data_3H52 # _model_server_result.job_id uIgZv24osUbnMlAb0prafg _model_server_result.datetime_utc '2024-10-12 18:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":778}' # _entry.id 3H52 # _exptl.entry_id 3H52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H52 _cell.length_a 99.53 _cell.length_b 99.53 _cell.length_c 252.43 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,K,L,O,P 1 1 B,C,F,H,I,J,M,N,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 200 n n C1 C2 GOL sing 201 n n C1 H11 GOL sing 202 n n C1 H12 GOL sing 203 n n O1 HO1 GOL sing 204 n n C2 O2 GOL sing 205 n n C2 C3 GOL sing 206 n n C2 H2 GOL sing 207 n n O2 HO2 GOL sing 208 n n C3 O3 GOL sing 209 n n C3 H31 GOL sing 210 n n C3 H32 GOL sing 211 n n O3 HO3 GOL sing 212 n n # _atom_sites.entry_id 3H52 _atom_sites.fract_transf_matrix[1][1] 0.010047 _atom_sites.fract_transf_matrix[1][2] 0.005801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 486 A 1 3 3 486 LIG . H 3 486 B 1 1 1 486 LIG . I 4 GOL B 1 778 1 GOL GOL . J 3 486 C 1 4 4 486 LIG . K 3 486 D 1 2 2 486 LIG . L 5 HOH A 1 4 4 HOH HOH . L 5 HOH A 2 7 7 HOH HOH . L 5 HOH A 3 14 14 HOH HOH . L 5 HOH A 4 17 17 HOH HOH . L 5 HOH A 5 23 23 HOH HOH . L 5 HOH A 6 24 24 HOH HOH . L 5 HOH A 7 25 25 HOH HOH . L 5 HOH A 8 41 41 HOH HOH . M 5 HOH B 1 5 5 HOH HOH . M 5 HOH B 2 22 22 HOH HOH . M 5 HOH B 3 27 27 HOH HOH . M 5 HOH B 4 40 40 HOH HOH . N 5 HOH C 1 21 21 HOH HOH . O 5 HOH D 1 1 1 HOH HOH . O 5 HOH D 2 3 3 HOH HOH . O 5 HOH D 3 11 11 HOH HOH . O 5 HOH D 4 20 20 HOH HOH . O 5 HOH D 5 26 26 HOH HOH . O 5 HOH D 6 29 29 HOH HOH . O 5 HOH D 7 31 31 HOH HOH . O 5 HOH D 8 34 34 HOH HOH . O 5 HOH D 9 37 37 HOH HOH . O 5 HOH D 10 42 42 HOH HOH . O 5 HOH D 11 778 2 HOH HOH . P 5 HOH N 1 10 10 HOH HOH . P 5 HOH N 2 13 13 HOH HOH . Q 5 HOH M 1 8 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -9.018 20.21 2.454 1 80.6 ? C1 GOL 778 B 1 HETATM 2 O O1 GOL . . . I 4 -8.188 20.088 1.319 1 80.12 ? O1 GOL 778 B 1 HETATM 3 C C2 GOL . . . I 4 -10.487 20.454 2.075 1 81.12 ? C2 GOL 778 B 1 HETATM 4 O O2 GOL . . . I 4 -10.645 21.035 0.786 1 80.39 ? O2 GOL 778 B 1 HETATM 5 C C3 GOL . . . I 4 -11.138 21.352 3.131 1 81.31 ? C3 GOL 778 B 1 HETATM 6 O O3 GOL . . . I 4 -11.21 20.716 4.392 1 81.56 ? O3 GOL 778 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #