data_3H44
#
_model_server_result.job_id            npPW0SRjwl84ZHjKWBXeRQ 
_model_server_result.datetime_utc      '2024-12-22 15:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h44 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2001}' 
#
_entry.id    3H44 
#
_exptl.entry_id    3H44 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3H44 
_cell.length_a            262.737 
_cell.length_b            262.737 
_cell.length_c            90.502 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H44 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,L,M,O 1 1 
B,D,H,I,J,K,N,P 1 2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1 
A,C,E,F,G,L,M,O 3 1 
B,D,H,I,J,K,N,P 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 15.083667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 L ZN ZN . C ZN 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 L ZN ZN . C ZN 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc3 A OE2 GLU 160 A GLU 189 1_555 L ZN ZN . C ZN 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc4 H ZN ZN . B ZN 1 1_555 B NE2 HIS 79 B HIS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc5 H ZN ZN . B ZN 1 1_555 B NE2 HIS 83 B HIS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc6 H ZN ZN . B ZN 1 1_555 D O ARG 48 D ARG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     3H44 
_atom_sites.fract_transf_matrix[1][1]    0.003806 
_atom_sites.fract_transf_matrix[1][2]    0.002197 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004395 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DIO A 1 2000 2000 DIO DIO . 
F 3 DIO A 1 2001 2001 DIO DIO . 
G 3 DIO A 1 2002 2002 DIO DIO . 
H 4 ZN B 1 1 1 ZN ZN . 
I 3 DIO B 1 2000 2000 DIO DIO . 
J 3 DIO B 1 2001 2001 DIO DIO . 
K 3 DIO B 1 2002 2002 DIO DIO . 
L 4 ZN C 1 42 2 ZN ZN . 
M 5 HOH A 1 1 1 HOH HOH . 
M 5 HOH A 2 4 4 HOH HOH . 
M 5 HOH A 3 5 5 HOH HOH . 
M 5 HOH A 4 7 7 HOH HOH . 
M 5 HOH A 5 8 8 HOH HOH . 
M 5 HOH A 6 9 9 HOH HOH . 
M 5 HOH A 7 11 11 HOH HOH . 
M 5 HOH A 8 14 14 HOH HOH . 
M 5 HOH A 9 15 15 HOH HOH . 
M 5 HOH A 10 16 16 HOH HOH . 
M 5 HOH A 11 17 17 HOH HOH . 
M 5 HOH A 12 20 20 HOH HOH . 
M 5 HOH A 13 21 21 HOH HOH . 
M 5 HOH A 14 22 22 HOH HOH . 
M 5 HOH A 15 23 23 HOH HOH . 
M 5 HOH A 16 27 27 HOH HOH . 
M 5 HOH A 17 28 28 HOH HOH . 
M 5 HOH A 18 29 29 HOH HOH . 
M 5 HOH A 19 1020 30 HOH HOH . 
M 5 HOH A 20 1021 32 HOH HOH . 
M 5 HOH A 21 1022 33 HOH HOH . 
M 5 HOH A 22 1023 35 HOH HOH . 
M 5 HOH A 23 1024 36 HOH HOH . 
M 5 HOH A 24 1025 38 HOH HOH . 
M 5 HOH A 25 1026 39 HOH HOH . 
M 5 HOH A 26 1027 42 HOH HOH . 
M 5 HOH A 27 1028 44 HOH HOH . 
M 5 HOH A 28 1029 45 HOH HOH . 
M 5 HOH A 29 1030 46 HOH HOH . 
M 5 HOH A 30 1031 47 HOH HOH . 
M 5 HOH A 31 1032 48 HOH HOH . 
M 5 HOH A 32 1033 49 HOH HOH . 
M 5 HOH A 33 1034 50 HOH HOH . 
M 5 HOH A 34 1035 52 HOH HOH . 
M 5 HOH A 35 1036 54 HOH HOH . 
M 5 HOH A 36 1037 55 HOH HOH . 
M 5 HOH A 37 1038 57 HOH HOH . 
M 5 HOH A 38 1039 58 HOH HOH . 
M 5 HOH A 39 1040 59 HOH HOH . 
M 5 HOH A 40 1041 63 HOH HOH . 
M 5 HOH A 41 1042 70 HOH HOH . 
M 5 HOH A 42 1043 71 HOH HOH . 
M 5 HOH A 43 1044 72 HOH HOH . 
M 5 HOH A 44 1045 73 HOH HOH . 
M 5 HOH A 45 1046 74 HOH HOH . 
M 5 HOH A 46 1047 77 HOH HOH . 
M 5 HOH A 47 1048 79 HOH HOH . 
M 5 HOH A 48 1049 80 HOH HOH . 
M 5 HOH A 49 1050 87 HOH HOH . 
M 5 HOH A 50 1051 88 HOH HOH . 
M 5 HOH A 51 1052 94 HOH HOH . 
M 5 HOH A 52 1053 96 HOH HOH . 
M 5 HOH A 53 1054 98 HOH HOH . 
M 5 HOH A 54 1055 100 HOH HOH . 
M 5 HOH A 55 1056 102 HOH HOH . 
M 5 HOH A 56 1057 104 HOH HOH . 
M 5 HOH A 57 1058 107 HOH HOH . 
M 5 HOH A 58 1059 110 HOH HOH . 
M 5 HOH A 59 1060 114 HOH HOH . 
M 5 HOH A 60 1061 115 HOH HOH . 
M 5 HOH A 61 1062 117 HOH HOH . 
M 5 HOH A 62 1063 118 HOH HOH . 
M 5 HOH A 63 1064 121 HOH HOH . 
M 5 HOH A 64 1065 122 HOH HOH . 
M 5 HOH A 65 1066 126 HOH HOH . 
M 5 HOH A 66 1067 133 HOH HOH . 
N 5 HOH B 1 2 2 HOH HOH . 
N 5 HOH B 2 3 3 HOH HOH . 
N 5 HOH B 3 6 6 HOH HOH . 
N 5 HOH B 4 12 12 HOH HOH . 
N 5 HOH B 5 13 13 HOH HOH . 
N 5 HOH B 6 18 18 HOH HOH . 
N 5 HOH B 7 19 19 HOH HOH . 
N 5 HOH B 8 24 24 HOH HOH . 
N 5 HOH B 9 25 25 HOH HOH . 
N 5 HOH B 10 26 26 HOH HOH . 
N 5 HOH B 11 1020 31 HOH HOH . 
N 5 HOH B 12 1021 34 HOH HOH . 
N 5 HOH B 13 1022 37 HOH HOH . 
N 5 HOH B 14 1023 40 HOH HOH . 
N 5 HOH B 15 1024 41 HOH HOH . 
N 5 HOH B 16 1025 43 HOH HOH . 
N 5 HOH B 17 1026 51 HOH HOH . 
N 5 HOH B 18 1027 53 HOH HOH . 
N 5 HOH B 19 1028 56 HOH HOH . 
N 5 HOH B 20 1029 60 HOH HOH . 
N 5 HOH B 21 1030 61 HOH HOH . 
N 5 HOH B 22 1031 62 HOH HOH . 
N 5 HOH B 23 1032 64 HOH HOH . 
N 5 HOH B 24 1033 65 HOH HOH . 
N 5 HOH B 25 1034 66 HOH HOH . 
N 5 HOH B 26 1035 67 HOH HOH . 
N 5 HOH B 27 1036 68 HOH HOH . 
N 5 HOH B 28 1037 69 HOH HOH . 
N 5 HOH B 29 1038 75 HOH HOH . 
N 5 HOH B 30 1039 76 HOH HOH . 
N 5 HOH B 31 1040 78 HOH HOH . 
N 5 HOH B 32 1041 81 HOH HOH . 
N 5 HOH B 33 1042 82 HOH HOH . 
N 5 HOH B 34 1043 83 HOH HOH . 
N 5 HOH B 35 1044 84 HOH HOH . 
N 5 HOH B 36 1045 85 HOH HOH . 
N 5 HOH B 37 1046 89 HOH HOH . 
N 5 HOH B 38 1047 90 HOH HOH . 
N 5 HOH B 39 1048 91 HOH HOH . 
N 5 HOH B 40 1049 92 HOH HOH . 
N 5 HOH B 41 1050 95 HOH HOH . 
N 5 HOH B 42 1051 97 HOH HOH . 
N 5 HOH B 43 1052 99 HOH HOH . 
N 5 HOH B 44 1053 101 HOH HOH . 
N 5 HOH B 45 1054 103 HOH HOH . 
N 5 HOH B 46 1055 105 HOH HOH . 
N 5 HOH B 47 1056 106 HOH HOH . 
N 5 HOH B 48 1057 108 HOH HOH . 
N 5 HOH B 49 1058 109 HOH HOH . 
N 5 HOH B 50 1059 111 HOH HOH . 
N 5 HOH B 51 1060 112 HOH HOH . 
N 5 HOH B 52 1061 116 HOH HOH . 
N 5 HOH B 53 1062 119 HOH HOH . 
N 5 HOH B 54 1063 120 HOH HOH . 
N 5 HOH B 55 1064 123 HOH HOH . 
N 5 HOH B 56 1065 124 HOH HOH . 
N 5 HOH B 57 1066 125 HOH HOH . 
N 5 HOH B 58 1067 127 HOH HOH . 
N 5 HOH B 59 1068 129 HOH HOH . 
N 5 HOH B 60 1069 131 HOH HOH . 
N 5 HOH B 61 1070 132 HOH HOH . 
O 5 HOH C 1 128 128 HOH HOH . 
P 5 HOH D 1 10 10 HOH HOH . 
P 5 HOH D 2 86 86 HOH HOH . 
P 5 HOH D 3 93 93 HOH HOH . 
P 5 HOH D 4 113 113 HOH HOH . 
P 5 HOH D 5 130 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . F 3 -115.754 47.048 -2.705 1 155.6 ? C1 DIO 2001 A 1 
HETATM 2 C C2 DIO . . . F 3 -117.794 47.891 -1.651 1 155.85 ? C2 DIO 2001 A 1 
HETATM 3 C C1' DIO . . . F 3 -115.762 48.282 -3.614 1 155.74 ? C1' DIO 2001 A 1 
HETATM 4 C C2' DIO . . . F 3 -117.811 49.072 -2.629 1 155.78 ? C2' DIO 2001 A 1 
HETATM 5 O O1 DIO . . . F 3 -116.487 47.304 -1.501 1 155.76 ? O1 DIO 2001 A 1 
HETATM 6 O O1' DIO . . . F 3 -117.097 48.755 -3.829 1 155.75 ? O1' DIO 2001 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#