data_3H8D # _model_server_result.job_id 2dLCOEgWdo43RnxFzHIJHQ _model_server_result.datetime_utc '2024-10-18 04:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1276}' # _entry.id 3H8D # _exptl.entry_id 3H8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.02 _cell.angle_gamma 90 _cell.entry_id 3H8D _cell.length_a 69.177 _cell.length_b 69.952 _cell.length_c 78.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,N,O,R,S 1 1 C,D,G,H,K,L,M,P,Q,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 3H8D _atom_sites.fract_transf_matrix[1][1] 0.014456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SCN A 1 3 3 SCN SCN . J 3 SCN B 1 2 2 SCN SCN . K 3 SCN C 1 1 1 SCN SCN . L 4 DTT C 1 1276 1 DTT DTT . M 5 CL H 1 4 4 CL CL . N 6 HOH A 1 1 1 HOH HOH . N 6 HOH A 2 4 4 HOH HOH . N 6 HOH A 3 5 5 HOH HOH . N 6 HOH A 4 6 6 HOH HOH . N 6 HOH A 5 8 8 HOH HOH . N 6 HOH A 6 21 21 HOH HOH . N 6 HOH A 7 29 29 HOH HOH . N 6 HOH A 8 38 38 HOH HOH . N 6 HOH A 9 41 41 HOH HOH . N 6 HOH A 10 47 47 HOH HOH . N 6 HOH A 11 49 49 HOH HOH . N 6 HOH A 12 53 53 HOH HOH . N 6 HOH A 13 57 57 HOH HOH . N 6 HOH A 14 62 62 HOH HOH . N 6 HOH A 15 65 65 HOH HOH . N 6 HOH A 16 66 66 HOH HOH . N 6 HOH A 17 70 70 HOH HOH . N 6 HOH A 18 72 72 HOH HOH . N 6 HOH A 19 76 76 HOH HOH . N 6 HOH A 20 79 79 HOH HOH . N 6 HOH A 21 91 91 HOH HOH . N 6 HOH A 22 98 98 HOH HOH . N 6 HOH A 23 101 101 HOH HOH . N 6 HOH A 24 102 102 HOH HOH . N 6 HOH A 25 113 113 HOH HOH . N 6 HOH A 26 117 117 HOH HOH . N 6 HOH A 27 122 122 HOH HOH . N 6 HOH A 28 127 127 HOH HOH . N 6 HOH A 29 130 130 HOH HOH . N 6 HOH A 30 133 133 HOH HOH . N 6 HOH A 31 138 138 HOH HOH . N 6 HOH A 32 150 150 HOH HOH . N 6 HOH A 33 152 152 HOH HOH . N 6 HOH A 34 153 153 HOH HOH . N 6 HOH A 35 156 156 HOH HOH . N 6 HOH A 36 159 159 HOH HOH . N 6 HOH A 37 171 171 HOH HOH . N 6 HOH A 38 172 172 HOH HOH . N 6 HOH A 39 173 173 HOH HOH . N 6 HOH A 40 184 184 HOH HOH . N 6 HOH A 41 199 199 HOH HOH . N 6 HOH A 42 212 212 HOH HOH . N 6 HOH A 43 216 216 HOH HOH . N 6 HOH A 44 218 218 HOH HOH . N 6 HOH A 45 220 220 HOH HOH . N 6 HOH A 46 223 223 HOH HOH . N 6 HOH A 47 228 228 HOH HOH . N 6 HOH A 48 239 239 HOH HOH . N 6 HOH A 49 244 244 HOH HOH . N 6 HOH A 50 258 258 HOH HOH . N 6 HOH A 51 260 260 HOH HOH . O 6 HOH B 1 3 3 HOH HOH . O 6 HOH B 2 10 10 HOH HOH . O 6 HOH B 3 12 12 HOH HOH . O 6 HOH B 4 15 15 HOH HOH . O 6 HOH B 5 19 19 HOH HOH . O 6 HOH B 6 24 24 HOH HOH . O 6 HOH B 7 31 31 HOH HOH . O 6 HOH B 8 33 33 HOH HOH . O 6 HOH B 9 35 35 HOH HOH . O 6 HOH B 10 50 50 HOH HOH . O 6 HOH B 11 51 51 HOH HOH . O 6 HOH B 12 55 55 HOH HOH . O 6 HOH B 13 63 63 HOH HOH . O 6 HOH B 14 75 75 HOH HOH . O 6 HOH B 15 80 80 HOH HOH . O 6 HOH B 16 81 81 HOH HOH . O 6 HOH B 17 86 86 HOH HOH . O 6 HOH B 18 94 94 HOH HOH . O 6 HOH B 19 97 97 HOH HOH . O 6 HOH B 20 99 99 HOH HOH . O 6 HOH B 21 115 115 HOH HOH . O 6 HOH B 22 119 119 HOH HOH . O 6 HOH B 23 128 128 HOH HOH . O 6 HOH B 24 131 131 HOH HOH . O 6 HOH B 25 132 132 HOH HOH . O 6 HOH B 26 136 136 HOH HOH . O 6 HOH B 27 142 142 HOH HOH . O 6 HOH B 28 144 144 HOH HOH . O 6 HOH B 29 145 145 HOH HOH . O 6 HOH B 30 149 149 HOH HOH . O 6 HOH B 31 155 155 HOH HOH . O 6 HOH B 32 157 157 HOH HOH . O 6 HOH B 33 163 163 HOH HOH . O 6 HOH B 34 176 176 HOH HOH . O 6 HOH B 35 177 177 HOH HOH . O 6 HOH B 36 181 181 HOH HOH . O 6 HOH B 37 183 183 HOH HOH . O 6 HOH B 38 190 190 HOH HOH . O 6 HOH B 39 195 195 HOH HOH . O 6 HOH B 40 197 197 HOH HOH . O 6 HOH B 41 198 198 HOH HOH . O 6 HOH B 42 206 206 HOH HOH . O 6 HOH B 43 207 207 HOH HOH . O 6 HOH B 44 209 209 HOH HOH . O 6 HOH B 45 221 221 HOH HOH . O 6 HOH B 46 226 226 HOH HOH . O 6 HOH B 47 230 230 HOH HOH . O 6 HOH B 48 240 240 HOH HOH . O 6 HOH B 49 241 241 HOH HOH . O 6 HOH B 50 245 245 HOH HOH . O 6 HOH B 51 252 252 HOH HOH . O 6 HOH B 52 257 257 HOH HOH . O 6 HOH B 53 259 259 HOH HOH . O 6 HOH B 54 261 261 HOH HOH . O 6 HOH B 55 262 262 HOH HOH . O 6 HOH B 56 263 263 HOH HOH . O 6 HOH B 57 1276 2 HOH HOH . P 6 HOH C 1 7 7 HOH HOH . P 6 HOH C 2 13 13 HOH HOH . P 6 HOH C 3 16 16 HOH HOH . P 6 HOH C 4 18 18 HOH HOH . P 6 HOH C 5 37 37 HOH HOH . P 6 HOH C 6 39 39 HOH HOH . P 6 HOH C 7 40 40 HOH HOH . P 6 HOH C 8 45 45 HOH HOH . P 6 HOH C 9 52 52 HOH HOH . P 6 HOH C 10 64 64 HOH HOH . P 6 HOH C 11 74 74 HOH HOH . P 6 HOH C 12 82 82 HOH HOH . P 6 HOH C 13 83 83 HOH HOH . P 6 HOH C 14 89 89 HOH HOH . P 6 HOH C 15 90 90 HOH HOH . P 6 HOH C 16 92 92 HOH HOH . P 6 HOH C 17 96 96 HOH HOH . P 6 HOH C 18 100 100 HOH HOH . P 6 HOH C 19 124 124 HOH HOH . P 6 HOH C 20 134 134 HOH HOH . P 6 HOH C 21 162 162 HOH HOH . P 6 HOH C 22 178 178 HOH HOH . P 6 HOH C 23 191 191 HOH HOH . P 6 HOH C 24 205 205 HOH HOH . P 6 HOH C 25 213 213 HOH HOH . P 6 HOH C 26 215 215 HOH HOH . P 6 HOH C 27 217 217 HOH HOH . P 6 HOH C 28 222 222 HOH HOH . P 6 HOH C 29 225 225 HOH HOH . P 6 HOH C 30 227 227 HOH HOH . P 6 HOH C 31 229 229 HOH HOH . P 6 HOH C 32 233 233 HOH HOH . P 6 HOH C 33 235 235 HOH HOH . P 6 HOH C 34 249 249 HOH HOH . P 6 HOH C 35 254 254 HOH HOH . P 6 HOH C 36 264 264 HOH HOH . P 6 HOH C 37 266 266 HOH HOH . Q 6 HOH D 1 22 22 HOH HOH . Q 6 HOH D 2 25 25 HOH HOH . Q 6 HOH D 3 46 46 HOH HOH . Q 6 HOH D 4 48 48 HOH HOH . Q 6 HOH D 5 69 69 HOH HOH . Q 6 HOH D 6 73 73 HOH HOH . Q 6 HOH D 7 77 77 HOH HOH . Q 6 HOH D 8 84 84 HOH HOH . Q 6 HOH D 9 85 85 HOH HOH . Q 6 HOH D 10 87 87 HOH HOH . Q 6 HOH D 11 93 93 HOH HOH . Q 6 HOH D 12 104 104 HOH HOH . Q 6 HOH D 13 114 114 HOH HOH . Q 6 HOH D 14 116 116 HOH HOH . Q 6 HOH D 15 118 118 HOH HOH . Q 6 HOH D 16 121 121 HOH HOH . Q 6 HOH D 17 125 125 HOH HOH . Q 6 HOH D 18 140 140 HOH HOH . Q 6 HOH D 19 141 141 HOH HOH . Q 6 HOH D 20 143 143 HOH HOH . Q 6 HOH D 21 154 154 HOH HOH . Q 6 HOH D 22 158 158 HOH HOH . Q 6 HOH D 23 161 161 HOH HOH . Q 6 HOH D 24 166 166 HOH HOH . Q 6 HOH D 25 168 168 HOH HOH . Q 6 HOH D 26 179 179 HOH HOH . Q 6 HOH D 27 182 182 HOH HOH . Q 6 HOH D 28 193 193 HOH HOH . Q 6 HOH D 29 196 196 HOH HOH . Q 6 HOH D 30 203 203 HOH HOH . Q 6 HOH D 31 208 208 HOH HOH . Q 6 HOH D 32 210 210 HOH HOH . Q 6 HOH D 33 224 224 HOH HOH . Q 6 HOH D 34 234 234 HOH HOH . Q 6 HOH D 35 236 236 HOH HOH . Q 6 HOH D 36 237 237 HOH HOH . Q 6 HOH D 37 242 242 HOH HOH . Q 6 HOH D 38 251 251 HOH HOH . Q 6 HOH D 39 265 265 HOH HOH . R 6 HOH E 1 20 20 HOH HOH . R 6 HOH E 2 23 23 HOH HOH . R 6 HOH E 3 28 28 HOH HOH . R 6 HOH E 4 30 30 HOH HOH . R 6 HOH E 5 32 32 HOH HOH . R 6 HOH E 6 44 44 HOH HOH . R 6 HOH E 7 68 68 HOH HOH . R 6 HOH E 8 105 105 HOH HOH . R 6 HOH E 9 110 110 HOH HOH . R 6 HOH E 10 111 111 HOH HOH . R 6 HOH E 11 139 139 HOH HOH . R 6 HOH E 12 146 146 HOH HOH . R 6 HOH E 13 147 147 HOH HOH . R 6 HOH E 14 148 148 HOH HOH . R 6 HOH E 15 167 167 HOH HOH . R 6 HOH E 16 174 174 HOH HOH . R 6 HOH E 17 238 238 HOH HOH . S 6 HOH F 1 11 11 HOH HOH . S 6 HOH F 2 17 17 HOH HOH . S 6 HOH F 3 34 34 HOH HOH . S 6 HOH F 4 36 36 HOH HOH . S 6 HOH F 5 54 54 HOH HOH . S 6 HOH F 6 60 60 HOH HOH . S 6 HOH F 7 88 88 HOH HOH . S 6 HOH F 8 103 103 HOH HOH . S 6 HOH F 9 107 107 HOH HOH . S 6 HOH F 10 108 108 HOH HOH . S 6 HOH F 11 112 112 HOH HOH . S 6 HOH F 12 129 129 HOH HOH . S 6 HOH F 13 135 135 HOH HOH . S 6 HOH F 14 160 160 HOH HOH . S 6 HOH F 15 165 165 HOH HOH . S 6 HOH F 16 169 169 HOH HOH . S 6 HOH F 17 170 170 HOH HOH . S 6 HOH F 18 180 180 HOH HOH . S 6 HOH F 19 185 185 HOH HOH . S 6 HOH F 20 186 186 HOH HOH . S 6 HOH F 21 187 187 HOH HOH . S 6 HOH F 22 200 200 HOH HOH . S 6 HOH F 23 201 201 HOH HOH . S 6 HOH F 24 231 231 HOH HOH . S 6 HOH F 25 232 232 HOH HOH . S 6 HOH F 26 246 246 HOH HOH . S 6 HOH F 27 247 247 HOH HOH . S 6 HOH F 28 248 248 HOH HOH . S 6 HOH F 29 256 256 HOH HOH . T 6 HOH G 1 9 9 HOH HOH . T 6 HOH G 2 14 14 HOH HOH . T 6 HOH G 3 42 42 HOH HOH . T 6 HOH G 4 56 56 HOH HOH . T 6 HOH G 5 67 67 HOH HOH . T 6 HOH G 6 78 78 HOH HOH . T 6 HOH G 7 95 95 HOH HOH . T 6 HOH G 8 106 106 HOH HOH . T 6 HOH G 9 109 109 HOH HOH . T 6 HOH G 10 120 120 HOH HOH . T 6 HOH G 11 123 123 HOH HOH . T 6 HOH G 12 126 126 HOH HOH . T 6 HOH G 13 151 151 HOH HOH . T 6 HOH G 14 164 164 HOH HOH . T 6 HOH G 15 175 175 HOH HOH . T 6 HOH G 16 189 189 HOH HOH . T 6 HOH G 17 194 194 HOH HOH . T 6 HOH G 18 202 202 HOH HOH . T 6 HOH G 19 219 219 HOH HOH . T 6 HOH G 20 250 250 HOH HOH . U 6 HOH H 1 26 26 HOH HOH . U 6 HOH H 2 27 27 HOH HOH . U 6 HOH H 3 43 43 HOH HOH . U 6 HOH H 4 58 58 HOH HOH . U 6 HOH H 5 59 59 HOH HOH . U 6 HOH H 6 61 61 HOH HOH . U 6 HOH H 7 71 71 HOH HOH . U 6 HOH H 8 137 137 HOH HOH . U 6 HOH H 9 188 188 HOH HOH . U 6 HOH H 10 192 192 HOH HOH . U 6 HOH H 11 204 204 HOH HOH . U 6 HOH H 12 211 211 HOH HOH . U 6 HOH H 13 214 214 HOH HOH . U 6 HOH H 14 243 243 HOH HOH . U 6 HOH H 15 253 253 HOH HOH . U 6 HOH H 16 255 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . L 4 16.406 18.417 21.817 1 67.8 ? S1 DTT 1276 C 1 HETATM 2 C C1 DTT . . . L 4 16.185 16.749 22.485 1 61.11 ? C1 DTT 1276 C 1 HETATM 3 C C2 DTT . . . L 4 15.475 16.773 23.839 1 60.16 ? C2 DTT 1276 C 1 HETATM 4 O O2 DTT . . . L 4 16.371 16.338 24.845 1 55.43 ? O2 DTT 1276 C 1 HETATM 5 C C3 DTT . . . L 4 14.152 15.987 23.863 1 61.67 ? C3 DTT 1276 C 1 HETATM 6 O O3 DTT . . . L 4 13.257 16.485 22.891 1 65.38 ? O3 DTT 1276 C 1 HETATM 7 C C4 DTT . . . L 4 14.297 14.481 23.646 1 63.59 ? C4 DTT 1276 C 1 HETATM 8 S S4 DTT . . . L 4 13.458 13.529 24.938 1 65.99 ? S4 DTT 1276 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #