data_3H4K # _model_server_result.job_id qx-RV551YD2OUCIqqiS1BA _model_server_result.datetime_utc '2025-01-10 10:54:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":599}' # _entry.id 3H4K # _exptl.entry_id 3H4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.16 _cell.angle_gamma 90 _cell.entry_id 3H4K _cell.length_a 147.515 _cell.length_b 102.166 _cell.length_c 60.572 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 122.723719 0 55.266261 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 154 A CYS 154 1_555 D AU AU . A AU 601 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 159 A CYS 159 1_555 D AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A SG CYS 574 A CYS 574 1_555 C AU AU . A AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3H4K _atom_sites.fract_transf_matrix[1][1] 0.006779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 599 599 FAD FAD . C 3 AU A 1 600 600 AU AU . D 3 AU A 1 601 601 AU AU . E 3 AU A 1 602 602 AU AU . F 4 K A 1 603 603 K K . G 5 GSH A 1 604 604 GSH GSH . H 6 PG4 A 1 605 605 PG4 PG4 . I 6 PG4 A 1 606 606 PG4 PG4 . J 7 HOH A 1 608 608 HOH HOH . J 7 HOH A 2 609 609 HOH HOH . J 7 HOH A 3 610 610 HOH HOH . J 7 HOH A 4 611 611 HOH HOH . J 7 HOH A 5 612 612 HOH HOH . J 7 HOH A 6 613 613 HOH HOH . J 7 HOH A 7 614 614 HOH HOH . J 7 HOH A 8 615 615 HOH HOH . J 7 HOH A 9 616 616 HOH HOH . J 7 HOH A 10 617 617 HOH HOH . J 7 HOH A 11 618 618 HOH HOH . J 7 HOH A 12 619 619 HOH HOH . J 7 HOH A 13 620 620 HOH HOH . J 7 HOH A 14 621 621 HOH HOH . J 7 HOH A 15 622 622 HOH HOH . J 7 HOH A 16 623 623 HOH HOH . J 7 HOH A 17 624 624 HOH HOH . J 7 HOH A 18 625 625 HOH HOH . J 7 HOH A 19 626 626 HOH HOH . J 7 HOH A 20 627 627 HOH HOH . J 7 HOH A 21 628 628 HOH HOH . J 7 HOH A 22 629 629 HOH HOH . J 7 HOH A 23 630 630 HOH HOH . J 7 HOH A 24 631 631 HOH HOH . J 7 HOH A 25 632 632 HOH HOH . J 7 HOH A 26 633 633 HOH HOH . J 7 HOH A 27 634 634 HOH HOH . J 7 HOH A 28 635 635 HOH HOH . J 7 HOH A 29 636 636 HOH HOH . J 7 HOH A 30 637 637 HOH HOH . J 7 HOH A 31 638 638 HOH HOH . J 7 HOH A 32 639 639 HOH HOH . J 7 HOH A 33 640 640 HOH HOH . J 7 HOH A 34 641 641 HOH HOH . J 7 HOH A 35 642 642 HOH HOH . J 7 HOH A 36 643 643 HOH HOH . J 7 HOH A 37 644 644 HOH HOH . J 7 HOH A 38 645 645 HOH HOH . J 7 HOH A 39 646 646 HOH HOH . J 7 HOH A 40 647 647 HOH HOH . J 7 HOH A 41 648 648 HOH HOH . J 7 HOH A 42 649 649 HOH HOH . J 7 HOH A 43 650 650 HOH HOH . J 7 HOH A 44 651 651 HOH HOH . J 7 HOH A 45 652 652 HOH HOH . J 7 HOH A 46 653 653 HOH HOH . J 7 HOH A 47 654 654 HOH HOH . J 7 HOH A 48 655 655 HOH HOH . J 7 HOH A 49 656 656 HOH HOH . J 7 HOH A 50 657 657 HOH HOH . J 7 HOH A 51 658 658 HOH HOH . J 7 HOH A 52 659 659 HOH HOH . J 7 HOH A 53 660 660 HOH HOH . J 7 HOH A 54 661 661 HOH HOH . J 7 HOH A 55 662 662 HOH HOH . J 7 HOH A 56 663 663 HOH HOH . J 7 HOH A 57 664 664 HOH HOH . J 7 HOH A 58 665 665 HOH HOH . J 7 HOH A 59 666 666 HOH HOH . J 7 HOH A 60 667 667 HOH HOH . J 7 HOH A 61 668 668 HOH HOH . J 7 HOH A 62 669 669 HOH HOH . J 7 HOH A 63 670 670 HOH HOH . J 7 HOH A 64 671 671 HOH HOH . J 7 HOH A 65 672 672 HOH HOH . J 7 HOH A 66 673 673 HOH HOH . J 7 HOH A 67 674 674 HOH HOH . J 7 HOH A 68 675 675 HOH HOH . J 7 HOH A 69 676 676 HOH HOH . J 7 HOH A 70 677 677 HOH HOH . J 7 HOH A 71 678 678 HOH HOH . J 7 HOH A 72 679 679 HOH HOH . J 7 HOH A 73 680 680 HOH HOH . J 7 HOH A 74 681 681 HOH HOH . J 7 HOH A 75 682 682 HOH HOH . J 7 HOH A 76 683 683 HOH HOH . J 7 HOH A 77 684 684 HOH HOH . J 7 HOH A 78 685 685 HOH HOH . J 7 HOH A 79 686 686 HOH HOH . J 7 HOH A 80 687 687 HOH HOH . J 7 HOH A 81 688 688 HOH HOH . J 7 HOH A 82 689 689 HOH HOH . J 7 HOH A 83 690 690 HOH HOH . J 7 HOH A 84 691 691 HOH HOH . J 7 HOH A 85 692 692 HOH HOH . J 7 HOH A 86 693 693 HOH HOH . J 7 HOH A 87 694 694 HOH HOH . J 7 HOH A 88 695 695 HOH HOH . J 7 HOH A 89 696 696 HOH HOH . J 7 HOH A 90 697 697 HOH HOH . J 7 HOH A 91 698 698 HOH HOH . J 7 HOH A 92 699 699 HOH HOH . J 7 HOH A 93 700 700 HOH HOH . J 7 HOH A 94 701 701 HOH HOH . J 7 HOH A 95 702 702 HOH HOH . J 7 HOH A 96 703 703 HOH HOH . J 7 HOH A 97 704 704 HOH HOH . J 7 HOH A 98 705 705 HOH HOH . J 7 HOH A 99 706 706 HOH HOH . J 7 HOH A 100 707 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 39.216 -3.259 12.899 1 24.79 ? PA FAD 599 A 1 HETATM 2 O O1A FAD . . . B 2 39.546 -4.254 11.809 1 24.67 ? O1A FAD 599 A 1 HETATM 3 O O2A FAD . . . B 2 39.834 -3.654 14.22 1 25.34 ? O2A FAD 599 A 1 HETATM 4 O O5B FAD . . . B 2 37.631 -3.106 13.082 1 24.94 ? O5B FAD 599 A 1 HETATM 5 C C5B FAD . . . B 2 36.78 -2.903 11.981 1 24.71 ? C5B FAD 599 A 1 HETATM 6 C C4B FAD . . . B 2 35.545 -3.766 12.193 1 24.64 ? C4B FAD 599 A 1 HETATM 7 O O4B FAD . . . B 2 34.435 -3.244 11.486 1 24.5 ? O4B FAD 599 A 1 HETATM 8 C C3B FAD . . . B 2 35.781 -5.174 11.671 1 24.6 ? C3B FAD 599 A 1 HETATM 9 O O3B FAD . . . B 2 35.419 -6.087 12.683 1 24.49 ? O3B FAD 599 A 1 HETATM 10 C C2B FAD . . . B 2 34.862 -5.283 10.469 1 24.11 ? C2B FAD 599 A 1 HETATM 11 O O2B FAD . . . B 2 34.359 -6.583 10.289 1 24.5 ? O2B FAD 599 A 1 HETATM 12 C C1B FAD . . . B 2 33.763 -4.307 10.84 1 23.88 ? C1B FAD 599 A 1 HETATM 13 N N9A FAD . . . B 2 32.975 -3.847 9.681 1 23.59 ? N9A FAD 599 A 1 HETATM 14 C C8A FAD . . . B 2 33.416 -3.628 8.403 1 23.37 ? C8A FAD 599 A 1 HETATM 15 N N7A FAD . . . B 2 32.372 -3.219 7.654 1 23.26 ? N7A FAD 599 A 1 HETATM 16 C C5A FAD . . . B 2 31.269 -3.175 8.429 1 23.29 ? C5A FAD 599 A 1 HETATM 17 C C6A FAD . . . B 2 29.947 -2.826 8.163 1 23.53 ? C6A FAD 599 A 1 HETATM 18 N N6A FAD . . . B 2 29.669 -2.122 7.07 1 23.55 ? N6A FAD 599 A 1 HETATM 19 N N1A FAD . . . B 2 29.015 -2.879 9.183 1 23.55 ? N1A FAD 599 A 1 HETATM 20 C C2A FAD . . . B 2 29.394 -3.273 10.453 1 23.7 ? C2A FAD 599 A 1 HETATM 21 N N3A FAD . . . B 2 30.71 -3.616 10.704 1 23.37 ? N3A FAD 599 A 1 HETATM 22 C C4A FAD . . . B 2 31.633 -3.567 9.709 1 23.26 ? C4A FAD 599 A 1 HETATM 23 N N1 FAD . . . B 2 48.419 -3.272 15.146 1 24.14 ? N1 FAD 599 A 1 HETATM 24 C C2 FAD . . . B 2 49.276 -2.958 16.188 1 24.4 ? C2 FAD 599 A 1 HETATM 25 O O2 FAD . . . B 2 49.194 -1.863 16.749 1 24.38 ? O2 FAD 599 A 1 HETATM 26 N N3 FAD . . . B 2 50.224 -3.876 16.602 1 24.29 ? N3 FAD 599 A 1 HETATM 27 C C4 FAD . . . B 2 50.321 -5.106 15.978 1 24.33 ? C4 FAD 599 A 1 HETATM 28 O O4 FAD . . . B 2 51.171 -5.915 16.352 1 24.57 ? O4 FAD 599 A 1 HETATM 29 C C4X FAD . . . B 2 49.461 -5.423 14.926 1 24.08 ? C4X FAD 599 A 1 HETATM 30 N N5 FAD . . . B 2 49.548 -6.651 14.305 1 24.03 ? N5 FAD 599 A 1 HETATM 31 C C5X FAD . . . B 2 48.7 -6.979 13.267 1 24.33 ? C5X FAD 599 A 1 HETATM 32 C C6 FAD . . . B 2 48.812 -8.227 12.654 1 24.29 ? C6 FAD 599 A 1 HETATM 33 C C7 FAD . . . B 2 47.962 -8.571 11.603 1 24.33 ? C7 FAD 599 A 1 HETATM 34 C C7M FAD . . . B 2 48.111 -9.926 10.967 1 24.34 ? C7M FAD 599 A 1 HETATM 35 C C8 FAD . . . B 2 46.993 -7.658 11.17 1 24.26 ? C8 FAD 599 A 1 HETATM 36 C C8M FAD . . . B 2 46.058 -7.989 10.043 1 24.25 ? C8M FAD 599 A 1 HETATM 37 C C9 FAD . . . B 2 46.884 -6.411 11.787 1 24.33 ? C9 FAD 599 A 1 HETATM 38 C C9A FAD . . . B 2 47.735 -6.062 12.839 1 24.48 ? C9A FAD 599 A 1 HETATM 39 N N10 FAD . . . B 2 47.641 -4.821 13.462 1 24.63 ? N10 FAD 599 A 1 HETATM 40 C C10 FAD . . . B 2 48.505 -4.498 14.504 1 24.19 ? C10 FAD 599 A 1 HETATM 41 C C1' FAD . . . B 2 46.765 -3.755 12.864 1 24.7 ? C1' FAD 599 A 1 HETATM 42 C C2' FAD . . . B 2 45.559 -3.531 13.77 1 25.34 ? C2' FAD 599 A 1 HETATM 43 O O2' FAD . . . B 2 44.88 -4.753 13.956 1 25.63 ? O2' FAD 599 A 1 HETATM 44 C C3' FAD . . . B 2 44.607 -2.501 13.179 1 25.78 ? C3' FAD 599 A 1 HETATM 45 O O3' FAD . . . B 2 45.297 -1.288 12.952 1 26.23 ? O3' FAD 599 A 1 HETATM 46 C C4' FAD . . . B 2 43.415 -2.274 14.103 1 25.85 ? C4' FAD 599 A 1 HETATM 47 O O4' FAD . . . B 2 42.579 -3.409 14.084 1 25.88 ? O4' FAD 599 A 1 HETATM 48 C C5' FAD . . . B 2 42.606 -1.067 13.658 1 25.4 ? C5' FAD 599 A 1 HETATM 49 O O5' FAD . . . B 2 41.326 -1.154 14.228 1 25.12 ? O5' FAD 599 A 1 HETATM 50 P P FAD . . . B 2 40.045 -0.612 13.423 1 24.9 ? P FAD 599 A 1 HETATM 51 O O1P FAD . . . B 2 38.914 -0.401 14.399 1 24.34 ? O1P FAD 599 A 1 HETATM 52 O O2P FAD . . . B 2 40.382 0.645 12.661 1 24.28 ? O2P FAD 599 A 1 HETATM 53 O O3P FAD . . . B 2 39.693 -1.805 12.4 1 25.03 ? O3P FAD 599 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #