data_3H9D # _model_server_result.job_id RlZm4ojBH62f-uPfbwDFfQ _model_server_result.datetime_utc '2024-12-26 22:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":120}' # _entry.id 3H9D # _exptl.entry_id 3H9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H9D _cell.length_a 48.1 _cell.length_b 48.6 _cell.length_c 127.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,G 2 1 B,D,E,F,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H9D _atom_sites.fract_transf_matrix[1][1] 0.02079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 119 1 CA CA . D 2 CA B 1 119 1 CA CA . E 2 CA B 1 120 1 CA CA . F 2 CA B 1 121 1 CA CA . G 3 HOH A 1 120 1 HOH HOH . G 3 HOH A 2 121 121 HOH HOH . G 3 HOH A 3 122 122 HOH HOH . G 3 HOH A 4 123 3 HOH HOH . G 3 HOH A 5 124 124 HOH HOH . G 3 HOH A 6 125 10 HOH HOH . G 3 HOH A 7 126 11 HOH HOH . G 3 HOH A 8 127 127 HOH HOH . G 3 HOH A 9 128 128 HOH HOH . G 3 HOH A 10 129 13 HOH HOH . G 3 HOH A 11 130 130 HOH HOH . G 3 HOH A 12 131 17 HOH HOH . G 3 HOH A 13 132 25 HOH HOH . G 3 HOH A 14 133 26 HOH HOH . G 3 HOH A 15 134 28 HOH HOH . G 3 HOH A 16 135 30 HOH HOH . G 3 HOH A 17 136 38 HOH HOH . G 3 HOH A 18 137 39 HOH HOH . G 3 HOH A 19 138 40 HOH HOH . G 3 HOH A 20 139 42 HOH HOH . G 3 HOH A 21 140 49 HOH HOH . G 3 HOH A 22 141 50 HOH HOH . G 3 HOH A 23 142 52 HOH HOH . G 3 HOH A 24 143 53 HOH HOH . G 3 HOH A 25 144 55 HOH HOH . G 3 HOH A 26 145 57 HOH HOH . G 3 HOH A 27 146 60 HOH HOH . G 3 HOH A 28 147 65 HOH HOH . G 3 HOH A 29 148 71 HOH HOH . G 3 HOH A 30 149 74 HOH HOH . G 3 HOH A 31 150 81 HOH HOH . G 3 HOH A 32 151 82 HOH HOH . G 3 HOH A 33 152 3 HOH HOH . G 3 HOH A 34 153 4 HOH HOH . G 3 HOH A 35 154 8 HOH HOH . G 3 HOH A 36 155 9 HOH HOH . G 3 HOH A 37 156 11 HOH HOH . G 3 HOH A 38 157 13 HOH HOH . G 3 HOH A 39 158 16 HOH HOH . G 3 HOH A 40 159 17 HOH HOH . G 3 HOH A 41 160 18 HOH HOH . G 3 HOH A 42 161 21 HOH HOH . G 3 HOH A 43 162 23 HOH HOH . G 3 HOH A 44 163 32 HOH HOH . G 3 HOH A 45 164 33 HOH HOH . G 3 HOH A 46 165 34 HOH HOH . G 3 HOH A 47 166 36 HOH HOH . G 3 HOH A 48 167 38 HOH HOH . G 3 HOH A 49 168 40 HOH HOH . G 3 HOH A 50 169 43 HOH HOH . G 3 HOH A 51 170 49 HOH HOH . G 3 HOH A 52 171 50 HOH HOH . G 3 HOH A 53 172 54 HOH HOH . G 3 HOH A 54 173 57 HOH HOH . G 3 HOH A 55 174 60 HOH HOH . G 3 HOH A 56 175 61 HOH HOH . G 3 HOH A 57 176 66 HOH HOH . G 3 HOH A 58 177 67 HOH HOH . G 3 HOH A 59 178 70 HOH HOH . G 3 HOH A 60 179 72 HOH HOH . G 3 HOH A 61 180 73 HOH HOH . G 3 HOH A 62 181 77 HOH HOH . G 3 HOH A 63 182 79 HOH HOH . G 3 HOH A 64 183 84 HOH HOH . G 3 HOH A 65 184 87 HOH HOH . G 3 HOH A 66 185 93 HOH HOH . G 3 HOH A 67 186 97 HOH HOH . G 3 HOH A 68 187 98 HOH HOH . G 3 HOH A 69 188 100 HOH HOH . G 3 HOH A 70 189 101 HOH HOH . G 3 HOH A 71 190 102 HOH HOH . G 3 HOH A 72 191 104 HOH HOH . G 3 HOH A 73 192 106 HOH HOH . G 3 HOH A 74 193 108 HOH HOH . G 3 HOH A 75 194 109 HOH HOH . G 3 HOH A 76 195 111 HOH HOH . G 3 HOH A 77 196 112 HOH HOH . G 3 HOH A 78 197 115 HOH HOH . G 3 HOH A 79 198 119 HOH HOH . H 3 HOH B 1 122 4 HOH HOH . H 3 HOH B 2 123 7 HOH HOH . H 3 HOH B 3 124 8 HOH HOH . H 3 HOH B 4 125 9 HOH HOH . H 3 HOH B 5 126 15 HOH HOH . H 3 HOH B 6 127 16 HOH HOH . H 3 HOH B 7 128 18 HOH HOH . H 3 HOH B 8 129 21 HOH HOH . H 3 HOH B 9 130 22 HOH HOH . H 3 HOH B 10 131 23 HOH HOH . H 3 HOH B 11 132 24 HOH HOH . H 3 HOH B 12 133 31 HOH HOH . H 3 HOH B 13 134 32 HOH HOH . H 3 HOH B 14 135 33 HOH HOH . H 3 HOH B 15 136 34 HOH HOH . H 3 HOH B 16 137 36 HOH HOH . H 3 HOH B 17 138 37 HOH HOH . H 3 HOH B 18 139 41 HOH HOH . H 3 HOH B 19 140 44 HOH HOH . H 3 HOH B 20 141 45 HOH HOH . H 3 HOH B 21 142 46 HOH HOH . H 3 HOH B 22 143 47 HOH HOH . H 3 HOH B 23 144 48 HOH HOH . H 3 HOH B 24 145 54 HOH HOH . H 3 HOH B 25 146 56 HOH HOH . H 3 HOH B 26 147 58 HOH HOH . H 3 HOH B 27 148 61 HOH HOH . H 3 HOH B 28 149 63 HOH HOH . H 3 HOH B 29 150 64 HOH HOH . H 3 HOH B 30 151 69 HOH HOH . H 3 HOH B 31 152 70 HOH HOH . H 3 HOH B 32 153 75 HOH HOH . H 3 HOH B 33 154 76 HOH HOH . H 3 HOH B 34 155 77 HOH HOH . H 3 HOH B 35 156 83 HOH HOH . H 3 HOH B 36 157 84 HOH HOH . H 3 HOH B 37 158 86 HOH HOH . H 3 HOH B 38 159 87 HOH HOH . H 3 HOH B 39 160 88 HOH HOH . H 3 HOH B 40 161 89 HOH HOH . H 3 HOH B 41 162 6 HOH HOH . H 3 HOH B 42 163 7 HOH HOH . H 3 HOH B 43 164 12 HOH HOH . H 3 HOH B 44 165 14 HOH HOH . H 3 HOH B 45 166 15 HOH HOH . H 3 HOH B 46 167 19 HOH HOH . H 3 HOH B 47 168 20 HOH HOH . H 3 HOH B 48 169 22 HOH HOH . H 3 HOH B 49 170 24 HOH HOH . H 3 HOH B 50 171 25 HOH HOH . H 3 HOH B 51 172 30 HOH HOH . H 3 HOH B 52 173 35 HOH HOH . H 3 HOH B 53 174 37 HOH HOH . H 3 HOH B 54 175 39 HOH HOH . H 3 HOH B 55 176 42 HOH HOH . H 3 HOH B 56 177 44 HOH HOH . H 3 HOH B 57 178 46 HOH HOH . H 3 HOH B 58 179 47 HOH HOH . H 3 HOH B 59 180 48 HOH HOH . H 3 HOH B 60 181 52 HOH HOH . H 3 HOH B 61 182 56 HOH HOH . H 3 HOH B 62 183 58 HOH HOH . H 3 HOH B 63 184 59 HOH HOH . H 3 HOH B 64 185 68 HOH HOH . H 3 HOH B 65 186 69 HOH HOH . H 3 HOH B 66 187 71 HOH HOH . H 3 HOH B 67 188 75 HOH HOH . H 3 HOH B 68 189 76 HOH HOH . H 3 HOH B 69 190 80 HOH HOH . H 3 HOH B 70 191 82 HOH HOH . H 3 HOH B 71 192 83 HOH HOH . H 3 HOH B 72 193 85 HOH HOH . H 3 HOH B 73 194 88 HOH HOH . H 3 HOH B 74 195 91 HOH HOH . H 3 HOH B 75 196 92 HOH HOH . H 3 HOH B 76 197 94 HOH HOH . H 3 HOH B 77 198 95 HOH HOH . H 3 HOH B 78 199 105 HOH HOH . H 3 HOH B 79 200 107 HOH HOH . H 3 HOH B 80 201 110 HOH HOH . H 3 HOH B 81 202 116 HOH HOH . H 3 HOH B 82 203 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -30.394 _atom_site.Cartn_y 14.39 _atom_site.Cartn_z 65.916 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 120 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #