data_3H6K # _model_server_result.job_id BnijZM8yIwKQj9X-wylNWg _model_server_result.datetime_utc '2024-11-15 04:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3H6K # _exptl.entry_id 3H6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.41 _cell.angle_gamma 90 _cell.entry_id 3H6K _cell.length_a 56.198 _cell.length_b 152.007 _cell.length_c 74.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 288 n n PA O2A NAP sing 289 n n PA O5B NAP sing 290 n n PA O3 NAP sing 291 n n O2A HOA2 NAP sing 292 n n O5B C5B NAP sing 293 n n C5B C4B NAP sing 294 n n C5B H51A NAP sing 295 n n C5B H52A NAP sing 296 n n C4B O4B NAP sing 297 n n C4B C3B NAP sing 298 n n C4B H4B NAP sing 299 n n O4B C1B NAP sing 300 n n C3B O3B NAP sing 301 n n C3B C2B NAP sing 302 n n C3B H3B NAP sing 303 n n O3B HO3A NAP sing 304 n n C2B O2B NAP sing 305 n n C2B C1B NAP sing 306 n n C2B H2B NAP sing 307 n n O2B P2B NAP sing 308 n n C1B N9A NAP sing 309 n n C1B H1B NAP sing 310 n n N9A C8A NAP sing 311 n y N9A C4A NAP sing 312 n y C8A N7A NAP doub 313 n y C8A H8A NAP sing 314 n n N7A C5A NAP sing 315 n y C5A C6A NAP sing 316 n y C5A C4A NAP doub 317 n y C6A N6A NAP sing 318 n n C6A N1A NAP doub 319 n y N6A H61A NAP sing 320 n n N6A H62A NAP sing 321 n n N1A C2A NAP sing 322 n y C2A N3A NAP doub 323 n y C2A H2A NAP sing 324 n n N3A C4A NAP sing 325 n y O3 PN NAP sing 326 n n PN O1N NAP doub 327 n n PN O2N NAP sing 328 n n PN O5D NAP sing 329 n n O5D C5D NAP sing 330 n n C5D C4D NAP sing 331 n n C5D H51N NAP sing 332 n n C5D H52N NAP sing 333 n n C4D O4D NAP sing 334 n n C4D C3D NAP sing 335 n n C4D H4D NAP sing 336 n n O4D C1D NAP sing 337 n n C3D O3D NAP sing 338 n n C3D C2D NAP sing 339 n n C3D H3D NAP sing 340 n n O3D HO3N NAP sing 341 n n C2D O2D NAP sing 342 n n C2D C1D NAP sing 343 n n C2D H2D NAP sing 344 n n O2D HO2N NAP sing 345 n n C1D N1N NAP sing 346 n n C1D H1D NAP sing 347 n n N1N C2N NAP sing 348 n y N1N C6N NAP doub 349 n y C2N C3N NAP doub 350 n y C2N H2N NAP sing 351 n n C3N C7N NAP sing 352 n n C3N C4N NAP sing 353 n y C7N O7N NAP doub 354 n n C7N N7N NAP sing 355 n n N7N H71N NAP sing 356 n n N7N H72N NAP sing 357 n n C4N C5N NAP doub 358 n y C4N H4N NAP sing 359 n n C5N C6N NAP sing 360 n y C5N H5N NAP sing 361 n n C6N H6N NAP sing 362 n n P2B O1X NAP doub 363 n n P2B O2X NAP sing 364 n n P2B O3X NAP sing 365 n n O2X HOP2 NAP sing 366 n n O3X HOP3 NAP sing 367 n n # _atom_sites.entry_id 3H6K _atom_sites.fract_transf_matrix[1][1] 0.017794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 1 1 NAP NAP . F 3 33T A 1 293 1 33T 33T . G 2 NAP B 1 1 1 NAP NAP . H 3 33T B 1 293 1 33T 33T . I 2 NAP C 1 1 1 NAP NAP . J 3 33T C 1 293 1 33T 33T . K 2 NAP D 1 1 1 NAP NAP . L 3 33T D 1 293 1 33T 33T . M 4 HOH A 1 294 10 HOH HOH . M 4 HOH A 2 295 19 HOH HOH . M 4 HOH A 3 296 26 HOH HOH . M 4 HOH A 4 297 33 HOH HOH . M 4 HOH A 5 298 35 HOH HOH . M 4 HOH A 6 299 47 HOH HOH . M 4 HOH A 7 300 49 HOH HOH . M 4 HOH A 8 301 53 HOH HOH . M 4 HOH A 9 302 57 HOH HOH . M 4 HOH A 10 303 58 HOH HOH . M 4 HOH A 11 304 63 HOH HOH . M 4 HOH A 12 305 64 HOH HOH . M 4 HOH A 13 306 70 HOH HOH . M 4 HOH A 14 307 74 HOH HOH . M 4 HOH A 15 308 82 HOH HOH . M 4 HOH A 16 309 84 HOH HOH . M 4 HOH A 17 310 87 HOH HOH . M 4 HOH A 18 311 93 HOH HOH . M 4 HOH A 19 312 110 HOH HOH . M 4 HOH A 20 313 119 HOH HOH . M 4 HOH A 21 314 120 HOH HOH . M 4 HOH A 22 315 132 HOH HOH . M 4 HOH A 23 316 138 HOH HOH . M 4 HOH A 24 317 143 HOH HOH . M 4 HOH A 25 318 149 HOH HOH . M 4 HOH A 26 319 174 HOH HOH . M 4 HOH A 27 320 188 HOH HOH . M 4 HOH A 28 321 195 HOH HOH . M 4 HOH A 29 322 196 HOH HOH . M 4 HOH A 30 323 205 HOH HOH . M 4 HOH A 31 324 223 HOH HOH . M 4 HOH A 32 325 224 HOH HOH . M 4 HOH A 33 326 228 HOH HOH . M 4 HOH A 34 327 233 HOH HOH . M 4 HOH A 35 328 247 HOH HOH . M 4 HOH A 36 329 248 HOH HOH . M 4 HOH A 37 330 255 HOH HOH . N 4 HOH B 1 294 18 HOH HOH . N 4 HOH B 2 295 23 HOH HOH . N 4 HOH B 3 296 37 HOH HOH . N 4 HOH B 4 297 56 HOH HOH . N 4 HOH B 5 298 59 HOH HOH . N 4 HOH B 6 299 67 HOH HOH . N 4 HOH B 7 300 71 HOH HOH . N 4 HOH B 8 301 72 HOH HOH . N 4 HOH B 9 302 75 HOH HOH . N 4 HOH B 10 303 77 HOH HOH . N 4 HOH B 11 304 106 HOH HOH . N 4 HOH B 12 305 112 HOH HOH . N 4 HOH B 13 306 114 HOH HOH . N 4 HOH B 14 307 133 HOH HOH . N 4 HOH B 15 308 137 HOH HOH . N 4 HOH B 16 309 152 HOH HOH . N 4 HOH B 17 310 153 HOH HOH . N 4 HOH B 18 311 160 HOH HOH . N 4 HOH B 19 312 161 HOH HOH . N 4 HOH B 20 313 163 HOH HOH . N 4 HOH B 21 314 164 HOH HOH . N 4 HOH B 22 315 173 HOH HOH . N 4 HOH B 23 316 198 HOH HOH . N 4 HOH B 24 317 200 HOH HOH . N 4 HOH B 25 318 203 HOH HOH . N 4 HOH B 26 319 211 HOH HOH . N 4 HOH B 27 320 215 HOH HOH . N 4 HOH B 28 321 217 HOH HOH . N 4 HOH B 29 322 225 HOH HOH . N 4 HOH B 30 323 237 HOH HOH . N 4 HOH B 31 324 244 HOH HOH . N 4 HOH B 32 325 256 HOH HOH . O 4 HOH C 1 294 12 HOH HOH . O 4 HOH C 2 295 13 HOH HOH . O 4 HOH C 3 296 15 HOH HOH . O 4 HOH C 4 297 28 HOH HOH . O 4 HOH C 5 298 34 HOH HOH . O 4 HOH C 6 299 38 HOH HOH . O 4 HOH C 7 300 40 HOH HOH . O 4 HOH C 8 301 42 HOH HOH . O 4 HOH C 9 302 44 HOH HOH . O 4 HOH C 10 303 62 HOH HOH . O 4 HOH C 11 304 65 HOH HOH . O 4 HOH C 12 305 73 HOH HOH . O 4 HOH C 13 306 76 HOH HOH . O 4 HOH C 14 307 81 HOH HOH . O 4 HOH C 15 308 88 HOH HOH . O 4 HOH C 16 309 97 HOH HOH . O 4 HOH C 17 310 98 HOH HOH . O 4 HOH C 18 311 100 HOH HOH . O 4 HOH C 19 312 103 HOH HOH . O 4 HOH C 20 313 105 HOH HOH . O 4 HOH C 21 314 107 HOH HOH . O 4 HOH C 22 315 111 HOH HOH . O 4 HOH C 23 316 117 HOH HOH . O 4 HOH C 24 317 121 HOH HOH . O 4 HOH C 25 318 129 HOH HOH . O 4 HOH C 26 319 130 HOH HOH . O 4 HOH C 27 320 131 HOH HOH . O 4 HOH C 28 321 135 HOH HOH . O 4 HOH C 29 322 136 HOH HOH . O 4 HOH C 30 323 141 HOH HOH . O 4 HOH C 31 324 155 HOH HOH . O 4 HOH C 32 325 157 HOH HOH . O 4 HOH C 33 326 167 HOH HOH . O 4 HOH C 34 327 178 HOH HOH . O 4 HOH C 35 328 181 HOH HOH . O 4 HOH C 36 329 184 HOH HOH . O 4 HOH C 37 330 185 HOH HOH . O 4 HOH C 38 331 186 HOH HOH . O 4 HOH C 39 332 189 HOH HOH . O 4 HOH C 40 333 206 HOH HOH . O 4 HOH C 41 334 210 HOH HOH . O 4 HOH C 42 335 213 HOH HOH . O 4 HOH C 43 336 214 HOH HOH . O 4 HOH C 44 337 219 HOH HOH . O 4 HOH C 45 338 231 HOH HOH . O 4 HOH C 46 339 232 HOH HOH . O 4 HOH C 47 340 238 HOH HOH . O 4 HOH C 48 341 241 HOH HOH . O 4 HOH C 49 342 245 HOH HOH . O 4 HOH C 50 343 251 HOH HOH . O 4 HOH C 51 344 252 HOH HOH . O 4 HOH C 52 345 253 HOH HOH . O 4 HOH C 53 346 257 HOH HOH . O 4 HOH C 54 347 260 HOH HOH . P 4 HOH D 1 294 27 HOH HOH . P 4 HOH D 2 295 36 HOH HOH . P 4 HOH D 3 296 39 HOH HOH . P 4 HOH D 4 297 45 HOH HOH . P 4 HOH D 5 298 48 HOH HOH . P 4 HOH D 6 299 51 HOH HOH . P 4 HOH D 7 300 54 HOH HOH . P 4 HOH D 8 301 68 HOH HOH . P 4 HOH D 9 302 91 HOH HOH . P 4 HOH D 10 303 101 HOH HOH . P 4 HOH D 11 304 108 HOH HOH . P 4 HOH D 12 305 118 HOH HOH . P 4 HOH D 13 306 127 HOH HOH . P 4 HOH D 14 307 139 HOH HOH . P 4 HOH D 15 308 144 HOH HOH . P 4 HOH D 16 309 146 HOH HOH . P 4 HOH D 17 310 148 HOH HOH . P 4 HOH D 18 311 156 HOH HOH . P 4 HOH D 19 312 169 HOH HOH . P 4 HOH D 20 313 182 HOH HOH . P 4 HOH D 21 314 226 HOH HOH . P 4 HOH D 22 315 229 HOH HOH . P 4 HOH D 23 316 249 HOH HOH . P 4 HOH D 24 317 254 HOH HOH . P 4 HOH D 25 318 258 HOH HOH . P 4 HOH D 26 319 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 10.36 -4.93 22.722 1 46.43 ? PA NAP 1 A 1 HETATM 2 O O1A NAP . . . E 2 11.412 -4.305 23.558 1 49.75 ? O1A NAP 1 A 1 HETATM 3 O O2A NAP . . . E 2 10.959 -5.628 21.562 1 36.36 ? O2A NAP 1 A 1 HETATM 4 O O5B NAP . . . E 2 9.475 -6.016 23.542 1 50.31 ? O5B NAP 1 A 1 HETATM 5 C C5B NAP . . . E 2 8.229 -5.73 24.151 1 58.71 ? C5B NAP 1 A 1 HETATM 6 C C4B NAP . . . E 2 7.942 -6.682 25.323 1 33.82 ? C4B NAP 1 A 1 HETATM 7 O O4B NAP . . . E 2 6.864 -7.556 25.044 1 40.69 ? O4B NAP 1 A 1 HETATM 8 C C3B NAP . . . E 2 9.113 -7.578 25.714 1 48.58 ? C3B NAP 1 A 1 HETATM 9 O O3B NAP . . . E 2 9.329 -7.382 27.096 1 27.99 ? O3B NAP 1 A 1 HETATM 10 C C2B NAP . . . E 2 8.68 -9.018 25.455 1 29.38 ? C2B NAP 1 A 1 HETATM 11 O O2B NAP . . . E 2 9.162 -9.874 26.472 1 36.2 ? O2B NAP 1 A 1 HETATM 12 C C1B NAP . . . E 2 7.169 -8.849 25.545 1 41.15 ? C1B NAP 1 A 1 HETATM 13 N N9A NAP . . . E 2 6.4 -9.93 24.89 1 32.98 ? N9A NAP 1 A 1 HETATM 14 C C8A NAP . . . E 2 6.626 -10.492 23.653 1 29.41 ? C8A NAP 1 A 1 HETATM 15 N N7A NAP . . . E 2 5.683 -11.438 23.44 1 27.41 ? N7A NAP 1 A 1 HETATM 16 C C5A NAP . . . E 2 4.856 -11.481 24.513 1 41.34 ? C5A NAP 1 A 1 HETATM 17 C C6A NAP . . . E 2 3.747 -12.256 24.81 1 30.14 ? C6A NAP 1 A 1 HETATM 18 N N6A NAP . . . E 2 3.317 -13.169 23.947 1 47.28 ? N6A NAP 1 A 1 HETATM 19 N N1A NAP . . . E 2 3.095 -12.082 26.013 1 44.32 ? N1A NAP 1 A 1 HETATM 20 C C2A NAP . . . E 2 3.546 -11.142 26.909 1 27.46 ? C2A NAP 1 A 1 HETATM 21 N N3A NAP . . . E 2 4.646 -10.373 26.606 1 18.86 ? N3A NAP 1 A 1 HETATM 22 C C4A NAP . . . E 2 5.301 -10.55 25.436 1 21.11 ? C4A NAP 1 A 1 HETATM 23 O O3 NAP . . . E 2 9.335 -3.77 22.27 1 43.74 ? O3 NAP 1 A 1 HETATM 24 P PN NAP . . . E 2 9.52 -2.171 22.141 1 41.54 ? PN NAP 1 A 1 HETATM 25 O O1N NAP . . . E 2 10.251 -1.891 20.885 1 32.01 ? O1N NAP 1 A 1 HETATM 26 O O2N NAP . . . E 2 10.042 -1.641 23.425 1 56.16 ? O2N NAP 1 A 1 HETATM 27 O O5D NAP . . . E 2 7.986 -1.695 21.982 1 37.57 ? O5D NAP 1 A 1 HETATM 28 C C5D NAP . . . E 2 7.203 -1.489 23.141 1 43.46 ? C5D NAP 1 A 1 HETATM 29 C C4D NAP . . . E 2 5.914 -0.782 22.761 1 24.34 ? C4D NAP 1 A 1 HETATM 30 O O4D NAP . . . E 2 6.237 0.369 21.998 1 39.01 ? O4D NAP 1 A 1 HETATM 31 C C3D NAP . . . E 2 5.057 -1.657 21.867 1 44.15 ? C3D NAP 1 A 1 HETATM 32 O O3D NAP . . . E 2 3.701 -1.531 22.232 1 23.52 ? O3D NAP 1 A 1 HETATM 33 C C2D NAP . . . E 2 5.22 -1.048 20.494 1 38.45 ? C2D NAP 1 A 1 HETATM 34 O O2D NAP . . . E 2 4.017 -1.219 19.798 1 36.97 ? O2D NAP 1 A 1 HETATM 35 C C1D NAP . . . E 2 5.489 0.422 20.793 1 37.39 ? C1D NAP 1 A 1 HETATM 36 N N1N NAP . . . E 2 6.263 1.024 19.687 1 39.68 ? N1N NAP 1 A 1 HETATM 37 C C2N NAP . . . E 2 7.613 0.845 19.623 1 46.36 ? C2N NAP 1 A 1 HETATM 38 C C3N NAP . . . E 2 8.353 1.4 18.587 1 34.94 ? C3N NAP 1 A 1 HETATM 39 C C7N NAP . . . E 2 9.836 1.182 18.522 1 57.19 ? C7N NAP 1 A 1 HETATM 40 O O7N NAP . . . E 2 10.527 1.573 17.361 1 36.68 ? O7N NAP 1 A 1 HETATM 41 N N7N NAP . . . E 2 10.471 0.612 19.545 1 40.06 ? N7N NAP 1 A 1 HETATM 42 C C4N NAP . . . E 2 7.727 2.162 17.611 1 32.86 ? C4N NAP 1 A 1 HETATM 43 C C5N NAP . . . E 2 6.354 2.346 17.685 1 35.31 ? C5N NAP 1 A 1 HETATM 44 C C6N NAP . . . E 2 5.632 1.769 18.728 1 48.56 ? C6N NAP 1 A 1 HETATM 45 P P2B NAP . . . E 2 9.324 -11.471 26.259 1 36.46 ? P2B NAP 1 A 1 HETATM 46 O O1X NAP . . . E 2 9.989 -11.764 24.933 1 33.4 ? O1X NAP 1 A 1 HETATM 47 O O2X NAP . . . E 2 7.968 -12.127 26.303 1 50.15 ? O2X NAP 1 A 1 HETATM 48 O O3X NAP . . . E 2 10.171 -12.049 27.371 1 55.79 ? O3X NAP 1 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #