP 502 B 1 HETATM 4 C C4 CTP . . . D 2 62.455 25.577 -0.746 1 97.16 ? C4 CTP 502 B 1 HETATM 5 C C5 CTP . . . D 2 62.149 25.966 0.562 1 102.8 ? C5 CTP 502 B 1 HETATM 6 C C6 CTP . . . D 2 61.484 25.085 1.421 1 95.77 ? C6 CTP 502 B 1 HETATM 7 O O2 CTP . . . D 2 61.345 22.263 -0.632 1 91.01 ? O2 CTP 502 B 1 HETATM 8 N N4 CTP . . . D 2 63.107 26.398 -1.563 1 90.17 ? N4 CTP 502 B 1 HETATM 9 C C1' CTP . . . D 2 60.367 22.92 1.845 1 108.1 ? C1' CTP 502 B 1 HETATM 10 C C2' CTP . . . D 2 61.248 21.992 2.654 1 108.4 ? C2' CTP 502 B 1 HETATM 11 O O2' CTP . . . D 2 60.573 20.764 2.739 1 93.3 ? O2' CTP 502 B 1 HETATM 12 C C3' CTP . . . D 2 61.288 22.62 4.028 1 124.05 ? C3' CTP 502 B 1 HETATM 13 C C4' CTP . . . D 2 59.944 23.329 4.096 1 127.28 ? C4' CTP 502 B 1 HETATM 14 O O4' CTP . . . D 2 59.633 23.697 2.769 1 122.81 ? O4' CTP 502 B 1 HETATM 15 O O3' CTP . . . D 2 61.457 21.651 5.035 1 130.47 ? O3' CTP 502 B 1 HETATM 16 C C5' CTP . . . D 2 59.928 24.555 5.004 1 127.52 ? C5' CTP 502 B 1 HETATM 17 O O5' CTP . . . D 2 60.767 25.591 4.543 1 125.51 ? O5' CTP 502 B 1 HETATM 18 P PA CTP . . . D 2 61.779 26.174 5.643 1 111.58 ? PA CTP 502 B 1 HETATM 19 O O1A CTP . . . D 2 60.876 26.794 6.678 1 106.19 ? O1A CTP 502 B 1 HETATM 20 O O2A CTP . . . D 2 62.822 27.184 5.181 1 106.52 ? O2A CTP 502 B 1 HETATM 21 O O3A CTP . . . D 2 62.444 24.793 6.164 1 239.86 ? O3A CTP 502 B 1 HETATM 22 P PB CTP . . . D 2 63.67 24.788 7.202 1 132.53 ? PB CTP 502 B 1 HETATM 23 O O1B CTP . . . D 2 64.967 24.892 6.452 1 132.93 ? O1B CTP 502 B 1 HETATM 24 O O2B CTP . . . D 2 63.662 23.594 8.121 1 134.98 ? O2B CTP 502 B 1 HETATM 25 O O3B CTP . . . D 2 63.407 26.15 8.015 1 387.04 ? O3B CTP 502 B 1 HETATM 26 P PG CTP . . . D 2 64.63 27.183 8.063 1 150.85 ? PG CTP 502 B 1 HETATM 27 O O1G CTP . . . D 2 65.776 26.366 8.612 1 135.42 ? O1G CTP 502 B 1 HETATM 28 O O2G CTP . . . D 2 64.847 27.706 6.648 1 134.98 ? O2G CTP 502 B 1 HETATM 29 O O3G CTP . . . D 2 64.329 28.339 8.997 1 159.7 ? O3G CTP 502 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #