data_3H52
#
_model_server_result.job_id            x6JZNrPcqCe8QmyqPNIW9Q 
_model_server_result.datetime_utc      '2024-10-12 18:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h52 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1}' 
#
_entry.id    3H52 
#
_exptl.entry_id    3H52 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.594 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3H52 
_cell.length_a            99.53 
_cell.length_b            99.53 
_cell.length_c            252.43 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H52 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,G,K,L,O,P 1 1 
B,C,F,H,I,J,M,N,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C29 H35 N O2' 
_chem_comp.formula_weight    429.594 
_chem_comp.id                486 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RU-486;MIFEPRISTONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O30 C2 486 doub 1 n n 
C2 C1 486 sing 2 n n 
C2 C3 486 sing 3 n n 
C1 C6 486 sing 4 n n 
C1 HC1A 486 sing 5 n n 
C1 HC12 486 sing 6 n n 
C3 C4 486 doub 7 n n 
C3 HC3 486 sing 8 n n 
C4 C7 486 sing 9 n n 
C4 C5 486 sing 10 n n 
C7 C8 486 sing 11 n n 
C7 HC71 486 sing 12 n n 
C7 HC72 486 sing 13 n n 
C5 C6 486 sing 14 n n 
C5 C10 486 doub 15 n n 
C6 HC61 486 sing 16 n n 
C6 HC62 486 sing 17 n n 
C10 C14 486 sing 18 n n 
C10 C9 486 sing 19 n n 
C14 C18 486 sing 20 n n 
C14 C13 486 sing 21 n n 
C14 HC14 486 sing 22 n n 
C18 C22 486 doub 23 n y 
C18 C26 486 sing 24 n y 
C22 C23 486 sing 25 n y 
C22 HC22 486 sing 26 n n 
C23 C24 486 doub 27 n y 
C23 HC23 486 sing 28 n n 
C24 N27 486 sing 29 n n 
C24 C25 486 sing 30 n y 
N27 C29 486 sing 31 n n 
N27 C28 486 sing 32 n n 
C29 H291 486 sing 33 n n 
C29 H292 486 sing 34 n n 
C29 H293 486 sing 35 n n 
C28 H281 486 sing 36 n n 
C28 H282 486 sing 37 n n 
C28 H283 486 sing 38 n n 
C25 C26 486 doub 39 n y 
C25 HC25 486 sing 40 n n 
C26 HC26 486 sing 41 n n 
C13 C12 486 sing 42 n n 
C13 H131 486 sing 43 n n 
C13 H132 486 sing 44 n n 
C12 C19 486 sing 45 n n 
C12 C17 486 sing 46 n n 
C12 C11 486 sing 47 n n 
C19 H191 486 sing 48 n n 
C19 H192 486 sing 49 n n 
C19 H193 486 sing 50 n n 
C17 C31 486 sing 51 n n 
C17 O3 486 sing 52 n n 
C17 C16 486 sing 53 n n 
C31 C30 486 trip 54 n n 
C30 C32 486 sing 55 n n 
C32 H321 486 sing 56 n n 
C32 H322 486 sing 57 n n 
C32 H323 486 sing 58 n n 
O3 HO3 486 sing 59 n n 
C16 C15 486 sing 60 n n 
C16 H161 486 sing 61 n n 
C16 H162 486 sing 62 n n 
C15 C11 486 sing 63 n n 
C15 H151 486 sing 64 n n 
C15 H152 486 sing 65 n n 
C11 C9 486 sing 66 n n 
C11 HC11 486 sing 67 n n 
C9 C8 486 sing 68 n n 
C9 HC9 486 sing 69 n n 
C8 HC81 486 sing 70 n n 
C8 HC82 486 sing 71 n n 
#
_atom_sites.entry_id                     3H52 
_atom_sites.fract_transf_matrix[1][1]    0.010047 
_atom_sites.fract_transf_matrix[1][2]    0.005801 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003961 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 486 A 1 3 3 486 LIG . 
H 3 486 B 1 1 1 486 LIG . 
I 4 GOL B 1 778 1 GOL GOL . 
J 3 486 C 1 4 4 486 LIG . 
K 3 486 D 1 2 2 486 LIG . 
L 5 HOH A 1 4 4 HOH HOH . 
L 5 HOH A 2 7 7 HOH HOH . 
L 5 HOH A 3 14 14 HOH HOH . 
L 5 HOH A 4 17 17 HOH HOH . 
L 5 HOH A 5 23 23 HOH HOH . 
L 5 HOH A 6 24 24 HOH HOH . 
L 5 HOH A 7 25 25 HOH HOH . 
L 5 HOH A 8 41 41 HOH HOH . 
M 5 HOH B 1 5 5 HOH HOH . 
M 5 HOH B 2 22 22 HOH HOH . 
M 5 HOH B 3 27 27 HOH HOH . 
M 5 HOH B 4 40 40 HOH HOH . 
N 5 HOH C 1 21 21 HOH HOH . 
O 5 HOH D 1 1 1 HOH HOH . 
O 5 HOH D 2 3 3 HOH HOH . 
O 5 HOH D 3 11 11 HOH HOH . 
O 5 HOH D 4 20 20 HOH HOH . 
O 5 HOH D 5 26 26 HOH HOH . 
O 5 HOH D 6 29 29 HOH HOH . 
O 5 HOH D 7 31 31 HOH HOH . 
O 5 HOH D 8 34 34 HOH HOH . 
O 5 HOH D 9 37 37 HOH HOH . 
O 5 HOH D 10 42 42 HOH HOH . 
O 5 HOH D 11 778 2 HOH HOH . 
P 5 HOH N 1 10 10 HOH HOH . 
P 5 HOH N 2 13 13 HOH HOH . 
Q 5 HOH M 1 8 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O30 486 . . . H 3 -18.011 34.338 -3.807 1 45.19 ? O30 486 1 B 1 
HETATM 2 C C2 486 . . . H 3 -18.51 33.335 -4.286 1 43.39 ? C2 486 1 B 1 
HETATM 3 C C1 486 . . . H 3 -19.984 33.341 -4.606 1 43.1 ? C1 486 1 B 1 
HETATM 4 C C3 486 . . . H 3 -17.688 32.22 -4.504 1 41.8 ? C3 486 1 B 1 
HETATM 5 C C4 486 . . . H 3 -18.196 31.088 -5.016 1 40.91 ? C4 486 1 B 1 
HETATM 6 C C7 486 . . . H 3 -17.329 29.889 -5.281 1 39.99 ? C7 486 1 B 1 
HETATM 7 C C5 486 . . . H 3 -19.608 30.994 -5.383 1 41.19 ? C5 486 1 B 1 
HETATM 8 C C6 486 . . . H 3 -20.394 32.264 -5.616 1 42.05 ? C6 486 1 B 1 
HETATM 9 C C10 486 . . . H 3 -20.187 29.814 -5.556 1 40.21 ? C10 486 1 B 1 
HETATM 10 C C14 486 . . . H 3 -21.643 29.8 -5.97 1 39.46 ? C14 486 1 B 1 
HETATM 11 C C18 486 . . . H 3 -21.722 29.869 -7.482 1 39.07 ? C18 486 1 B 1 
HETATM 12 C C22 486 . . . H 3 -22.957 29.97 -8.104 1 38.82 ? C22 486 1 B 1 
HETATM 13 C C23 486 . . . H 3 -23.047 30.046 -9.485 1 36.67 ? C23 486 1 B 1 
HETATM 14 C C24 486 . . . H 3 -21.898 30.022 -10.262 1 34 ? C24 486 1 B 1 
HETATM 15 N N27 486 . . . H 3 -22.005 30.107 -11.647 1 32.18 ? N27 486 1 B 1 
HETATM 16 C C29 486 . . . H 3 -23.326 30.227 -12.28 1 29.62 ? C29 486 1 B 1 
HETATM 17 C C28 486 . . . H 3 -20.79 30.085 -12.454 1 30.98 ? C28 486 1 B 1 
HETATM 18 C C25 486 . . . H 3 -20.66 29.923 -9.653 1 35.01 ? C25 486 1 B 1 
HETATM 19 C C26 486 . . . H 3 -20.577 29.847 -8.268 1 37.41 ? C26 486 1 B 1 
HETATM 20 C C13 486 . . . H 3 -22.435 28.589 -5.447 1 40.03 ? C13 486 1 B 1 
HETATM 21 C C12 486 . . . H 3 -21.575 27.355 -5.269 1 40.37 ? C12 486 1 B 1 
HETATM 22 C C19 486 . . . H 3 -21.22 26.701 -6.599 1 39.46 ? C19 486 1 B 1 
HETATM 23 C C17 486 . . . H 3 -22.15 26.298 -4.351 1 42.36 ? C17 486 1 B 1 
HETATM 24 C C31 486 . . . H 3 -22.391 26.797 -2.981 1 43.15 ? C31 486 1 B 1 
HETATM 25 C C30 486 . . . H 3 -22.527 27.204 -1.878 1 44.19 ? C30 486 1 B 1 
HETATM 26 C C32 486 . . . H 3 -22.67 27.624 -0.463 1 43.72 ? C32 486 1 B 1 
HETATM 27 O O3 486 . . . H 3 -23.354 25.754 -4.905 1 43.51 ? O3 486 1 B 1 
HETATM 28 C C16 486 . . . H 3 -20.948 25.328 -4.341 1 42.52 ? C16 486 1 B 1 
HETATM 29 C C15 486 . . . H 3 -19.71 26.259 -4.249 1 40.89 ? C15 486 1 B 1 
HETATM 30 C C11 486 . . . H 3 -20.294 27.661 -4.469 1 40.32 ? C11 486 1 B 1 
HETATM 31 C C9 486 . . . H 3 -19.438 28.534 -5.355 1 40.89 ? C9 486 1 B 1 
HETATM 32 C C8 486 . . . H 3 -18.079 28.701 -4.704 1 40.92 ? C8 486 1 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           32 
#