data_3H46 # _model_server_result.job_id nIGLnUugeRkiNOSXhwysAw _model_server_result.datetime_utc '2025-08-31 08:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3123}' # _entry.id 3H46 # _exptl.entry_id 3H46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H46 _cell.length_a 96.677 _cell.length_b 199.548 _cell.length_c 56.813 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3H46 _atom_sites.fract_transf_matrix[1][1] 0.010344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 X 1 507 2 SO4 SO4 . D 3 GOL X 1 1001 1001 GOL GOL . E 4 EDO X 1 3122 3122 EDO EDO . F 2 SO4 O 1 507 1 SO4 SO4 . G 3 GOL O 1 1000 1000 GOL GOL . H 4 EDO O 1 3123 3123 EDO EDO . I 5 HOH X 1 508 3 HOH HOH . I 5 HOH X 2 509 4 HOH HOH . I 5 HOH X 3 510 8 HOH HOH . I 5 HOH X 4 511 11 HOH HOH . I 5 HOH X 5 512 12 HOH HOH . I 5 HOH X 6 513 15 HOH HOH . I 5 HOH X 7 514 16 HOH HOH . I 5 HOH X 8 515 17 HOH HOH . I 5 HOH X 9 516 20 HOH HOH . I 5 HOH X 10 517 22 HOH HOH . I 5 HOH X 11 518 26 HOH HOH . I 5 HOH X 12 519 27 HOH HOH . I 5 HOH X 13 520 29 HOH HOH . I 5 HOH X 14 521 30 HOH HOH . I 5 HOH X 15 522 31 HOH HOH . I 5 HOH X 16 523 33 HOH HOH . I 5 HOH X 17 524 35 HOH HOH . I 5 HOH X 18 525 37 HOH HOH . I 5 HOH X 19 526 39 HOH HOH . I 5 HOH X 20 527 42 HOH HOH . I 5 HOH X 21 528 45 HOH HOH . I 5 HOH X 22 529 46 HOH HOH . I 5 HOH X 23 530 49 HOH HOH . I 5 HOH X 24 531 50 HOH HOH . I 5 HOH X 25 532 53 HOH HOH . I 5 HOH X 26 533 59 HOH HOH . I 5 HOH X 27 534 60 HOH HOH . I 5 HOH X 28 535 61 HOH HOH . I 5 HOH X 29 536 64 HOH HOH . I 5 HOH X 30 537 66 HOH HOH . I 5 HOH X 31 538 57 HOH HOH . I 5 HOH X 32 539 68 HOH HOH . I 5 HOH X 33 540 71 HOH HOH . I 5 HOH X 34 541 72 HOH HOH . I 5 HOH X 35 542 74 HOH HOH . I 5 HOH X 36 543 76 HOH HOH . I 5 HOH X 37 544 77 HOH HOH . I 5 HOH X 38 545 79 HOH HOH . I 5 HOH X 39 546 80 HOH HOH . I 5 HOH X 40 547 81 HOH HOH . I 5 HOH X 41 548 82 HOH HOH . I 5 HOH X 42 549 89 HOH HOH . I 5 HOH X 43 550 94 HOH HOH . I 5 HOH X 44 551 95 HOH HOH . I 5 HOH X 45 552 97 HOH HOH . I 5 HOH X 46 553 98 HOH HOH . I 5 HOH X 47 554 99 HOH HOH . I 5 HOH X 48 555 104 HOH HOH . I 5 HOH X 49 556 105 HOH HOH . I 5 HOH X 50 557 106 HOH HOH . I 5 HOH X 51 558 107 HOH HOH . I 5 HOH X 52 559 108 HOH HOH . I 5 HOH X 53 560 111 HOH HOH . I 5 HOH X 54 561 114 HOH HOH . I 5 HOH X 55 562 122 HOH HOH . I 5 HOH X 56 563 123 HOH HOH . I 5 HOH X 57 564 124 HOH HOH . I 5 HOH X 58 565 125 HOH HOH . I 5 HOH X 59 566 126 HOH HOH . I 5 HOH X 60 567 132 HOH HOH . I 5 HOH X 61 568 133 HOH HOH . I 5 HOH X 62 569 134 HOH HOH . I 5 HOH X 63 570 135 HOH HOH . I 5 HOH X 64 571 136 HOH HOH . I 5 HOH X 65 572 137 HOH HOH . I 5 HOH X 66 573 138 HOH HOH . I 5 HOH X 67 574 139 HOH HOH . I 5 HOH X 68 575 140 HOH HOH . I 5 HOH X 69 576 141 HOH HOH . I 5 HOH X 70 577 143 HOH HOH . I 5 HOH X 71 578 144 HOH HOH . I 5 HOH X 72 579 145 HOH HOH . I 5 HOH X 73 580 146 HOH HOH . I 5 HOH X 74 581 147 HOH HOH . I 5 HOH X 75 582 148 HOH HOH . I 5 HOH X 76 583 149 HOH HOH . I 5 HOH X 77 584 150 HOH HOH . I 5 HOH X 78 585 151 HOH HOH . I 5 HOH X 79 586 152 HOH HOH . I 5 HOH X 80 587 153 HOH HOH . I 5 HOH X 81 588 157 HOH HOH . I 5 HOH X 82 590 176 HOH HOH . I 5 HOH X 83 591 178 HOH HOH . I 5 HOH X 84 592 179 HOH HOH . I 5 HOH X 85 593 181 HOH HOH . I 5 HOH X 86 594 182 HOH HOH . I 5 HOH X 87 595 184 HOH HOH . I 5 HOH X 88 596 186 HOH HOH . I 5 HOH X 89 597 188 HOH HOH . I 5 HOH X 90 598 189 HOH HOH . I 5 HOH X 91 599 191 HOH HOH . I 5 HOH X 92 600 192 HOH HOH . I 5 HOH X 93 601 193 HOH HOH . I 5 HOH X 94 602 195 HOH HOH . I 5 HOH X 95 603 196 HOH HOH . I 5 HOH X 96 604 198 HOH HOH . I 5 HOH X 97 605 200 HOH HOH . J 5 HOH O 1 508 1 HOH HOH . J 5 HOH O 2 509 2 HOH HOH . J 5 HOH O 3 510 5 HOH HOH . J 5 HOH O 4 511 6 HOH HOH . J 5 HOH O 5 512 7 HOH HOH . J 5 HOH O 6 513 9 HOH HOH . J 5 HOH O 7 514 10 HOH HOH . J 5 HOH O 8 515 13 HOH HOH . J 5 HOH O 9 516 14 HOH HOH . J 5 HOH O 10 517 18 HOH HOH . J 5 HOH O 11 518 19 HOH HOH . J 5 HOH O 12 519 21 HOH HOH . J 5 HOH O 13 520 23 HOH HOH . J 5 HOH O 14 521 24 HOH HOH . J 5 HOH O 15 522 25 HOH HOH . J 5 HOH O 16 523 28 HOH HOH . J 5 HOH O 17 524 32 HOH HOH . J 5 HOH O 18 525 34 HOH HOH . J 5 HOH O 19 526 36 HOH HOH . J 5 HOH O 20 527 38 HOH HOH . J 5 HOH O 21 528 40 HOH HOH . J 5 HOH O 22 529 41 HOH HOH . J 5 HOH O 23 530 43 HOH HOH . J 5 HOH O 24 531 44 HOH HOH . J 5 HOH O 25 532 47 HOH HOH . J 5 HOH O 26 533 48 HOH HOH . J 5 HOH O 27 534 51 HOH HOH . J 5 HOH O 28 535 54 HOH HOH . J 5 HOH O 29 536 55 HOH HOH . J 5 HOH O 30 537 56 HOH HOH . J 5 HOH O 31 538 67 HOH HOH . J 5 HOH O 32 539 58 HOH HOH . J 5 HOH O 33 540 62 HOH HOH . J 5 HOH O 34 541 63 HOH HOH . J 5 HOH O 35 542 65 HOH HOH . J 5 HOH O 36 543 70 HOH HOH . J 5 HOH O 37 544 73 HOH HOH . J 5 HOH O 38 545 75 HOH HOH . J 5 HOH O 39 546 78 HOH HOH . J 5 HOH O 40 547 83 HOH HOH . J 5 HOH O 41 548 84 HOH HOH . J 5 HOH O 42 549 86 HOH HOH . J 5 HOH O 43 550 87 HOH HOH . J 5 HOH O 44 551 90 HOH HOH . J 5 HOH O 45 552 91 HOH HOH . J 5 HOH O 46 553 93 HOH HOH . J 5 HOH O 47 554 96 HOH HOH . J 5 HOH O 48 555 100 HOH HOH . J 5 HOH O 49 556 101 HOH HOH . J 5 HOH O 50 557 102 HOH HOH . J 5 HOH O 51 558 109 HOH HOH . J 5 HOH O 52 559 110 HOH HOH . J 5 HOH O 53 560 112 HOH HOH . J 5 HOH O 54 561 115 HOH HOH . J 5 HOH O 55 562 116 HOH HOH . J 5 HOH O 56 563 117 HOH HOH . J 5 HOH O 57 564 118 HOH HOH . J 5 HOH O 58 565 119 HOH HOH . J 5 HOH O 59 566 120 HOH HOH . J 5 HOH O 60 567 127 HOH HOH . J 5 HOH O 61 568 128 HOH HOH . J 5 HOH O 62 569 129 HOH HOH . J 5 HOH O 63 570 130 HOH HOH . J 5 HOH O 64 571 131 HOH HOH . J 5 HOH O 65 572 154 HOH HOH . J 5 HOH O 66 573 155 HOH HOH . J 5 HOH O 67 574 156 HOH HOH . J 5 HOH O 68 575 158 HOH HOH . J 5 HOH O 69 576 159 HOH HOH . J 5 HOH O 70 577 160 HOH HOH . J 5 HOH O 71 578 161 HOH HOH . J 5 HOH O 72 579 162 HOH HOH . J 5 HOH O 73 580 163 HOH HOH . J 5 HOH O 74 581 164 HOH HOH . J 5 HOH O 75 582 165 HOH HOH . J 5 HOH O 76 583 166 HOH HOH . J 5 HOH O 77 584 167 HOH HOH . J 5 HOH O 78 585 168 HOH HOH . J 5 HOH O 79 586 169 HOH HOH . J 5 HOH O 80 587 170 HOH HOH . J 5 HOH O 81 588 171 HOH HOH . J 5 HOH O 82 589 173 HOH HOH . J 5 HOH O 83 590 175 HOH HOH . J 5 HOH O 84 591 177 HOH HOH . J 5 HOH O 85 592 180 HOH HOH . J 5 HOH O 86 593 183 HOH HOH . J 5 HOH O 87 594 185 HOH HOH . J 5 HOH O 88 595 187 HOH HOH . J 5 HOH O 89 596 190 HOH HOH . J 5 HOH O 90 597 194 HOH HOH . J 5 HOH O 91 598 197 HOH HOH . J 5 HOH O 92 599 199 HOH HOH . J 5 HOH O 93 600 202 HOH HOH . J 5 HOH O 94 601 1 HOH HOH . J 5 HOH O 95 602 172 HOH HOH . J 5 HOH O 96 606 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -1.083 29.996 11.604 1 38.96 ? C1 EDO 3123 O 1 HETATM 2 O O1 EDO . . . H 4 -0.973 28.727 12.255 1 38.62 ? O1 EDO 3123 O 1 HETATM 3 C C2 EDO . . . H 4 -1.605 31.052 12.577 1 38.88 ? C2 EDO 3123 O 1 HETATM 4 O O2 EDO . . . H 4 -0.544 31.951 12.958 1 38.78 ? O2 EDO 3123 O 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 627 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #