data_3H80 # _model_server_result.job_id mxpYRfb1TWDKht_622nRyA _model_server_result.datetime_utc '2024-11-23 10:42:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":223}' # _entry.id 3H80 # _exptl.entry_id 3H80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H80 _cell.length_a 122.431 _cell.length_b 43.197 _cell.length_c 50.502 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 43.197 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 54 A ASN 36 1_555 B MG MG . A MG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OG SER 177 A SER 159 1_555 J MG MG . A MG 222 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 B MG MG . A MG 214 1_555 K O1A ANP . A ANP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 B MG MG . A MG 214 1_555 K O2G ANP . A ANP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc5 B MG MG . A MG 214 1_555 K O2B ANP . A ANP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 B MG MG . A MG 214 1_555 L O HOH . A HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 B MG MG . A MG 214 1_555 L O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3H80 _atom_sites.fract_transf_matrix[1][1] 0.008168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 214 1 MG MG . C 3 EDO A 1 215 1 EDO EDO . D 3 EDO A 1 216 1 EDO EDO . E 3 EDO A 1 217 1 EDO EDO . F 3 EDO A 1 218 1 EDO EDO . G 3 EDO A 1 219 1 EDO EDO . H 3 EDO A 1 220 1 EDO EDO . I 3 EDO A 1 221 1 EDO EDO . J 2 MG A 1 222 1 MG MG . K 4 ANP A 1 223 1 ANP ANP . L 5 HOH A 1 224 1 HOH HOH . L 5 HOH A 2 225 2 HOH HOH . L 5 HOH A 3 226 4 HOH HOH . L 5 HOH A 4 227 5 HOH HOH . L 5 HOH A 5 228 6 HOH HOH . L 5 HOH A 6 229 8 HOH HOH . L 5 HOH A 7 230 9 HOH HOH . L 5 HOH A 8 231 10 HOH HOH . L 5 HOH A 9 232 11 HOH HOH . L 5 HOH A 10 233 13 HOH HOH . L 5 HOH A 11 234 14 HOH HOH . L 5 HOH A 12 235 16 HOH HOH . L 5 HOH A 13 236 18 HOH HOH . L 5 HOH A 14 237 19 HOH HOH . L 5 HOH A 15 238 20 HOH HOH . L 5 HOH A 16 239 21 HOH HOH . L 5 HOH A 17 240 22 HOH HOH . L 5 HOH A 18 241 23 HOH HOH . L 5 HOH A 19 242 24 HOH HOH . L 5 HOH A 20 243 25 HOH HOH . L 5 HOH A 21 244 26 HOH HOH . L 5 HOH A 22 245 27 HOH HOH . L 5 HOH A 23 246 30 HOH HOH . L 5 HOH A 24 247 31 HOH HOH . L 5 HOH A 25 248 33 HOH HOH . L 5 HOH A 26 249 34 HOH HOH . L 5 HOH A 27 250 35 HOH HOH . L 5 HOH A 28 251 36 HOH HOH . L 5 HOH A 29 252 37 HOH HOH . L 5 HOH A 30 253 38 HOH HOH . L 5 HOH A 31 254 39 HOH HOH . L 5 HOH A 32 255 40 HOH HOH . L 5 HOH A 33 256 41 HOH HOH . L 5 HOH A 34 257 42 HOH HOH . L 5 HOH A 35 258 43 HOH HOH . L 5 HOH A 36 259 44 HOH HOH . L 5 HOH A 37 260 45 HOH HOH . L 5 HOH A 38 261 46 HOH HOH . L 5 HOH A 39 262 49 HOH HOH . L 5 HOH A 40 263 51 HOH HOH . L 5 HOH A 41 264 52 HOH HOH . L 5 HOH A 42 265 53 HOH HOH . L 5 HOH A 43 266 54 HOH HOH . L 5 HOH A 44 267 56 HOH HOH . L 5 HOH A 45 268 58 HOH HOH . L 5 HOH A 46 269 59 HOH HOH . L 5 HOH A 47 270 61 HOH HOH . L 5 HOH A 48 271 62 HOH HOH . L 5 HOH A 49 272 63 HOH HOH . L 5 HOH A 50 273 64 HOH HOH . L 5 HOH A 51 274 65 HOH HOH . L 5 HOH A 52 275 66 HOH HOH . L 5 HOH A 53 276 67 HOH HOH . L 5 HOH A 54 277 69 HOH HOH . L 5 HOH A 55 278 71 HOH HOH . L 5 HOH A 56 279 72 HOH HOH . L 5 HOH A 57 280 75 HOH HOH . L 5 HOH A 58 281 76 HOH HOH . L 5 HOH A 59 282 78 HOH HOH . L 5 HOH A 60 283 80 HOH HOH . L 5 HOH A 61 284 82 HOH HOH . L 5 HOH A 62 285 90 HOH HOH . L 5 HOH A 63 286 92 HOH HOH . L 5 HOH A 64 287 93 HOH HOH . L 5 HOH A 65 288 95 HOH HOH . L 5 HOH A 66 289 100 HOH HOH . L 5 HOH A 67 290 101 HOH HOH . L 5 HOH A 68 291 112 HOH HOH . L 5 HOH A 69 292 114 HOH HOH . L 5 HOH A 70 293 116 HOH HOH . L 5 HOH A 71 294 117 HOH HOH . L 5 HOH A 72 295 124 HOH HOH . L 5 HOH A 73 296 128 HOH HOH . L 5 HOH A 74 297 129 HOH HOH . L 5 HOH A 75 298 131 HOH HOH . L 5 HOH A 76 299 133 HOH HOH . L 5 HOH A 77 300 135 HOH HOH . L 5 HOH A 78 301 136 HOH HOH . L 5 HOH A 79 302 137 HOH HOH . L 5 HOH A 80 303 138 HOH HOH . L 5 HOH A 81 304 139 HOH HOH . L 5 HOH A 82 305 140 HOH HOH . L 5 HOH A 83 306 141 HOH HOH . L 5 HOH A 84 307 142 HOH HOH . L 5 HOH A 85 308 144 HOH HOH . L 5 HOH A 86 309 145 HOH HOH . L 5 HOH A 87 310 146 HOH HOH . L 5 HOH A 88 311 149 HOH HOH . L 5 HOH A 89 312 153 HOH HOH . L 5 HOH A 90 313 154 HOH HOH . L 5 HOH A 91 314 155 HOH HOH . L 5 HOH A 92 315 156 HOH HOH . L 5 HOH A 93 316 157 HOH HOH . L 5 HOH A 94 317 158 HOH HOH . L 5 HOH A 95 318 159 HOH HOH . L 5 HOH A 96 319 160 HOH HOH . L 5 HOH A 97 320 161 HOH HOH . L 5 HOH A 98 321 162 HOH HOH . L 5 HOH A 99 322 163 HOH HOH . L 5 HOH A 100 323 164 HOH HOH . L 5 HOH A 101 324 165 HOH HOH . L 5 HOH A 102 325 166 HOH HOH . L 5 HOH A 103 326 168 HOH HOH . L 5 HOH A 104 327 169 HOH HOH . L 5 HOH A 105 328 170 HOH HOH . L 5 HOH A 106 329 172 HOH HOH . L 5 HOH A 107 330 173 HOH HOH . L 5 HOH A 108 331 174 HOH HOH . L 5 HOH A 109 332 175 HOH HOH . L 5 HOH A 110 333 176 HOH HOH . L 5 HOH A 111 334 177 HOH HOH . L 5 HOH A 112 335 179 HOH HOH . L 5 HOH A 113 336 180 HOH HOH . L 5 HOH A 114 337 181 HOH HOH . L 5 HOH A 115 338 182 HOH HOH . L 5 HOH A 116 339 183 HOH HOH . L 5 HOH A 117 340 184 HOH HOH . L 5 HOH A 118 341 185 HOH HOH . L 5 HOH A 119 342 186 HOH HOH . L 5 HOH A 120 343 187 HOH HOH . L 5 HOH A 121 344 188 HOH HOH . L 5 HOH A 122 345 189 HOH HOH . L 5 HOH A 123 346 190 HOH HOH . L 5 HOH A 124 347 192 HOH HOH . L 5 HOH A 125 348 193 HOH HOH . L 5 HOH A 126 349 194 HOH HOH . L 5 HOH A 127 350 196 HOH HOH . L 5 HOH A 128 351 197 HOH HOH . L 5 HOH A 129 352 198 HOH HOH . L 5 HOH A 130 353 3 HOH HOH . L 5 HOH A 131 354 4 HOH HOH . L 5 HOH A 132 355 9 HOH HOH . L 5 HOH A 133 356 10 HOH HOH . L 5 HOH A 134 357 12 HOH HOH . L 5 HOH A 135 358 17 HOH HOH . L 5 HOH A 136 359 20 HOH HOH . L 5 HOH A 137 360 23 HOH HOH . L 5 HOH A 138 361 27 HOH HOH . L 5 HOH A 139 362 29 HOH HOH . L 5 HOH A 140 363 30 HOH HOH . L 5 HOH A 141 364 41 HOH HOH . L 5 HOH A 142 365 47 HOH HOH . L 5 HOH A 143 366 48 HOH HOH . L 5 HOH A 144 367 54 HOH HOH . L 5 HOH A 145 368 62 HOH HOH . L 5 HOH A 146 369 69 HOH HOH . L 5 HOH A 147 370 73 HOH HOH . L 5 HOH A 148 371 88 HOH HOH . L 5 HOH A 149 372 106 HOH HOH . L 5 HOH A 150 373 113 HOH HOH . L 5 HOH A 151 374 114 HOH HOH . L 5 HOH A 152 375 115 HOH HOH . L 5 HOH A 153 376 116 HOH HOH . L 5 HOH A 154 377 119 HOH HOH . L 5 HOH A 155 378 123 HOH HOH . L 5 HOH A 156 379 124 HOH HOH . L 5 HOH A 157 380 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . K 4 27.961 10.935 18.697 1 25.43 ? PG ANP 223 A 1 HETATM 2 O O1G ANP . . . K 4 28.325 12.27 18.087 1 25.88 ? O1G ANP 223 A 1 HETATM 3 O O2G ANP . . . K 4 26.908 10.286 17.834 1 26.31 ? O2G ANP 223 A 1 HETATM 4 O O3G ANP . . . K 4 29.186 10.081 18.956 1 23.7 ? O3G ANP 223 A 1 HETATM 5 P PB ANP . . . K 4 25.611 10.991 20.54 1 19.59 ? PB ANP 223 A 1 HETATM 6 O O1B ANP . . . K 4 25.413 11.358 21.987 1 19.29 ? O1B ANP 223 A 1 HETATM 7 O O2B ANP . . . K 4 25.199 9.587 20.062 1 16.75 ? O2B ANP 223 A 1 HETATM 8 N N3B ANP . . . K 4 27.321 11.185 20.277 1 19.63 ? N3B ANP 223 A 1 HETATM 9 P PA ANP . . . K 4 23.791 11.967 18.503 1 18.99 ? PA ANP 223 A 1 HETATM 10 O O1A ANP . . . K 4 23.927 10.729 17.67 1 18.24 ? O1A ANP 223 A 1 HETATM 11 O O2A ANP . . . K 4 23.7 13.279 17.81 1 19.37 ? O2A ANP 223 A 1 HETATM 12 O O3A ANP . . . K 4 24.864 12.114 19.683 1 17.45 ? O3A ANP 223 A 1 HETATM 13 O O5' ANP . . . K 4 22.491 11.751 19.424 1 17.78 ? O5' ANP 223 A 1 HETATM 14 C C5' ANP . . . K 4 21.961 12.857 20.17 1 18.39 ? C5' ANP 223 A 1 HETATM 15 C C4' ANP . . . K 4 21.343 12.331 21.475 1 20.84 ? C4' ANP 223 A 1 HETATM 16 O O4' ANP . . . K 4 20.053 11.859 21.103 1 18.3 ? O4' ANP 223 A 1 HETATM 17 C C3' ANP . . . K 4 22.016 11.089 22.08 1 20.77 ? C3' ANP 223 A 1 HETATM 18 O O3' ANP . . . K 4 22.996 11.373 23.08 1 24.14 ? O3' ANP 223 A 1 HETATM 19 C C2' ANP . . . K 4 20.879 10.33 22.704 1 23.27 ? C2' ANP 223 A 1 HETATM 20 O O2' ANP . . . K 4 20.607 10.878 24.005 1 26.24 ? O2' ANP 223 A 1 HETATM 21 C C1' ANP . . . K 4 19.693 10.701 21.841 1 19.08 ? C1' ANP 223 A 1 HETATM 22 N N9 ANP . . . K 4 19.368 9.598 20.898 1 18.52 ? N9 ANP 223 A 1 HETATM 23 C C8 ANP . . . K 4 19.621 9.55 19.576 1 16.76 ? C8 ANP 223 A 1 HETATM 24 N N7 ANP . . . K 4 19.135 8.391 19.035 1 18.11 ? N7 ANP 223 A 1 HETATM 25 C C5 ANP . . . K 4 18.561 7.678 20.03 1 16.96 ? C5 ANP 223 A 1 HETATM 26 C C6 ANP . . . K 4 17.865 6.361 20.165 1 17.57 ? C6 ANP 223 A 1 HETATM 27 N N6 ANP . . . K 4 17.713 5.568 19.087 1 15.6 ? N6 ANP 223 A 1 HETATM 28 N N1 ANP . . . K 4 17.395 6.014 21.398 1 17.24 ? N1 ANP 223 A 1 HETATM 29 C C2 ANP . . . K 4 17.554 6.812 22.475 1 16.12 ? C2 ANP 223 A 1 HETATM 30 N N3 ANP . . . K 4 18.186 8.005 22.421 1 16.09 ? N3 ANP 223 A 1 HETATM 31 C C4 ANP . . . K 4 18.7 8.479 21.257 1 17.01 ? C4 ANP 223 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #