data_3H8I # _model_server_result.job_id -BAiXplS10nNQ9TFzknvqw _model_server_result.datetime_utc '2024-11-05 13:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 3H8I # _exptl.entry_id 3H8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 98.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trisulfane _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H8I _cell.length_a 178.55 _cell.length_b 178.55 _cell.length_c 162.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 129 A CYS 129 1_555 C C8M FAD . A FAD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 ? covale ? covale2 B SG CYS 129 B CYS 129 1_555 J C8M FAD . B FAD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? covale ? covale3 A SG CYS 178 A CYS 178 1_555 D S1 S3H . A S3H 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? covale ? covale4 B SG CYS 178 B CYS 178 1_555 K S1 S3H . B S3H 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? covale ? covale5 A SG CYS 350 A CYS 350 1_555 D S3 S3H . A S3H 1002 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.095 ? covale ? covale6 B SG CYS 350 B CYS 350 1_555 K S3 S3H . B S3H 1002 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'H2 S3' _chem_comp.formula_weight 98.211 _chem_comp.id S3H _chem_comp.mon_nstd_flag . _chem_comp.name trisulfane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H8I _atom_sites.fract_transf_matrix[1][1] 0.005601 _atom_sites.fract_transf_matrix[1][2] 0.003234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 1001 1001 FAD FAD . D 3 S3H A 1 1002 1002 S3H S3H . E 4 PO4 A 1 2001 2001 PO4 PO4 . F 4 PO4 A 1 2002 2002 PO4 PO4 . G 4 PO4 A 1 2003 2003 PO4 PO4 . H 4 PO4 A 1 410 3 PO4 PO4 . I 4 PO4 B 1 2003 2003 PO4 PO4 . J 2 FAD B 1 1001 1001 FAD FAD . K 3 S3H B 1 1002 1002 S3H S3H . L 4 PO4 B 1 2001 2001 PO4 PO4 . M 4 PO4 B 1 2002 2002 PO4 PO4 . N 4 PO4 B 1 410 1 PO4 PO4 . O 4 PO4 B 1 411 2 PO4 PO4 . P 5 HOH A 1 411 1 HOH HOH . P 5 HOH A 2 412 4 HOH HOH . P 5 HOH A 3 413 6 HOH HOH . P 5 HOH A 4 414 7 HOH HOH . P 5 HOH A 5 415 9 HOH HOH . P 5 HOH A 6 416 10 HOH HOH . P 5 HOH A 7 417 11 HOH HOH . P 5 HOH A 8 418 12 HOH HOH . P 5 HOH A 9 419 17 HOH HOH . P 5 HOH A 10 420 18 HOH HOH . P 5 HOH A 11 421 20 HOH HOH . P 5 HOH A 12 422 21 HOH HOH . P 5 HOH A 13 423 22 HOH HOH . P 5 HOH A 14 424 24 HOH HOH . P 5 HOH A 15 425 26 HOH HOH . P 5 HOH A 16 426 30 HOH HOH . P 5 HOH A 17 427 31 HOH HOH . P 5 HOH A 18 428 32 HOH HOH . P 5 HOH A 19 429 33 HOH HOH . P 5 HOH A 20 430 34 HOH HOH . P 5 HOH A 21 431 36 HOH HOH . P 5 HOH A 22 432 38 HOH HOH . P 5 HOH A 23 433 40 HOH HOH . P 5 HOH A 24 434 42 HOH HOH . P 5 HOH A 25 435 45 HOH HOH . P 5 HOH A 26 436 48 HOH HOH . P 5 HOH A 27 437 50 HOH HOH . P 5 HOH A 28 438 51 HOH HOH . P 5 HOH A 29 439 52 HOH HOH . P 5 HOH A 30 440 55 HOH HOH . P 5 HOH A 31 441 56 HOH HOH . P 5 HOH A 32 442 57 HOH HOH . P 5 HOH A 33 443 59 HOH HOH . P 5 HOH A 34 444 63 HOH HOH . P 5 HOH A 35 445 64 HOH HOH . P 5 HOH A 36 446 67 HOH HOH . P 5 HOH A 37 447 72 HOH HOH . P 5 HOH A 38 448 73 HOH HOH . P 5 HOH A 39 449 74 HOH HOH . P 5 HOH A 40 450 75 HOH HOH . P 5 HOH A 41 451 76 HOH HOH . P 5 HOH A 42 452 78 HOH HOH . P 5 HOH A 43 453 80 HOH HOH . P 5 HOH A 44 454 82 HOH HOH . P 5 HOH A 45 455 83 HOH HOH . P 5 HOH A 46 456 85 HOH HOH . P 5 HOH A 47 457 86 HOH HOH . P 5 HOH A 48 458 87 HOH HOH . P 5 HOH A 49 459 88 HOH HOH . P 5 HOH A 50 460 89 HOH HOH . P 5 HOH A 51 461 91 HOH HOH . P 5 HOH A 52 462 94 HOH HOH . P 5 HOH A 53 463 97 HOH HOH . P 5 HOH A 54 464 98 HOH HOH . P 5 HOH A 55 465 99 HOH HOH . P 5 HOH A 56 466 101 HOH HOH . P 5 HOH A 57 467 103 HOH HOH . P 5 HOH A 58 468 104 HOH HOH . P 5 HOH A 59 469 108 HOH HOH . P 5 HOH A 60 470 109 HOH HOH . P 5 HOH A 61 471 112 HOH HOH . P 5 HOH A 62 472 113 HOH HOH . P 5 HOH A 63 473 114 HOH HOH . P 5 HOH A 64 474 115 HOH HOH . P 5 HOH A 65 475 116 HOH HOH . P 5 HOH A 66 476 120 HOH HOH . P 5 HOH A 67 477 122 HOH HOH . P 5 HOH A 68 478 123 HOH HOH . P 5 HOH A 69 479 125 HOH HOH . P 5 HOH A 70 480 127 HOH HOH . P 5 HOH A 71 481 128 HOH HOH . P 5 HOH A 72 482 129 HOH HOH . P 5 HOH A 73 483 130 HOH HOH . P 5 HOH A 74 484 134 HOH HOH . P 5 HOH A 75 485 135 HOH HOH . P 5 HOH A 76 486 139 HOH HOH . P 5 HOH A 77 487 140 HOH HOH . P 5 HOH A 78 488 141 HOH HOH . P 5 HOH A 79 489 142 HOH HOH . P 5 HOH A 80 490 144 HOH HOH . P 5 HOH A 81 491 147 HOH HOH . P 5 HOH A 82 492 149 HOH HOH . P 5 HOH A 83 493 153 HOH HOH . P 5 HOH A 84 494 160 HOH HOH . P 5 HOH A 85 495 167 HOH HOH . P 5 HOH A 86 496 169 HOH HOH . P 5 HOH A 87 497 171 HOH HOH . P 5 HOH A 88 498 175 HOH HOH . P 5 HOH A 89 499 176 HOH HOH . P 5 HOH A 90 500 177 HOH HOH . P 5 HOH A 91 501 185 HOH HOH . P 5 HOH A 92 502 186 HOH HOH . P 5 HOH A 93 503 188 HOH HOH . P 5 HOH A 94 504 191 HOH HOH . P 5 HOH A 95 505 192 HOH HOH . P 5 HOH A 96 506 196 HOH HOH . P 5 HOH A 97 507 197 HOH HOH . P 5 HOH A 98 508 201 HOH HOH . P 5 HOH A 99 509 202 HOH HOH . P 5 HOH A 100 510 203 HOH HOH . P 5 HOH A 101 511 204 HOH HOH . P 5 HOH A 102 512 206 HOH HOH . P 5 HOH A 103 513 207 HOH HOH . P 5 HOH A 104 514 208 HOH HOH . Q 5 HOH B 1 412 2 HOH HOH . Q 5 HOH B 2 413 3 HOH HOH . Q 5 HOH B 3 414 8 HOH HOH . Q 5 HOH B 4 415 13 HOH HOH . Q 5 HOH B 5 416 14 HOH HOH . Q 5 HOH B 6 417 15 HOH HOH . Q 5 HOH B 7 418 16 HOH HOH . Q 5 HOH B 8 419 19 HOH HOH . Q 5 HOH B 9 420 23 HOH HOH . Q 5 HOH B 10 421 25 HOH HOH . Q 5 HOH B 11 422 27 HOH HOH . Q 5 HOH B 12 423 35 HOH HOH . Q 5 HOH B 13 424 37 HOH HOH . Q 5 HOH B 14 425 39 HOH HOH . Q 5 HOH B 15 426 44 HOH HOH . Q 5 HOH B 16 427 46 HOH HOH . Q 5 HOH B 17 428 47 HOH HOH . Q 5 HOH B 18 429 49 HOH HOH . Q 5 HOH B 19 430 58 HOH HOH . Q 5 HOH B 20 431 65 HOH HOH . Q 5 HOH B 21 432 66 HOH HOH . Q 5 HOH B 22 433 70 HOH HOH . Q 5 HOH B 23 434 77 HOH HOH . Q 5 HOH B 24 435 117 HOH HOH . Q 5 HOH B 25 436 118 HOH HOH . Q 5 HOH B 26 437 119 HOH HOH . Q 5 HOH B 27 438 121 HOH HOH . Q 5 HOH B 28 439 131 HOH HOH . Q 5 HOH B 29 440 132 HOH HOH . Q 5 HOH B 30 441 133 HOH HOH . Q 5 HOH B 31 442 136 HOH HOH . Q 5 HOH B 32 443 137 HOH HOH . Q 5 HOH B 33 444 143 HOH HOH . Q 5 HOH B 34 445 146 HOH HOH . Q 5 HOH B 35 446 148 HOH HOH . Q 5 HOH B 36 447 150 HOH HOH . Q 5 HOH B 37 448 151 HOH HOH . Q 5 HOH B 38 449 154 HOH HOH . Q 5 HOH B 39 450 155 HOH HOH . Q 5 HOH B 40 451 156 HOH HOH . Q 5 HOH B 41 452 157 HOH HOH . Q 5 HOH B 42 453 158 HOH HOH . Q 5 HOH B 43 454 159 HOH HOH . Q 5 HOH B 44 455 161 HOH HOH . Q 5 HOH B 45 456 162 HOH HOH . Q 5 HOH B 46 457 163 HOH HOH . Q 5 HOH B 47 458 164 HOH HOH . Q 5 HOH B 48 459 165 HOH HOH . Q 5 HOH B 49 460 166 HOH HOH . Q 5 HOH B 50 461 168 HOH HOH . Q 5 HOH B 51 462 170 HOH HOH . Q 5 HOH B 52 463 172 HOH HOH . Q 5 HOH B 53 464 173 HOH HOH . Q 5 HOH B 54 465 174 HOH HOH . Q 5 HOH B 55 466 178 HOH HOH . Q 5 HOH B 56 467 179 HOH HOH . Q 5 HOH B 57 468 180 HOH HOH . Q 5 HOH B 58 469 182 HOH HOH . Q 5 HOH B 59 470 183 HOH HOH . Q 5 HOH B 60 471 184 HOH HOH . Q 5 HOH B 61 472 189 HOH HOH . Q 5 HOH B 62 473 190 HOH HOH . Q 5 HOH B 63 474 193 HOH HOH . Q 5 HOH B 64 475 194 HOH HOH . Q 5 HOH B 65 476 198 HOH HOH . Q 5 HOH B 66 477 199 HOH HOH . Q 5 HOH B 67 478 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S3 S3H . . . D 3 -95.689 3.225 -19.071 0.52 62.75 ? S3 S3H 1002 A 1 HETATM 2 S S2 S3H . . . D 3 -97.164 2.679 -17.778 1 59.19 ? S2 S3H 1002 A 1 HETATM 3 S S1 S3H . . . D 3 -98.352 1.303 -18.873 0.82 57.44 ? S1 S3H 1002 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #