data_3H6G
#
_model_server_result.job_id            '_gq1szJVvprEZg4rP6KSNA' 
_model_server_result.datetime_utc      '2024-12-27 01:42:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3h6g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":398}' 
#
_entry.id    3H6G 
#
_exptl.entry_id    3H6G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3H6G 
_cell.length_a            172.074 
_cell.length_b            172.074 
_cell.length_c            111.547 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3H6G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 316 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 65 B CYS 65 1_555 B SG CYS 316 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 A ND2 ASN 36 A ASN 36 1_555 C C1 NAG . A NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 D C1 NAG . A NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale3 A ND2 ASN 244 A ASN 244 1_555 E C1 NAG . A NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 347 A ASN 347 1_555 F C1 NAG . A NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 A ND2 ASN 381 A ASN 381 1_555 G C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale6 B ND2 ASN 36 B ASN 36 1_555 J C1 NAG . B NAG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 B ND2 ASN 244 B ASN 244 1_555 K C1 NAG . B NAG 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 B ND2 ASN 347 B ASN 347 1_555 L C1 NAG . B NAG 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
metalc ? metalc1 A O ILE 33 A ILE 33 1_555 I CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc2 A O ASN 34 A ASN 34 1_555 I CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc3 A O ASN 36 A ASN 36 1_555 I CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc4 A O LEU 39 A LEU 39 1_555 I CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc5 A O LEU 40 A LEU 40 1_555 I CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc6 B O ILE 33 B ILE 33 1_555 N CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc7 B O ASN 34 B ASN 34 1_555 N CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? 
metalc ? metalc8 B O ASN 36 B ASN 36 1_555 N CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc9 B O LEU 39 B LEU 39 1_555 N CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc10 B O LEU 40 B LEU 40 1_555 N CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3H6G 
_atom_sites.fract_transf_matrix[1][1]    0.005811 
_atom_sites.fract_transf_matrix[1][2]    0.003355 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00671 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 396 1 NAG NAG . 
D 2 NAG A 1 397 2 NAG NAG . 
E 2 NAG A 1 398 3 NAG NAG . 
F 2 NAG A 1 399 4 NAG NAG . 
G 2 NAG A 1 400 5 NAG NAG . 
H 3 TLA A 1 401 1 TLA TLA . 
I 4 CA A 1 402 1 CA CA . 
J 2 NAG B 1 396 6 NAG NAG . 
K 2 NAG B 1 397 8 NAG NAG . 
L 2 NAG B 1 398 9 NAG NAG . 
M 3 TLA B 1 399 2 TLA TLA . 
N 4 CA B 1 400 2 CA CA . 
O 5 HOH A 1 403 2 HOH HOH . 
O 5 HOH A 2 404 3 HOH HOH . 
O 5 HOH A 3 405 5 HOH HOH . 
O 5 HOH A 4 406 10 HOH HOH . 
O 5 HOH A 5 407 11 HOH HOH . 
O 5 HOH A 6 408 12 HOH HOH . 
O 5 HOH A 7 409 13 HOH HOH . 
O 5 HOH A 8 410 16 HOH HOH . 
O 5 HOH A 9 411 17 HOH HOH . 
O 5 HOH A 10 412 18 HOH HOH . 
O 5 HOH A 11 413 19 HOH HOH . 
O 5 HOH A 12 414 20 HOH HOH . 
O 5 HOH A 13 415 26 HOH HOH . 
O 5 HOH A 14 416 31 HOH HOH . 
O 5 HOH A 15 417 33 HOH HOH . 
O 5 HOH A 16 418 34 HOH HOH . 
O 5 HOH A 17 419 36 HOH HOH . 
O 5 HOH A 18 420 37 HOH HOH . 
O 5 HOH A 19 421 39 HOH HOH . 
O 5 HOH A 20 422 42 HOH HOH . 
O 5 HOH A 21 423 43 HOH HOH . 
O 5 HOH A 22 424 44 HOH HOH . 
P 5 HOH B 1 401 1 HOH HOH . 
P 5 HOH B 2 402 4 HOH HOH . 
P 5 HOH B 3 403 6 HOH HOH . 
P 5 HOH B 4 404 7 HOH HOH . 
P 5 HOH B 5 405 8 HOH HOH . 
P 5 HOH B 6 406 9 HOH HOH . 
P 5 HOH B 7 407 14 HOH HOH . 
P 5 HOH B 8 408 15 HOH HOH . 
P 5 HOH B 9 409 21 HOH HOH . 
P 5 HOH B 10 410 22 HOH HOH . 
P 5 HOH B 11 411 23 HOH HOH . 
P 5 HOH B 12 412 24 HOH HOH . 
P 5 HOH B 13 413 25 HOH HOH . 
P 5 HOH B 14 414 27 HOH HOH . 
P 5 HOH B 15 415 28 HOH HOH . 
P 5 HOH B 16 416 29 HOH HOH . 
P 5 HOH B 17 417 30 HOH HOH . 
P 5 HOH B 18 418 32 HOH HOH . 
P 5 HOH B 19 419 35 HOH HOH . 
P 5 HOH B 20 420 38 HOH HOH . 
P 5 HOH B 21 421 40 HOH HOH . 
P 5 HOH B 22 422 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 2 -67.118 17.922 -16.366 1 125.66 ? C1 NAG 398 B 1 
HETATM 2 C C2 NAG . . . L 2 -66.199 17.311 -17.425 1 128.5 ? C2 NAG 398 B 1 
HETATM 3 C C3 NAG . . . L 2 -65.592 16.023 -16.895 1 125.05 ? C3 NAG 398 B 1 
HETATM 4 C C4 NAG . . . L 2 -65.116 16.218 -15.463 1 125.19 ? C4 NAG 398 B 1 
HETATM 5 C C5 NAG . . . L 2 -66.324 16.531 -14.586 1 127.6 ? C5 NAG 398 B 1 
HETATM 6 C C6 NAG . . . L 2 -66.048 17.505 -13.435 1 112.84 ? C6 NAG 398 B 1 
HETATM 7 C C7 NAG . . . L 2 -66.527 17.407 -19.849 1 179.8 ? C7 NAG 398 B 1 
HETATM 8 C C8 NAG . . . L 2 -67.468 17.108 -20.981 1 213.04 ? C8 NAG 398 B 1 
HETATM 9 N N2 NAG . . . L 2 -66.914 16.984 -18.646 1 153.96 ? N2 NAG 398 B 1 
HETATM 10 O O3 NAG . . . L 2 -64.523 15.626 -17.722 1 123.49 ? O3 NAG 398 B 1 
HETATM 11 O O4 NAG . . . L 2 -64.524 15.021 -15.019 1 121.61 ? O4 NAG 398 B 1 
HETATM 12 O O5 NAG . . . L 2 -67.41 16.932 -15.405 1 141.36 ? O5 NAG 398 B 1 
HETATM 13 O O6 NAG . . . L 2 -65.329 18.65 -13.838 1 109.36 ? O6 NAG 398 B 1 
HETATM 14 O O7 NAG . . . L 2 -65.475 18.013 -20.054 1 157 ? O7 NAG 398 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#