data_3H5F # _model_server_result.job_id Oh564ee8gs1WJai2470Ebw _model_server_result.datetime_utc '2024-10-20 03:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":34}' # _entry.id 3H5F # _exptl.entry_id 3H5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.8 _cell.angle_gamma 90 _cell.entry_id 3H5F _cell.length_a 77.827 _cell.length_b 29.244 _cell.length_c 44.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C LYS 16 A LYS 15 1_555 A N LE1 17 A LE1 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale3 A C LE1 17 A LE1 16 1_555 A N GLN 18 A GLN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale4 A C GLY 30 A GLY 29 1_555 A N NH2 31 A NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? covale ? covale5 B C ACE 1 B ACE 0 1_555 B N GLU 2 B GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 B C LYS 16 B LYS 15 1_555 B N LE1 17 B LE1 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale7 B C LE1 17 B LE1 16 1_555 B N GLN 18 B GLN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale8 B C GLY 30 B GLY 29 1_555 B N NH2 31 B NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale9 C C ACE 1 C ACE 0 1_555 C N GLU 2 C GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 C C LYS 16 C LYS 15 1_555 C N LE1 17 C LE1 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 C C LE1 17 C LE1 16 1_555 C N GLN 18 C GLN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? covale ? covale12 C C GLY 30 C GLY 29 1_555 C N NH2 31 C NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? metalc ? metalc1 A OE2 GLU 25 A GLU 24 1_555 F ZN ZN . A ZN 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc2 A NE2 HIS 29 A HIS 28 1_555 E ZN ZN . A ZN 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 E ZN ZN . A ZN 32 1_555 L O HOH . A HOH 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 F ZN ZN . A ZN 33 1_555 L O HOH . A HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc5 C NE2 HIS 29 C HIS 28 1_555 I ZN ZN . C ZN 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 7 n n C OXT ACT sing 8 n n C CH3 ACT sing 9 n n CH3 H1 ACT sing 10 n n CH3 H2 ACT sing 11 n n CH3 H3 ACT sing 12 n n # _atom_sites.entry_id 3H5F _atom_sites.fract_transf_matrix[1][1] 0.012849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 31 2 CL CL . E 3 ZN A 1 32 1 ZN ZN . F 3 ZN A 1 33 4 ZN ZN . G 2 CL B 1 31 1 CL CL . H 2 CL C 1 31 3 CL CL . I 3 ZN C 1 32 2 ZN ZN . J 3 ZN C 1 33 3 ZN ZN . K 4 ACT C 1 34 1 ACT ACT . L 5 HOH A 1 34 34 HOH HOH . L 5 HOH A 2 35 1 HOH HOH . L 5 HOH A 3 36 36 HOH HOH . L 5 HOH A 4 37 4 HOH HOH . L 5 HOH A 5 38 16 HOH HOH . L 5 HOH A 6 39 39 HOH HOH . L 5 HOH A 7 40 17 HOH HOH . L 5 HOH A 8 41 19 HOH HOH . L 5 HOH A 9 42 20 HOH HOH . L 5 HOH A 10 43 23 HOH HOH . L 5 HOH A 11 44 5 HOH HOH . L 5 HOH A 12 45 45 HOH HOH . L 5 HOH A 13 47 28 HOH HOH . L 5 HOH A 14 48 29 HOH HOH . L 5 HOH A 15 49 31 HOH HOH . L 5 HOH A 16 50 50 HOH HOH . L 5 HOH A 17 53 53 HOH HOH . L 5 HOH A 18 54 54 HOH HOH . L 5 HOH A 19 56 56 HOH HOH . L 5 HOH A 20 57 57 HOH HOH . L 5 HOH A 21 68 68 HOH HOH . M 5 HOH B 1 32 2 HOH HOH . M 5 HOH B 2 33 7 HOH HOH . M 5 HOH B 3 34 8 HOH HOH . M 5 HOH B 4 35 35 HOH HOH . M 5 HOH B 5 36 13 HOH HOH . M 5 HOH B 6 37 14 HOH HOH . M 5 HOH B 7 38 21 HOH HOH . M 5 HOH B 8 39 24 HOH HOH . M 5 HOH B 9 41 25 HOH HOH . M 5 HOH B 10 42 27 HOH HOH . M 5 HOH B 11 44 44 HOH HOH . M 5 HOH B 12 47 47 HOH HOH . M 5 HOH B 13 48 48 HOH HOH . M 5 HOH B 14 52 52 HOH HOH . M 5 HOH B 15 55 55 HOH HOH . M 5 HOH B 16 61 61 HOH HOH . M 5 HOH B 17 62 62 HOH HOH . M 5 HOH B 18 64 64 HOH HOH . M 5 HOH B 19 67 67 HOH HOH . M 5 HOH B 20 69 69 HOH HOH . M 5 HOH B 21 70 70 HOH HOH . N 5 HOH C 1 35 3 HOH HOH . N 5 HOH C 2 37 37 HOH HOH . N 5 HOH C 3 38 38 HOH HOH . N 5 HOH C 4 39 6 HOH HOH . N 5 HOH C 5 40 40 HOH HOH . N 5 HOH C 6 41 41 HOH HOH . N 5 HOH C 7 42 10 HOH HOH . N 5 HOH C 8 43 43 HOH HOH . N 5 HOH C 9 44 26 HOH HOH . N 5 HOH C 10 45 12 HOH HOH . N 5 HOH C 11 46 46 HOH HOH . N 5 HOH C 12 47 18 HOH HOH . N 5 HOH C 13 48 22 HOH HOH . N 5 HOH C 14 49 49 HOH HOH . N 5 HOH C 15 50 9 HOH HOH . N 5 HOH C 16 51 51 HOH HOH . N 5 HOH C 17 52 30 HOH HOH . N 5 HOH C 18 53 32 HOH HOH . N 5 HOH C 19 54 33 HOH HOH . N 5 HOH C 20 55 11 HOH HOH . N 5 HOH C 21 56 15 HOH HOH . N 5 HOH C 22 58 58 HOH HOH . N 5 HOH C 23 59 59 HOH HOH . N 5 HOH C 24 60 60 HOH HOH . N 5 HOH C 25 63 63 HOH HOH . N 5 HOH C 26 65 65 HOH HOH . N 5 HOH C 27 66 66 HOH HOH . N 5 HOH C 28 71 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . K 4 20.356 -5.451 11.77 1 57.66 ? C ACT 34 C 1 HETATM 2 O O ACT . . . K 4 21.303 -6.188 12.14 1 57.01 ? O ACT 34 C 1 HETATM 3 O OXT ACT . . . K 4 20.167 -5.397 10.537 1 57.08 ? OXT ACT 34 C 1 HETATM 4 C CH3 ACT . . . K 4 19.488 -4.69 12.739 1 57.24 ? CH3 ACT 34 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #