data_3H7M # _model_server_result.job_id YSW_348-kFAZJNlOVTDMeA _model_server_result.datetime_utc '2025-02-05 06:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3H7M # _exptl.entry_id 3H7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H7M _cell.length_a 122.92 _cell.length_b 122.92 _cell.length_c 81.692 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NA NA . A NA 1 1_555 A O ALA 84 A ALA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc2 B NA NA . A NA 1 1_555 A OD1 ASP 88 A ASP 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 B NA NA . A NA 1 1_555 A OE1 GLN 199 A GLN 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 B NA NA . A NA 1 1_555 C O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H7M _atom_sites.fract_transf_matrix[1][1] 0.008135 _atom_sites.fract_transf_matrix[1][2] 0.004697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1 1 NA NA . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 280 1 HOH HOH . C 3 HOH A 46 281 52 HOH HOH . C 3 HOH A 47 282 53 HOH HOH . C 3 HOH A 48 283 54 HOH HOH . C 3 HOH A 49 284 55 HOH HOH . C 3 HOH A 50 285 56 HOH HOH . C 3 HOH A 51 286 57 HOH HOH . C 3 HOH A 52 287 58 HOH HOH . C 3 HOH A 53 288 59 HOH HOH . C 3 HOH A 54 289 60 HOH HOH . C 3 HOH A 55 290 61 HOH HOH . C 3 HOH A 56 291 62 HOH HOH . C 3 HOH A 57 292 63 HOH HOH . C 3 HOH A 58 293 64 HOH HOH . C 3 HOH A 59 294 65 HOH HOH . C 3 HOH A 60 295 66 HOH HOH . C 3 HOH A 61 296 67 HOH HOH . C 3 HOH A 62 297 68 HOH HOH . C 3 HOH A 63 298 69 HOH HOH . C 3 HOH A 64 299 70 HOH HOH . C 3 HOH A 65 300 71 HOH HOH . C 3 HOH A 66 301 72 HOH HOH . C 3 HOH A 67 302 73 HOH HOH . C 3 HOH A 68 303 74 HOH HOH . C 3 HOH A 69 304 75 HOH HOH . C 3 HOH A 70 305 76 HOH HOH . C 3 HOH A 71 306 77 HOH HOH . C 3 HOH A 72 307 78 HOH HOH . C 3 HOH A 73 308 79 HOH HOH . C 3 HOH A 74 309 80 HOH HOH . C 3 HOH A 75 310 81 HOH HOH . C 3 HOH A 76 311 82 HOH HOH . C 3 HOH A 77 312 83 HOH HOH . C 3 HOH A 78 313 84 HOH HOH . C 3 HOH A 79 314 85 HOH HOH . C 3 HOH A 80 315 86 HOH HOH . C 3 HOH A 81 316 87 HOH HOH . C 3 HOH A 82 317 88 HOH HOH . C 3 HOH A 83 318 89 HOH HOH . C 3 HOH A 84 319 90 HOH HOH . C 3 HOH A 85 320 91 HOH HOH . C 3 HOH A 86 321 92 HOH HOH . C 3 HOH A 87 322 93 HOH HOH . C 3 HOH A 88 323 94 HOH HOH . C 3 HOH A 89 324 95 HOH HOH . C 3 HOH A 90 325 96 HOH HOH . C 3 HOH A 91 326 97 HOH HOH . C 3 HOH A 92 327 98 HOH HOH . C 3 HOH A 93 328 99 HOH HOH . C 3 HOH A 94 329 100 HOH HOH . C 3 HOH A 95 330 101 HOH HOH . C 3 HOH A 96 331 102 HOH HOH . C 3 HOH A 97 332 103 HOH HOH . C 3 HOH A 98 333 104 HOH HOH . C 3 HOH A 99 334 105 HOH HOH . C 3 HOH A 100 335 106 HOH HOH . C 3 HOH A 101 336 107 HOH HOH . C 3 HOH A 102 337 108 HOH HOH . C 3 HOH A 103 338 109 HOH HOH . C 3 HOH A 104 339 110 HOH HOH . C 3 HOH A 105 340 111 HOH HOH . C 3 HOH A 106 341 112 HOH HOH . C 3 HOH A 107 342 113 HOH HOH . C 3 HOH A 108 343 114 HOH HOH . C 3 HOH A 109 344 115 HOH HOH . C 3 HOH A 110 345 116 HOH HOH . C 3 HOH A 111 346 117 HOH HOH . C 3 HOH A 112 347 118 HOH HOH . C 3 HOH A 113 348 119 HOH HOH . C 3 HOH A 114 349 120 HOH HOH . C 3 HOH A 115 350 121 HOH HOH . C 3 HOH A 116 351 122 HOH HOH . C 3 HOH A 117 352 123 HOH HOH . C 3 HOH A 118 353 124 HOH HOH . C 3 HOH A 119 354 125 HOH HOH . C 3 HOH A 120 355 126 HOH HOH . C 3 HOH A 121 356 127 HOH HOH . C 3 HOH A 122 357 128 HOH HOH . C 3 HOH A 123 358 129 HOH HOH . C 3 HOH A 124 359 130 HOH HOH . C 3 HOH A 125 360 131 HOH HOH . C 3 HOH A 126 361 132 HOH HOH . C 3 HOH A 127 362 133 HOH HOH . C 3 HOH A 128 363 134 HOH HOH . C 3 HOH A 129 364 135 HOH HOH . C 3 HOH A 130 365 136 HOH HOH . C 3 HOH A 131 366 137 HOH HOH . C 3 HOH A 132 367 138 HOH HOH . C 3 HOH A 133 368 139 HOH HOH . C 3 HOH A 134 369 140 HOH HOH . C 3 HOH A 135 370 141 HOH HOH . C 3 HOH A 136 371 46 HOH HOH . C 3 HOH A 137 372 47 HOH HOH . C 3 HOH A 138 373 48 HOH HOH . C 3 HOH A 139 374 49 HOH HOH . C 3 HOH A 140 375 50 HOH HOH . C 3 HOH A 141 376 51 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.409 _atom_site.Cartn_y 67.277 _atom_site.Cartn_z 17.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #