data_3H3N # _model_server_result.job_id nfw0KL38I0jGIMGqM_Gi8w _model_server_result.datetime_utc '2025-05-21 14:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3126}' # _entry.id 3H3N # _exptl.entry_id 3H3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H3N _cell.length_a 96.812 _cell.length_b 200.464 _cell.length_c 56.505 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3H3N _atom_sites.fract_transf_matrix[1][1] 0.010329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL X 1 1000 1000 GOL GOL . D 3 EDO X 1 3122 3122 EDO EDO . E 3 EDO X 1 3123 3123 EDO EDO . F 3 EDO X 1 3125 3125 EDO EDO . G 4 PO4 X 1 507 2 PO4 PO4 . H 2 GOL O 1 1001 1001 GOL GOL . I 3 EDO O 1 3124 3124 EDO EDO . J 3 EDO O 1 3126 3126 EDO EDO . K 3 EDO O 1 3127 3127 EDO EDO . L 4 PO4 O 1 507 1 PO4 PO4 . M 5 HOH X 1 508 8 HOH HOH . M 5 HOH X 2 509 9 HOH HOH . M 5 HOH X 3 510 10 HOH HOH . M 5 HOH X 4 511 12 HOH HOH . M 5 HOH X 5 512 13 HOH HOH . M 5 HOH X 6 513 14 HOH HOH . M 5 HOH X 7 514 15 HOH HOH . M 5 HOH X 8 515 16 HOH HOH . M 5 HOH X 9 516 17 HOH HOH . M 5 HOH X 10 517 18 HOH HOH . M 5 HOH X 11 518 21 HOH HOH . M 5 HOH X 12 519 23 HOH HOH . M 5 HOH X 13 520 24 HOH HOH . M 5 HOH X 14 521 27 HOH HOH . M 5 HOH X 15 522 28 HOH HOH . M 5 HOH X 16 523 29 HOH HOH . M 5 HOH X 17 524 30 HOH HOH . M 5 HOH X 18 525 31 HOH HOH . M 5 HOH X 19 526 32 HOH HOH . M 5 HOH X 20 527 38 HOH HOH . M 5 HOH X 21 528 40 HOH HOH . M 5 HOH X 22 529 46 HOH HOH . M 5 HOH X 23 530 47 HOH HOH . M 5 HOH X 24 531 50 HOH HOH . M 5 HOH X 25 532 51 HOH HOH . M 5 HOH X 26 533 52 HOH HOH . M 5 HOH X 27 534 54 HOH HOH . M 5 HOH X 28 535 55 HOH HOH . M 5 HOH X 29 536 56 HOH HOH . M 5 HOH X 30 537 57 HOH HOH . M 5 HOH X 31 538 58 HOH HOH . M 5 HOH X 32 539 60 HOH HOH . M 5 HOH X 33 540 62 HOH HOH . M 5 HOH X 34 541 64 HOH HOH . M 5 HOH X 35 542 65 HOH HOH . M 5 HOH X 36 543 70 HOH HOH . M 5 HOH X 37 544 71 HOH HOH . M 5 HOH X 38 545 72 HOH HOH . M 5 HOH X 39 546 73 HOH HOH . M 5 HOH X 40 547 75 HOH HOH . M 5 HOH X 41 548 76 HOH HOH . M 5 HOH X 42 549 78 HOH HOH . M 5 HOH X 43 550 79 HOH HOH . M 5 HOH X 44 551 80 HOH HOH . M 5 HOH X 45 552 81 HOH HOH . M 5 HOH X 46 553 83 HOH HOH . M 5 HOH X 47 554 85 HOH HOH . M 5 HOH X 48 555 87 HOH HOH . M 5 HOH X 49 556 96 HOH HOH . M 5 HOH X 50 557 98 HOH HOH . M 5 HOH X 51 558 102 HOH HOH . M 5 HOH X 52 559 105 HOH HOH . M 5 HOH X 53 560 106 HOH HOH . M 5 HOH X 54 561 110 HOH HOH . M 5 HOH X 55 562 111 HOH HOH . M 5 HOH X 56 563 116 HOH HOH . M 5 HOH X 57 564 117 HOH HOH . M 5 HOH X 58 565 120 HOH HOH . M 5 HOH X 59 566 121 HOH HOH . M 5 HOH X 60 567 122 HOH HOH . M 5 HOH X 61 568 123 HOH HOH . M 5 HOH X 62 569 129 HOH HOH . M 5 HOH X 63 570 130 HOH HOH . M 5 HOH X 64 571 133 HOH HOH . M 5 HOH X 65 572 134 HOH HOH . M 5 HOH X 66 573 135 HOH HOH . M 5 HOH X 67 574 137 HOH HOH . M 5 HOH X 68 575 139 HOH HOH . M 5 HOH X 69 576 141 HOH HOH . M 5 HOH X 70 577 142 HOH HOH . M 5 HOH X 71 578 143 HOH HOH . M 5 HOH X 72 579 144 HOH HOH . M 5 HOH X 73 580 145 HOH HOH . M 5 HOH X 74 581 146 HOH HOH . M 5 HOH X 75 582 149 HOH HOH . M 5 HOH X 76 583 151 HOH HOH . M 5 HOH X 77 584 152 HOH HOH . M 5 HOH X 78 585 154 HOH HOH . M 5 HOH X 79 586 156 HOH HOH . M 5 HOH X 80 587 158 HOH HOH . M 5 HOH X 81 588 160 HOH HOH . M 5 HOH X 82 589 161 HOH HOH . M 5 HOH X 83 590 163 HOH HOH . M 5 HOH X 84 591 164 HOH HOH . M 5 HOH X 85 592 168 HOH HOH . M 5 HOH X 86 593 171 HOH HOH . M 5 HOH X 87 594 172 HOH HOH . M 5 HOH X 88 595 173 HOH HOH . M 5 HOH X 89 596 176 HOH HOH . M 5 HOH X 90 597 177 HOH HOH . M 5 HOH X 91 598 179 HOH HOH . M 5 HOH X 92 599 180 HOH HOH . M 5 HOH X 93 600 185 HOH HOH . M 5 HOH X 94 601 186 HOH HOH . M 5 HOH X 95 602 187 HOH HOH . M 5 HOH X 96 603 188 HOH HOH . M 5 HOH X 97 604 190 HOH HOH . M 5 HOH X 98 605 191 HOH HOH . M 5 HOH X 99 606 193 HOH HOH . M 5 HOH X 100 607 194 HOH HOH . M 5 HOH X 101 608 195 HOH HOH . M 5 HOH X 102 609 198 HOH HOH . M 5 HOH X 103 610 199 HOH HOH . M 5 HOH X 104 611 201 HOH HOH . M 5 HOH X 105 612 205 HOH HOH . M 5 HOH X 106 613 206 HOH HOH . M 5 HOH X 107 614 207 HOH HOH . M 5 HOH X 108 615 208 HOH HOH . M 5 HOH X 109 616 209 HOH HOH . M 5 HOH X 110 617 210 HOH HOH . M 5 HOH X 111 618 214 HOH HOH . M 5 HOH X 112 619 215 HOH HOH . M 5 HOH X 113 620 216 HOH HOH . M 5 HOH X 114 621 217 HOH HOH . M 5 HOH X 115 622 218 HOH HOH . M 5 HOH X 116 623 221 HOH HOH . M 5 HOH X 117 624 223 HOH HOH . M 5 HOH X 118 625 224 HOH HOH . M 5 HOH X 119 626 225 HOH HOH . M 5 HOH X 120 627 226 HOH HOH . M 5 HOH X 121 628 228 HOH HOH . M 5 HOH X 122 629 229 HOH HOH . M 5 HOH X 123 630 235 HOH HOH . M 5 HOH X 124 631 236 HOH HOH . M 5 HOH X 125 632 238 HOH HOH . M 5 HOH X 126 633 239 HOH HOH . M 5 HOH X 127 634 241 HOH HOH . M 5 HOH X 128 635 242 HOH HOH . M 5 HOH X 129 636 243 HOH HOH . M 5 HOH X 130 637 244 HOH HOH . M 5 HOH X 131 638 245 HOH HOH . M 5 HOH X 132 639 246 HOH HOH . M 5 HOH X 133 640 247 HOH HOH . M 5 HOH X 134 641 248 HOH HOH . M 5 HOH X 135 642 252 HOH HOH . M 5 HOH X 136 643 255 HOH HOH . M 5 HOH X 137 644 88 HOH HOH . M 5 HOH X 138 645 262 HOH HOH . M 5 HOH X 139 646 263 HOH HOH . M 5 HOH X 140 647 272 HOH HOH . M 5 HOH X 141 648 276 HOH HOH . M 5 HOH X 142 649 277 HOH HOH . M 5 HOH X 143 650 278 HOH HOH . M 5 HOH X 144 651 280 HOH HOH . M 5 HOH X 145 652 281 HOH HOH . M 5 HOH X 146 653 284 HOH HOH . M 5 HOH X 147 654 285 HOH HOH . M 5 HOH X 148 655 286 HOH HOH . M 5 HOH X 149 656 287 HOH HOH . M 5 HOH X 150 657 290 HOH HOH . M 5 HOH X 151 658 292 HOH HOH . M 5 HOH X 152 659 293 HOH HOH . M 5 HOH X 153 660 294 HOH HOH . M 5 HOH X 154 661 329 HOH HOH . M 5 HOH X 155 662 345 HOH HOH . M 5 HOH X 156 663 346 HOH HOH . M 5 HOH X 157 664 1 HOH HOH . M 5 HOH X 158 665 93 HOH HOH . M 5 HOH X 159 666 183 HOH HOH . M 5 HOH X 160 667 192 HOH HOH . M 5 HOH X 161 668 332 HOH HOH . M 5 HOH X 162 669 430 HOH HOH . M 5 HOH X 163 670 433 HOH HOH . M 5 HOH X 164 671 1 HOH HOH . N 5 HOH O 1 508 3 HOH HOH . N 5 HOH O 2 509 4 HOH HOH . N 5 HOH O 3 510 6 HOH HOH . N 5 HOH O 4 511 7 HOH HOH . N 5 HOH O 5 512 11 HOH HOH . N 5 HOH O 6 513 19 HOH HOH . N 5 HOH O 7 514 20 HOH HOH . N 5 HOH O 8 515 22 HOH HOH . N 5 HOH O 9 516 25 HOH HOH . N 5 HOH O 10 517 26 HOH HOH . N 5 HOH O 11 518 33 HOH HOH . N 5 HOH O 12 519 34 HOH HOH . N 5 HOH O 13 520 35 HOH HOH . N 5 HOH O 14 521 36 HOH HOH . N 5 HOH O 15 522 37 HOH HOH . N 5 HOH O 16 523 41 HOH HOH . N 5 HOH O 17 524 42 HOH HOH . N 5 HOH O 18 525 43 HOH HOH . N 5 HOH O 19 526 44 HOH HOH . N 5 HOH O 20 527 45 HOH HOH . N 5 HOH O 21 528 48 HOH HOH . N 5 HOH O 22 529 49 HOH HOH . N 5 HOH O 23 530 53 HOH HOH . N 5 HOH O 24 531 59 HOH HOH . N 5 HOH O 25 532 61 HOH HOH . N 5 HOH O 26 533 63 HOH HOH . N 5 HOH O 27 534 66 HOH HOH . N 5 HOH O 28 535 67 HOH HOH . N 5 HOH O 29 536 68 HOH HOH . N 5 HOH O 30 537 74 HOH HOH . N 5 HOH O 31 538 77 HOH HOH . N 5 HOH O 32 539 82 HOH HOH . N 5 HOH O 33 540 84 HOH HOH . N 5 HOH O 34 541 86 HOH HOH . N 5 HOH O 35 542 2 HOH HOH . N 5 HOH O 36 543 89 HOH HOH . N 5 HOH O 37 544 90 HOH HOH . N 5 HOH O 38 545 91 HOH HOH . N 5 HOH O 39 547 94 HOH HOH . N 5 HOH O 40 548 95 HOH HOH . N 5 HOH O 41 549 97 HOH HOH . N 5 HOH O 42 550 99 HOH HOH . N 5 HOH O 43 551 101 HOH HOH . N 5 HOH O 44 552 103 HOH HOH . N 5 HOH O 45 553 104 HOH HOH . N 5 HOH O 46 554 107 HOH HOH . N 5 HOH O 47 555 108 HOH HOH . N 5 HOH O 48 556 109 HOH HOH . N 5 HOH O 49 557 112 HOH HOH . N 5 HOH O 50 558 113 HOH HOH . N 5 HOH O 51 559 114 HOH HOH . N 5 HOH O 52 560 115 HOH HOH . N 5 HOH O 53 561 118 HOH HOH . N 5 HOH O 54 562 119 HOH HOH . N 5 HOH O 55 563 124 HOH HOH . N 5 HOH O 56 564 125 HOH HOH . N 5 HOH O 57 565 126 HOH HOH . N 5 HOH O 58 566 127 HOH HOH . N 5 HOH O 59 567 128 HOH HOH . N 5 HOH O 60 568 131 HOH HOH . N 5 HOH O 61 569 132 HOH HOH . N 5 HOH O 62 570 136 HOH HOH . N 5 HOH O 63 571 138 HOH HOH . N 5 HOH O 64 572 147 HOH HOH . N 5 HOH O 65 573 148 HOH HOH . N 5 HOH O 66 574 150 HOH HOH . N 5 HOH O 67 575 153 HOH HOH . N 5 HOH O 68 576 157 HOH HOH . N 5 HOH O 69 577 159 HOH HOH . N 5 HOH O 70 578 162 HOH HOH . N 5 HOH O 71 579 165 HOH HOH . N 5 HOH O 72 580 166 HOH HOH . N 5 HOH O 73 581 167 HOH HOH . N 5 HOH O 74 582 169 HOH HOH . N 5 HOH O 75 583 170 HOH HOH . N 5 HOH O 76 584 174 HOH HOH . N 5 HOH O 77 585 175 HOH HOH . N 5 HOH O 78 586 178 HOH HOH . N 5 HOH O 79 587 181 HOH HOH . N 5 HOH O 80 588 182 HOH HOH . N 5 HOH O 81 590 184 HOH HOH . N 5 HOH O 82 592 197 HOH HOH . N 5 HOH O 83 593 200 HOH HOH . N 5 HOH O 84 594 202 HOH HOH . N 5 HOH O 85 595 204 HOH HOH . N 5 HOH O 86 596 211 HOH HOH . N 5 HOH O 87 597 298 HOH HOH . N 5 HOH O 88 598 302 HOH HOH . N 5 HOH O 89 599 309 HOH HOH . N 5 HOH O 90 600 312 HOH HOH . N 5 HOH O 91 601 313 HOH HOH . N 5 HOH O 92 602 319 HOH HOH . N 5 HOH O 93 603 322 HOH HOH . N 5 HOH O 94 604 323 HOH HOH . N 5 HOH O 95 605 324 HOH HOH . N 5 HOH O 96 606 326 HOH HOH . N 5 HOH O 97 607 327 HOH HOH . N 5 HOH O 98 608 328 HOH HOH . N 5 HOH O 99 609 330 HOH HOH . N 5 HOH O 100 610 331 HOH HOH . N 5 HOH O 101 612 333 HOH HOH . N 5 HOH O 102 613 334 HOH HOH . N 5 HOH O 103 614 335 HOH HOH . N 5 HOH O 104 615 336 HOH HOH . N 5 HOH O 105 616 337 HOH HOH . N 5 HOH O 106 617 338 HOH HOH . N 5 HOH O 107 618 340 HOH HOH . N 5 HOH O 108 619 348 HOH HOH . N 5 HOH O 109 620 349 HOH HOH . N 5 HOH O 110 621 350 HOH HOH . N 5 HOH O 111 622 351 HOH HOH . N 5 HOH O 112 623 353 HOH HOH . N 5 HOH O 113 624 357 HOH HOH . N 5 HOH O 114 625 358 HOH HOH . N 5 HOH O 115 626 359 HOH HOH . N 5 HOH O 116 627 360 HOH HOH . N 5 HOH O 117 628 361 HOH HOH . N 5 HOH O 118 629 364 HOH HOH . N 5 HOH O 119 630 367 HOH HOH . N 5 HOH O 120 631 368 HOH HOH . N 5 HOH O 121 632 372 HOH HOH . N 5 HOH O 122 633 373 HOH HOH . N 5 HOH O 123 634 374 HOH HOH . N 5 HOH O 124 635 381 HOH HOH . N 5 HOH O 125 636 382 HOH HOH . N 5 HOH O 126 637 383 HOH HOH . N 5 HOH O 127 638 384 HOH HOH . N 5 HOH O 128 639 389 HOH HOH . N 5 HOH O 129 640 393 HOH HOH . N 5 HOH O 130 641 400 HOH HOH . N 5 HOH O 131 642 401 HOH HOH . N 5 HOH O 132 643 403 HOH HOH . N 5 HOH O 133 644 257 HOH HOH . N 5 HOH O 134 645 407 HOH HOH . N 5 HOH O 135 646 408 HOH HOH . N 5 HOH O 136 647 410 HOH HOH . N 5 HOH O 137 648 411 HOH HOH . N 5 HOH O 138 649 412 HOH HOH . N 5 HOH O 139 650 413 HOH HOH . N 5 HOH O 140 651 415 HOH HOH . N 5 HOH O 141 652 420 HOH HOH . N 5 HOH O 142 653 421 HOH HOH . N 5 HOH O 143 654 423 HOH HOH . N 5 HOH O 144 655 424 HOH HOH . N 5 HOH O 145 656 425 HOH HOH . N 5 HOH O 146 657 428 HOH HOH . N 5 HOH O 147 658 404 HOH HOH . N 5 HOH O 148 659 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 -21.799 10.106 5.258 1 61.88 ? C1 EDO 3126 O 1 HETATM 2 O O1 EDO . . . J 3 -22.62 10.021 6.423 1 61.11 ? O1 EDO 3126 O 1 HETATM 3 C C2 EDO . . . J 3 -21.507 11.571 4.94 1 58.59 ? C2 EDO 3126 O 1 HETATM 4 O O2 EDO . . . J 3 -20.729 12.144 5.992 1 57.28 ? O2 EDO 3126 O 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #