data_3H9J # _model_server_result.job_id rbyHOGvFIuuzEEfFrj8_sA _model_server_result.datetime_utc '2024-11-06 14:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":500}' # _entry.id 3H9J # _exptl.entry_id 3H9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.21 _cell.angle_gamma 90 _cell.entry_id 3H9J _cell.length_a 55.841 _cell.length_b 138.004 _cell.length_c 80.816 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,L,M,S,T 1 1 C,D,G,H,N,O,P,Q,R,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 N N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C MSE 1 G MSE 1 1_555 G N ARG 2 G ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SG CYS 260 A CYS 257 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A SG CYS 263 A CYS 260 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc3 A SG CYS 346 A CYS 343 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A SG CYS 349 A CYS 346 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc5 B SG CYS 260 B CYS 257 1_555 K ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 B SG CYS 263 B CYS 260 1_555 K ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 B SG CYS 346 B CYS 343 1_555 K ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 B SG CYS 349 B CYS 346 1_555 K ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc9 C SG CYS 260 C CYS 257 1_555 N ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 C SG CYS 263 C CYS 260 1_555 N ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc11 C SG CYS 346 C CYS 343 1_555 N ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc12 C SG CYS 349 C CYS 346 1_555 N ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc13 D SG CYS 260 D CYS 257 1_555 Q ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc14 D SG CYS 263 D CYS 260 1_555 Q ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc15 D SG CYS 346 D CYS 343 1_555 Q ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc16 D SG CYS 349 D CYS 346 1_555 Q ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H9J _atom_sites.fract_transf_matrix[1][1] 0.017908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000691 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 500 500 ZN ZN . J 4 APC A 1 359 1 APC APC . K 3 ZN B 1 500 500 ZN ZN . L 4 APC B 1 359 1 APC APC . M 5 SO4 B 1 360 1 SO4 SO4 . N 3 ZN C 1 500 500 ZN ZN . O 4 APC C 1 359 1 APC APC . P 4 APC C 1 360 1 APC APC . Q 3 ZN D 1 500 500 ZN ZN . R 4 APC D 1 359 1 APC APC . S 6 HOH A 1 360 6 HOH HOH . S 6 HOH A 2 361 10 HOH HOH . S 6 HOH A 3 362 12 HOH HOH . S 6 HOH A 4 363 14 HOH HOH . S 6 HOH A 5 364 20 HOH HOH . S 6 HOH A 6 365 21 HOH HOH . S 6 HOH A 7 366 28 HOH HOH . S 6 HOH A 8 367 30 HOH HOH . S 6 HOH A 9 368 32 HOH HOH . S 6 HOH A 10 369 34 HOH HOH . S 6 HOH A 11 370 35 HOH HOH . S 6 HOH A 12 371 39 HOH HOH . S 6 HOH A 13 372 53 HOH HOH . S 6 HOH A 14 373 54 HOH HOH . S 6 HOH A 15 374 56 HOH HOH . S 6 HOH A 16 375 58 HOH HOH . S 6 HOH A 17 376 62 HOH HOH . S 6 HOH A 18 377 63 HOH HOH . S 6 HOH A 19 378 65 HOH HOH . S 6 HOH A 20 379 69 HOH HOH . S 6 HOH A 21 380 72 HOH HOH . S 6 HOH A 22 381 77 HOH HOH . S 6 HOH A 23 382 79 HOH HOH . S 6 HOH A 24 383 91 HOH HOH . S 6 HOH A 25 384 93 HOH HOH . S 6 HOH A 26 385 95 HOH HOH . S 6 HOH A 27 386 96 HOH HOH . S 6 HOH A 28 387 98 HOH HOH . S 6 HOH A 29 388 106 HOH HOH . S 6 HOH A 30 389 108 HOH HOH . S 6 HOH A 31 390 112 HOH HOH . S 6 HOH A 32 391 114 HOH HOH . S 6 HOH A 33 392 117 HOH HOH . S 6 HOH A 34 393 119 HOH HOH . S 6 HOH A 35 394 130 HOH HOH . S 6 HOH A 36 395 132 HOH HOH . S 6 HOH A 37 396 133 HOH HOH . S 6 HOH A 38 397 138 HOH HOH . S 6 HOH A 39 398 139 HOH HOH . S 6 HOH A 40 399 140 HOH HOH . S 6 HOH A 41 400 142 HOH HOH . S 6 HOH A 42 401 144 HOH HOH . S 6 HOH A 43 402 146 HOH HOH . S 6 HOH A 44 403 149 HOH HOH . S 6 HOH A 45 404 150 HOH HOH . S 6 HOH A 46 405 151 HOH HOH . S 6 HOH A 47 406 154 HOH HOH . S 6 HOH A 48 407 160 HOH HOH . S 6 HOH A 49 408 161 HOH HOH . S 6 HOH A 50 409 163 HOH HOH . S 6 HOH A 51 410 164 HOH HOH . S 6 HOH A 52 411 168 HOH HOH . S 6 HOH A 53 412 172 HOH HOH . S 6 HOH A 54 413 174 HOH HOH . S 6 HOH A 55 414 177 HOH HOH . S 6 HOH A 56 415 178 HOH HOH . S 6 HOH A 57 416 179 HOH HOH . S 6 HOH A 58 417 180 HOH HOH . S 6 HOH A 59 418 185 HOH HOH . S 6 HOH A 60 419 190 HOH HOH . S 6 HOH A 61 420 191 HOH HOH . S 6 HOH A 62 421 218 HOH HOH . T 6 HOH B 1 361 5 HOH HOH . T 6 HOH B 2 362 11 HOH HOH . T 6 HOH B 3 363 17 HOH HOH . T 6 HOH B 4 364 22 HOH HOH . T 6 HOH B 5 365 24 HOH HOH . T 6 HOH B 6 366 26 HOH HOH . T 6 HOH B 7 367 29 HOH HOH . T 6 HOH B 8 368 31 HOH HOH . T 6 HOH B 9 369 33 HOH HOH . T 6 HOH B 10 370 43 HOH HOH . T 6 HOH B 11 371 44 HOH HOH . T 6 HOH B 12 372 45 HOH HOH . T 6 HOH B 13 373 47 HOH HOH . T 6 HOH B 14 374 49 HOH HOH . T 6 HOH B 15 375 51 HOH HOH . T 6 HOH B 16 376 57 HOH HOH . T 6 HOH B 17 377 78 HOH HOH . T 6 HOH B 18 378 80 HOH HOH . T 6 HOH B 19 379 81 HOH HOH . T 6 HOH B 20 380 99 HOH HOH . T 6 HOH B 21 381 101 HOH HOH . T 6 HOH B 22 382 104 HOH HOH . T 6 HOH B 23 383 126 HOH HOH . T 6 HOH B 24 384 128 HOH HOH . T 6 HOH B 25 385 147 HOH HOH . T 6 HOH B 26 386 152 HOH HOH . T 6 HOH B 27 387 158 HOH HOH . T 6 HOH B 28 388 171 HOH HOH . T 6 HOH B 29 389 176 HOH HOH . T 6 HOH B 30 390 181 HOH HOH . T 6 HOH B 31 391 182 HOH HOH . T 6 HOH B 32 392 183 HOH HOH . T 6 HOH B 33 393 184 HOH HOH . T 6 HOH B 34 394 192 HOH HOH . T 6 HOH B 35 395 196 HOH HOH . T 6 HOH B 36 396 213 HOH HOH . T 6 HOH B 37 397 215 HOH HOH . T 6 HOH B 38 398 216 HOH HOH . T 6 HOH B 39 399 217 HOH HOH . T 6 HOH B 40 400 219 HOH HOH . T 6 HOH B 41 401 220 HOH HOH . T 6 HOH B 42 402 221 HOH HOH . T 6 HOH B 43 403 222 HOH HOH . T 6 HOH B 44 404 223 HOH HOH . U 6 HOH C 1 361 1 HOH HOH . U 6 HOH C 2 362 2 HOH HOH . U 6 HOH C 3 363 4 HOH HOH . U 6 HOH C 4 364 7 HOH HOH . U 6 HOH C 5 365 8 HOH HOH . U 6 HOH C 6 366 13 HOH HOH . U 6 HOH C 7 367 16 HOH HOH . U 6 HOH C 8 368 18 HOH HOH . U 6 HOH C 9 369 36 HOH HOH . U 6 HOH C 10 370 38 HOH HOH . U 6 HOH C 11 371 41 HOH HOH . U 6 HOH C 12 372 46 HOH HOH . U 6 HOH C 13 373 50 HOH HOH . U 6 HOH C 14 374 52 HOH HOH . U 6 HOH C 15 375 55 HOH HOH . U 6 HOH C 16 376 59 HOH HOH . U 6 HOH C 17 377 61 HOH HOH . U 6 HOH C 18 378 64 HOH HOH . U 6 HOH C 19 379 68 HOH HOH . U 6 HOH C 20 380 70 HOH HOH . U 6 HOH C 21 381 71 HOH HOH . U 6 HOH C 22 382 75 HOH HOH . U 6 HOH C 23 383 83 HOH HOH . U 6 HOH C 24 384 86 HOH HOH . U 6 HOH C 25 385 90 HOH HOH . U 6 HOH C 26 386 94 HOH HOH . U 6 HOH C 27 387 100 HOH HOH . U 6 HOH C 28 388 102 HOH HOH . U 6 HOH C 29 389 103 HOH HOH . U 6 HOH C 30 390 105 HOH HOH . U 6 HOH C 31 391 109 HOH HOH . U 6 HOH C 32 392 113 HOH HOH . U 6 HOH C 33 393 115 HOH HOH . U 6 HOH C 34 394 121 HOH HOH . U 6 HOH C 35 395 122 HOH HOH . U 6 HOH C 36 396 123 HOH HOH . U 6 HOH C 37 397 127 HOH HOH . U 6 HOH C 38 398 129 HOH HOH . U 6 HOH C 39 399 134 HOH HOH . U 6 HOH C 40 400 135 HOH HOH . U 6 HOH C 41 401 136 HOH HOH . U 6 HOH C 42 402 137 HOH HOH . U 6 HOH C 43 403 141 HOH HOH . U 6 HOH C 44 404 143 HOH HOH . U 6 HOH C 45 405 148 HOH HOH . U 6 HOH C 46 406 157 HOH HOH . U 6 HOH C 47 407 159 HOH HOH . U 6 HOH C 48 408 162 HOH HOH . U 6 HOH C 49 409 165 HOH HOH . U 6 HOH C 50 410 166 HOH HOH . U 6 HOH C 51 411 167 HOH HOH . U 6 HOH C 52 412 169 HOH HOH . U 6 HOH C 53 413 173 HOH HOH . U 6 HOH C 54 414 186 HOH HOH . U 6 HOH C 55 415 187 HOH HOH . U 6 HOH C 56 416 188 HOH HOH . U 6 HOH C 57 417 193 HOH HOH . U 6 HOH C 58 418 197 HOH HOH . U 6 HOH C 59 419 200 HOH HOH . U 6 HOH C 60 420 201 HOH HOH . U 6 HOH C 61 421 202 HOH HOH . U 6 HOH C 62 422 203 HOH HOH . U 6 HOH C 63 423 206 HOH HOH . U 6 HOH C 64 424 207 HOH HOH . U 6 HOH C 65 425 208 HOH HOH . U 6 HOH C 66 426 210 HOH HOH . U 6 HOH C 67 427 211 HOH HOH . U 6 HOH C 68 428 212 HOH HOH . U 6 HOH C 69 429 214 HOH HOH . V 6 HOH D 1 360 3 HOH HOH . V 6 HOH D 2 361 9 HOH HOH . V 6 HOH D 3 362 15 HOH HOH . V 6 HOH D 4 363 19 HOH HOH . V 6 HOH D 5 364 23 HOH HOH . V 6 HOH D 6 365 25 HOH HOH . V 6 HOH D 7 366 27 HOH HOH . V 6 HOH D 8 367 37 HOH HOH . V 6 HOH D 9 368 40 HOH HOH . V 6 HOH D 10 369 42 HOH HOH . V 6 HOH D 11 370 48 HOH HOH . V 6 HOH D 12 371 60 HOH HOH . V 6 HOH D 13 372 66 HOH HOH . V 6 HOH D 14 373 67 HOH HOH . V 6 HOH D 15 374 73 HOH HOH . V 6 HOH D 16 375 74 HOH HOH . V 6 HOH D 17 376 76 HOH HOH . V 6 HOH D 18 377 82 HOH HOH . V 6 HOH D 19 378 84 HOH HOH . V 6 HOH D 20 379 85 HOH HOH . V 6 HOH D 21 380 88 HOH HOH . V 6 HOH D 22 381 89 HOH HOH . V 6 HOH D 23 382 92 HOH HOH . V 6 HOH D 24 383 97 HOH HOH . V 6 HOH D 25 384 107 HOH HOH . V 6 HOH D 26 385 110 HOH HOH . V 6 HOH D 27 386 111 HOH HOH . V 6 HOH D 28 387 116 HOH HOH . V 6 HOH D 29 388 118 HOH HOH . V 6 HOH D 30 389 120 HOH HOH . V 6 HOH D 31 390 124 HOH HOH . V 6 HOH D 32 391 125 HOH HOH . V 6 HOH D 33 392 131 HOH HOH . V 6 HOH D 34 393 145 HOH HOH . V 6 HOH D 35 394 153 HOH HOH . V 6 HOH D 36 395 155 HOH HOH . V 6 HOH D 37 396 156 HOH HOH . V 6 HOH D 38 397 170 HOH HOH . V 6 HOH D 39 398 175 HOH HOH . V 6 HOH D 40 399 189 HOH HOH . V 6 HOH D 41 400 194 HOH HOH . V 6 HOH D 42 401 195 HOH HOH . V 6 HOH D 43 402 198 HOH HOH . V 6 HOH D 44 403 199 HOH HOH . V 6 HOH D 45 404 204 HOH HOH . V 6 HOH D 46 405 205 HOH HOH . V 6 HOH D 47 406 209 HOH HOH . W 6 HOH G 1 87 87 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.237 _atom_site.Cartn_y 23.361 _atom_site.Cartn_z 18.478 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #