data_3H3Q
#
_model_server_result.job_id            HHswYFwDf6ks-QeO4wXerg 
_model_server_result.datetime_utc      '2025-07-31 18:41:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    3H3Q 
#
_exptl.entry_id    3H3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.561 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tridecanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.64 
_cell.angle_gamma         90 
_cell.entry_id            3H3Q 
_cell.length_a            42.48 
_cell.length_b            74.706 
_cell.length_c            77.605 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H39 N O3' 
_chem_comp.formula_weight    377.561 
_chem_comp.id                H13 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tridecanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C21 H13 doub 129 n n 
C21 N2 H13 sing 130 n n 
C21 C22 H13 sing 131 n n 
N2 C2 H13 sing 132 n n 
C2 C1 H13 sing 133 n n 
C2 C3 H13 sing 134 n n 
C1 O1 H13 sing 135 n n 
C3 C4 H13 sing 136 n n 
C4 C5 H13 sing 137 n n 
C4 O4 H13 sing 138 n n 
C5 C6 H13 doub 139 n y 
C5 C10 H13 sing 140 n y 
C6 C7 H13 sing 141 n y 
C7 C8 H13 doub 142 n y 
C8 C9 H13 sing 143 n y 
C9 C10 H13 doub 144 n y 
C22 C23 H13 sing 145 n n 
C23 C24 H13 sing 146 n n 
C24 C25 H13 sing 147 n n 
C25 C26 H13 sing 148 n n 
C26 C27 H13 sing 149 n n 
C27 C28 H13 sing 150 n n 
C28 C29 H13 sing 151 n n 
C29 C30 H13 sing 152 n n 
C30 C31 H13 sing 153 n n 
C31 C32 H13 sing 154 n n 
C32 C33 H13 sing 155 n n 
N2 HN2 H13 sing 156 n n 
C2 H2 H13 sing 157 n n 
C1 H1 H13 sing 158 n n 
C1 H1A H13 sing 159 n n 
O1 HO1 H13 sing 160 n n 
C3 H3 H13 sing 161 n n 
C3 H3A H13 sing 162 n n 
C4 H4 H13 sing 163 n n 
C6 H6 H13 sing 164 n n 
C7 H7 H13 sing 165 n n 
C8 H8 H13 sing 166 n n 
C9 H9 H13 sing 167 n n 
C10 H10 H13 sing 168 n n 
O4 HO4 H13 sing 169 n n 
C22 H22 H13 sing 170 n n 
C22 H22A H13 sing 171 n n 
C23 H23 H13 sing 172 n n 
C23 H23A H13 sing 173 n n 
C24 H24 H13 sing 174 n n 
C24 H24A H13 sing 175 n n 
C25 H25 H13 sing 176 n n 
C25 H25A H13 sing 177 n n 
C26 H26 H13 sing 178 n n 
C26 H26A H13 sing 179 n n 
C27 H27 H13 sing 180 n n 
C27 H27A H13 sing 181 n n 
C28 H28 H13 sing 182 n n 
C28 H28A H13 sing 183 n n 
C29 H29 H13 sing 184 n n 
C29 H29A H13 sing 185 n n 
C30 H30 H13 sing 186 n n 
C30 H30A H13 sing 187 n n 
C31 H31 H13 sing 188 n n 
C31 H31A H13 sing 189 n n 
C32 H32 H13 sing 190 n n 
C32 H32A H13 sing 191 n n 
C33 H33 H13 sing 192 n n 
C33 H33A H13 sing 193 n n 
C33 H33B H13 sing 194 n n 
#
_atom_sites.entry_id                     3H3Q 
_atom_sites.fract_transf_matrix[1][1]    0.02354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005278 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 H13 A 1 600 600 H13 PHM . 
D 2 H13 B 1 600 600 H13 PHM . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 7 7 HOH HOH . 
E 3 HOH A 3 8 8 HOH HOH . 
E 3 HOH A 4 12 12 HOH HOH . 
E 3 HOH A 5 14 14 HOH HOH . 
E 3 HOH A 6 15 15 HOH HOH . 
E 3 HOH A 7 17 17 HOH HOH . 
E 3 HOH A 8 23 23 HOH HOH . 
E 3 HOH A 9 24 24 HOH HOH . 
E 3 HOH A 10 28 28 HOH HOH . 
E 3 HOH A 11 29 29 HOH HOH . 
E 3 HOH A 12 30 30 HOH HOH . 
E 3 HOH A 13 31 31 HOH HOH . 
E 3 HOH A 14 32 32 HOH HOH . 
E 3 HOH A 15 35 35 HOH HOH . 
E 3 HOH A 16 37 37 HOH HOH . 
E 3 HOH A 17 39 39 HOH HOH . 
E 3 HOH A 18 42 42 HOH HOH . 
E 3 HOH A 19 46 46 HOH HOH . 
E 3 HOH A 20 49 49 HOH HOH . 
E 3 HOH A 21 50 50 HOH HOH . 
E 3 HOH A 22 54 54 HOH HOH . 
E 3 HOH A 23 55 55 HOH HOH . 
E 3 HOH A 24 56 56 HOH HOH . 
E 3 HOH A 25 63 63 HOH HOH . 
E 3 HOH A 26 71 71 HOH HOH . 
E 3 HOH A 27 72 72 HOH HOH . 
E 3 HOH A 28 74 74 HOH HOH . 
F 3 HOH B 1 1 1 HOH HOH . 
F 3 HOH B 2 3 3 HOH HOH . 
F 3 HOH B 3 4 4 HOH HOH . 
F 3 HOH B 4 5 5 HOH HOH . 
F 3 HOH B 5 6 6 HOH HOH . 
F 3 HOH B 6 9 9 HOH HOH . 
F 3 HOH B 7 10 10 HOH HOH . 
F 3 HOH B 8 11 11 HOH HOH . 
F 3 HOH B 9 13 13 HOH HOH . 
F 3 HOH B 10 16 16 HOH HOH . 
F 3 HOH B 11 18 18 HOH HOH . 
F 3 HOH B 12 19 19 HOH HOH . 
F 3 HOH B 13 21 21 HOH HOH . 
F 3 HOH B 14 22 22 HOH HOH . 
F 3 HOH B 15 25 25 HOH HOH . 
F 3 HOH B 16 26 26 HOH HOH . 
F 3 HOH B 17 27 27 HOH HOH . 
F 3 HOH B 18 36 36 HOH HOH . 
F 3 HOH B 19 38 38 HOH HOH . 
F 3 HOH B 20 40 40 HOH HOH . 
F 3 HOH B 21 41 41 HOH HOH . 
F 3 HOH B 22 43 43 HOH HOH . 
F 3 HOH B 23 44 44 HOH HOH . 
F 3 HOH B 24 45 45 HOH HOH . 
F 3 HOH B 25 47 47 HOH HOH . 
F 3 HOH B 26 48 48 HOH HOH . 
F 3 HOH B 27 51 51 HOH HOH . 
F 3 HOH B 28 53 53 HOH HOH . 
F 3 HOH B 29 57 57 HOH HOH . 
F 3 HOH B 30 58 58 HOH HOH . 
F 3 HOH B 31 59 59 HOH HOH . 
F 3 HOH B 32 60 60 HOH HOH . 
F 3 HOH B 33 65 65 HOH HOH . 
F 3 HOH B 34 66 66 HOH HOH . 
F 3 HOH B 35 67 67 HOH HOH . 
F 3 HOH B 36 68 68 HOH HOH . 
F 3 HOH B 37 73 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 H13 . . . D 2 -4.262 0.708 -3.962 1 29.21 ? O21 H13 600 B 1 
HETATM 2 C C21 H13 . . . D 2 -4.588 1.149 -5.033 1 31.19 ? C21 H13 600 B 1 
HETATM 3 N N2 H13 . . . D 2 -5.386 0.489 -5.867 1 29.01 ? N2 H13 600 B 1 
HETATM 4 C C2 H13 . . . D 2 -6.345 -0.538 -5.459 1 26.7 ? C2 H13 600 B 1 
HETATM 5 C C1 H13 . . . D 2 -7.67 -0.254 -6.146 1 25.21 ? C1 H13 600 B 1 
HETATM 6 O O1 H13 . . . D 2 -7.29 -0.251 -7.546 1 28.62 ? O1 H13 600 B 1 
HETATM 7 C C3 H13 . . . D 2 -5.795 -1.89 -5.946 1 27.07 ? C3 H13 600 B 1 
HETATM 8 C C4 H13 . . . D 2 -4.408 -1.844 -5.331 1 28.44 ? C4 H13 600 B 1 
HETATM 9 C C5 H13 . . . D 2 -3.171 -1.754 -6.16 1 28.61 ? C5 H13 600 B 1 
HETATM 10 C C6 H13 . . . D 2 -3.077 -2.069 -7.511 1 30.96 ? C6 H13 600 B 1 
HETATM 11 C C7 H13 . . . D 2 -1.882 -1.82 -8.185 1 25.41 ? C7 H13 600 B 1 
HETATM 12 C C8 H13 . . . D 2 -0.801 -1.236 -7.565 1 28.23 ? C8 H13 600 B 1 
HETATM 13 C C9 H13 . . . D 2 -0.894 -0.889 -6.215 1 27.21 ? C9 H13 600 B 1 
HETATM 14 C C10 H13 . . . D 2 -2.08 -1.127 -5.552 1 27.98 ? C10 H13 600 B 1 
HETATM 15 O O4 H13 . . . D 2 -4.391 -2.158 -3.925 1 27.26 ? O4 H13 600 B 1 
HETATM 16 C C22 H13 . . . D 2 -4.108 2.517 -5.447 1 32.61 ? C22 H13 600 B 1 
HETATM 17 C C23 H13 . . . D 2 -2.721 2.479 -6.025 1 34 ? C23 H13 600 B 1 
HETATM 18 C C24 H13 . . . D 2 -2.485 3.721 -6.871 1 33.92 ? C24 H13 600 B 1 
HETATM 19 C C25 H13 . . . D 2 -0.999 3.847 -7.179 1 37.99 ? C25 H13 600 B 1 
HETATM 20 C C26 H13 . . . D 2 -0.574 2.727 -8.129 1 40.44 ? C26 H13 600 B 1 
HETATM 21 C C27 H13 . . . D 2 0.657 3.067 -8.967 1 43.62 ? C27 H13 600 B 1 
HETATM 22 C C28 H13 . . . D 2 0.385 2.854 -10.46 1 45.16 ? C28 H13 600 B 1 
HETATM 23 C C29 H13 . . . D 2 -0.057 1.427 -10.806 1 45.05 ? C29 H13 600 B 1 
HETATM 24 C C30 H13 . . . D 2 1.129 0.644 -11.357 1 47.61 ? C30 H13 600 B 1 
HETATM 25 C C31 H13 . . . D 2 0.715 -0.564 -12.181 1 46.29 ? C31 H13 600 B 1 
HETATM 26 C C32 H13 . . . D 2 1.064 -1.816 -11.389 1 45.98 ? C32 H13 600 B 1 
HETATM 27 C C33 H13 . . . D 2 -0.084 -2.816 -11.406 1 45.7 ? C33 H13 600 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#