data_3H9O # _model_server_result.job_id DzIx4lN74HQNwtbxf-Bbvg _model_server_result.datetime_utc '2024-11-07 00:41:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3H9O # _exptl.entry_id 3H9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-imidazol-1-yl)-9-methoxy-8-(2-methoxyethoxy)benzo[c][2,7]naphthyridin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3H9O _cell.length_a 123.77 _cell.length_b 123.77 _cell.length_c 47.116 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 193 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 194 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H19 N5 O3' _chem_comp.formula_weight 365.386 _chem_comp.id 9BD _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-imidazol-1-yl)-9-methoxy-8-(2-methoxyethoxy)benzo[c][2,7]naphthyridin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 9BD sing 1 n n C2 O1 9BD sing 2 n n C2 C3 9BD sing 3 n n C6 C5 9BD doub 4 n y C6 C7 9BD sing 5 n y C6 N2 9BD sing 6 n y C9 C4 9BD doub 7 n y C9 C8 9BD sing 8 n y C9 O3 9BD sing 9 n n C12 C11 9BD doub 10 n y C12 C13 9BD sing 11 n y C15 C11 9BD sing 12 n y C15 C14 9BD doub 13 n y C15 C16 9BD sing 14 n y C18 C17 9BD doub 15 n y C18 N5 9BD sing 16 n y C3 O2 9BD sing 17 n n O2 C4 9BD sing 18 n n C4 C5 9BD sing 19 n y C7 C8 9BD doub 20 n y C7 C11 9BD sing 21 n y O3 C10 9BD sing 22 n n C13 N1 9BD doub 23 n y C13 N4 9BD sing 24 n y N1 C14 9BD sing 25 n y C14 N3 9BD sing 26 n n C16 N2 9BD doub 27 n y N4 C17 9BD sing 28 n y N4 C19 9BD sing 29 n y N5 C19 9BD doub 30 n y C1 H1 9BD sing 31 n n C1 H1A 9BD sing 32 n n C1 H1B 9BD sing 33 n n C2 H2 9BD sing 34 n n C2 H2A 9BD sing 35 n n C12 H12 9BD sing 36 n n C18 H18 9BD sing 37 n n C3 H3 9BD sing 38 n n C3 H3A 9BD sing 39 n n C5 H5 9BD sing 40 n n C8 H8 9BD sing 41 n n C10 H10 9BD sing 42 n n C10 H10A 9BD sing 43 n n C10 H10B 9BD sing 44 n n C16 H16 9BD sing 45 n n N3 HN3 9BD sing 46 n n N3 HN3A 9BD sing 47 n n C17 H17 9BD sing 48 n n C19 H19 9BD sing 49 n n # _atom_sites.entry_id 3H9O _atom_sites.fract_transf_matrix[1][1] 0.00808 _atom_sites.fract_transf_matrix[1][2] 0.004665 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9BD A 1 1 1 9BD 9BD . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 360 1 HOH HOH . C 3 HOH A 49 361 49 HOH HOH . C 3 HOH A 50 362 50 HOH HOH . C 3 HOH A 51 363 51 HOH HOH . C 3 HOH A 52 364 52 HOH HOH . C 3 HOH A 53 365 53 HOH HOH . C 3 HOH A 54 366 54 HOH HOH . C 3 HOH A 55 367 55 HOH HOH . C 3 HOH A 56 368 56 HOH HOH . C 3 HOH A 57 369 57 HOH HOH . C 3 HOH A 58 370 58 HOH HOH . C 3 HOH A 59 371 60 HOH HOH . C 3 HOH A 60 372 61 HOH HOH . C 3 HOH A 61 373 62 HOH HOH . C 3 HOH A 62 374 63 HOH HOH . C 3 HOH A 63 375 64 HOH HOH . C 3 HOH A 64 376 65 HOH HOH . C 3 HOH A 65 377 66 HOH HOH . C 3 HOH A 66 378 67 HOH HOH . C 3 HOH A 67 379 68 HOH HOH . C 3 HOH A 68 380 69 HOH HOH . C 3 HOH A 69 381 70 HOH HOH . C 3 HOH A 70 382 71 HOH HOH . C 3 HOH A 71 383 72 HOH HOH . C 3 HOH A 72 384 73 HOH HOH . C 3 HOH A 73 385 74 HOH HOH . C 3 HOH A 74 386 75 HOH HOH . C 3 HOH A 75 387 76 HOH HOH . C 3 HOH A 76 388 77 HOH HOH . C 3 HOH A 77 389 79 HOH HOH . C 3 HOH A 78 390 80 HOH HOH . C 3 HOH A 79 391 81 HOH HOH . C 3 HOH A 80 392 82 HOH HOH . C 3 HOH A 81 393 83 HOH HOH . C 3 HOH A 82 394 84 HOH HOH . C 3 HOH A 83 395 85 HOH HOH . C 3 HOH A 84 396 86 HOH HOH . C 3 HOH A 85 397 87 HOH HOH . C 3 HOH A 86 398 88 HOH HOH . C 3 HOH A 87 399 89 HOH HOH . C 3 HOH A 88 400 90 HOH HOH . C 3 HOH A 89 401 91 HOH HOH . C 3 HOH A 90 402 93 HOH HOH . C 3 HOH A 91 403 94 HOH HOH . C 3 HOH A 92 404 96 HOH HOH . C 3 HOH A 93 405 97 HOH HOH . C 3 HOH A 94 406 98 HOH HOH . C 3 HOH A 95 407 99 HOH HOH . C 3 HOH A 96 408 100 HOH HOH . C 3 HOH A 97 409 101 HOH HOH . C 3 HOH A 98 410 102 HOH HOH . C 3 HOH A 99 411 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9BD . . . B 2 31.633 -15.974 14.09 1 44.86 ? C1 9BD 1 A 1 HETATM 2 C C2 9BD . . . B 2 33.521 -15.211 15.298 1 38.77 ? C2 9BD 1 A 1 HETATM 3 C C6 9BD . . . B 2 38.668 -14.34 12.897 1 29.44 ? C6 9BD 1 A 1 HETATM 4 C C9 9BD . . . B 2 37.655 -16.849 13.683 1 33.96 ? C9 9BD 1 A 1 HETATM 5 C C12 9BD . . . B 2 41.715 -16.366 12.015 1 30.21 ? C12 9BD 1 A 1 HETATM 6 C C15 9BD . . . B 2 41.205 -14.015 11.851 1 30.65 ? C15 9BD 1 A 1 HETATM 7 C C18 9BD . . . B 2 45.06 -19.015 11.065 1 41.86 ? C18 9BD 1 A 1 HETATM 8 O O1 9BD . . . B 2 32.38 -14.836 14.523 1 50.29 ? O1 9BD 1 A 1 HETATM 9 C C3 9BD . . . B 2 34.77 -14.75 14.557 1 37.26 ? C3 9BD 1 A 1 HETATM 10 O O2 9BD . . . B 2 35.613 -15.872 14.326 1 38.52 ? O2 9BD 1 A 1 HETATM 11 C C4 9BD . . . B 2 36.866 -15.693 13.81 1 37.13 ? C4 9BD 1 A 1 HETATM 12 C C5 9BD . . . B 2 37.393 -14.463 13.417 1 32.1 ? C5 9BD 1 A 1 HETATM 13 C C7 9BD . . . B 2 39.479 -15.48 12.761 1 29.83 ? C7 9BD 1 A 1 HETATM 14 C C8 9BD . . . B 2 38.94 -16.726 13.158 1 34.58 ? C8 9BD 1 A 1 HETATM 15 O O3 9BD . . . B 2 37.106 -18.042 14.076 1 37.51 ? O3 9BD 1 A 1 HETATM 16 C C10 9BD . . . B 2 37.397 -19.203 13.305 1 31.49 ? C10 9BD 1 A 1 HETATM 17 C C11 9BD . . . B 2 40.795 -15.312 12.215 1 30.46 ? C11 9BD 1 A 1 HETATM 18 C C13 9BD . . . B 2 42.972 -16.09 11.479 1 31.63 ? C13 9BD 1 A 1 HETATM 19 N N1 9BD . . . B 2 43.352 -14.835 11.133 1 31.52 ? N1 9BD 1 A 1 HETATM 20 C C14 9BD . . . B 2 42.488 -13.821 11.321 1 33.17 ? C14 9BD 1 A 1 HETATM 21 C C16 9BD . . . B 2 40.303 -12.972 12.049 1 27.83 ? C16 9BD 1 A 1 HETATM 22 N N2 9BD . . . B 2 39.064 -13.111 12.552 1 29.72 ? N2 9BD 1 A 1 HETATM 23 N N3 9BD . . . B 2 42.946 -12.577 10.933 1 27.58 ? N3 9BD 1 A 1 HETATM 24 N N4 9BD . . . B 2 43.935 -17.126 11.289 1 32.57 ? N4 9BD 1 A 1 HETATM 25 C C17 9BD . . . B 2 43.795 -18.503 11.297 1 38.21 ? C17 9BD 1 A 1 HETATM 26 N N5 9BD . . . B 2 45.984 -18.015 10.916 1 35.88 ? N5 9BD 1 A 1 HETATM 27 C C19 9BD . . . B 2 45.285 -16.903 11.056 1 35.14 ? C19 9BD 1 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #