data_3H9P # _model_server_result.job_id OesFO7KnqcW7dDVhfObWeA _model_server_result.datetime_utc '2024-11-09 02:40:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 3H9P # _exptl.entry_id 3H9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.99 _cell.angle_gamma 90 _cell.entry_id 3H9P _cell.length_a 135.806 _cell.length_b 77.725 _cell.length_c 66.654 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H 1 1 C,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.541076 0 66.006946 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 47 A SER 74 1_555 A N MSE 48 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLY 75 A GLY 102 1_555 A N MSE 76 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C MSE 76 A MSE 103 1_555 A N VAL 77 A VAL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C TRP 136 A TRP 163 1_555 A N MSE 137 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C MSE 137 A MSE 164 1_555 A N LYS 138 A LYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A C LYS 138 A LYS 165 1_555 A N MSE 139 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 139 A MSE 166 1_555 A N ALA 140 A ALA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C LYS 193 A LYS 220 1_555 A N MSE 194 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 A C MSE 194 A MSE 221 1_555 A N GLY 195 A GLY 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 B C MSE 48 B MSE 75 1_555 B N ARG 49 B ARG 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C GLY 75 B GLY 102 1_555 B N MSE 76 B MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale12 B C MSE 76 B MSE 103 1_555 B N VAL 77 B VAL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C TRP 136 B TRP 163 1_555 B N MSE 137 B MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 B C MSE 137 B MSE 164 1_555 B N LYS 138 B LYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C LYS 138 B LYS 165 1_555 B N MSE 139 B MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 139 B MSE 166 1_555 B N ALA 140 B ALA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 B C LYS 193 B LYS 220 1_555 B N MSE 194 B MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C MSE 194 B MSE 221 1_555 B N GLY 195 B GLY 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 C C SER 47 C SER 74 1_555 C N MSE 48 C MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 C C MSE 48 C MSE 75 1_555 C N ARG 49 C ARG 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C GLY 75 C GLY 102 1_555 C N MSE 76 C MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 C C MSE 76 C MSE 103 1_555 C N VAL 77 C VAL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale23 C C TRP 136 C TRP 163 1_555 C N MSE 137 C MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale24 C C MSE 137 C MSE 164 1_555 C N LYS 138 C LYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale25 C C LYS 138 C LYS 165 1_555 C N MSE 139 C MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 C C MSE 139 C MSE 166 1_555 C N ALA 140 C ALA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale27 C C LYS 193 C LYS 220 1_555 C N MSE 194 C MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale28 C C MSE 194 C MSE 221 1_555 C N GLY 195 C GLY 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale29 A C MSE 48 A MSE 75 1_555 A N ARG 49 A ARG 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale30 B C SER 47 B SER 74 1_555 B N MSE 48 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3H9P _atom_sites.fract_transf_matrix[1][1] 0.007363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 302 302 CL CL . E 3 GOL A 1 303 303 GOL GOL . F 4 PG4 B 1 301 301 PG4 PG4 . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 5 5 HOH HOH . G 5 HOH A 3 7 7 HOH HOH . G 5 HOH A 4 8 8 HOH HOH . G 5 HOH A 5 21 21 HOH HOH . G 5 HOH A 6 22 22 HOH HOH . G 5 HOH A 7 24 24 HOH HOH . G 5 HOH A 8 26 26 HOH HOH . G 5 HOH A 9 277 29 HOH HOH . G 5 HOH A 10 278 30 HOH HOH . G 5 HOH A 11 279 33 HOH HOH . G 5 HOH A 12 280 34 HOH HOH . G 5 HOH A 13 281 37 HOH HOH . G 5 HOH A 14 282 38 HOH HOH . G 5 HOH A 15 283 40 HOH HOH . G 5 HOH A 16 284 47 HOH HOH . G 5 HOH A 17 285 48 HOH HOH . G 5 HOH A 18 286 49 HOH HOH . G 5 HOH A 19 287 50 HOH HOH . G 5 HOH A 20 288 52 HOH HOH . G 5 HOH A 21 289 53 HOH HOH . G 5 HOH A 22 290 58 HOH HOH . G 5 HOH A 23 291 60 HOH HOH . G 5 HOH A 24 292 62 HOH HOH . G 5 HOH A 25 293 65 HOH HOH . G 5 HOH A 26 294 68 HOH HOH . G 5 HOH A 27 295 70 HOH HOH . G 5 HOH A 28 296 71 HOH HOH . G 5 HOH A 29 297 72 HOH HOH . G 5 HOH A 30 298 77 HOH HOH . G 5 HOH A 31 299 81 HOH HOH . G 5 HOH A 32 300 83 HOH HOH . G 5 HOH A 33 301 85 HOH HOH . G 5 HOH A 34 304 86 HOH HOH . G 5 HOH A 35 305 88 HOH HOH . G 5 HOH A 36 306 89 HOH HOH . G 5 HOH A 37 307 90 HOH HOH . G 5 HOH A 38 308 91 HOH HOH . G 5 HOH A 39 309 92 HOH HOH . G 5 HOH A 40 310 93 HOH HOH . G 5 HOH A 41 311 96 HOH HOH . G 5 HOH A 42 312 98 HOH HOH . G 5 HOH A 43 313 102 HOH HOH . G 5 HOH A 44 314 103 HOH HOH . G 5 HOH A 45 315 104 HOH HOH . G 5 HOH A 46 316 109 HOH HOH . G 5 HOH A 47 317 111 HOH HOH . G 5 HOH A 48 318 112 HOH HOH . G 5 HOH A 49 319 113 HOH HOH . G 5 HOH A 50 320 121 HOH HOH . G 5 HOH A 51 321 122 HOH HOH . G 5 HOH A 52 322 123 HOH HOH . G 5 HOH A 53 323 125 HOH HOH . G 5 HOH A 54 324 126 HOH HOH . G 5 HOH A 55 325 135 HOH HOH . G 5 HOH A 56 326 136 HOH HOH . G 5 HOH A 57 327 137 HOH HOH . G 5 HOH A 58 328 142 HOH HOH . G 5 HOH A 59 329 95 HOH HOH . H 5 HOH B 1 2 2 HOH HOH . H 5 HOH B 2 3 3 HOH HOH . H 5 HOH B 3 4 4 HOH HOH . H 5 HOH B 4 6 6 HOH HOH . H 5 HOH B 5 10 10 HOH HOH . H 5 HOH B 6 11 11 HOH HOH . H 5 HOH B 7 14 14 HOH HOH . H 5 HOH B 8 15 15 HOH HOH . H 5 HOH B 9 16 16 HOH HOH . H 5 HOH B 10 18 18 HOH HOH . H 5 HOH B 11 19 19 HOH HOH . H 5 HOH B 12 20 20 HOH HOH . H 5 HOH B 13 277 28 HOH HOH . H 5 HOH B 14 278 36 HOH HOH . H 5 HOH B 15 279 41 HOH HOH . H 5 HOH B 16 280 51 HOH HOH . H 5 HOH B 17 281 55 HOH HOH . H 5 HOH B 18 282 56 HOH HOH . H 5 HOH B 19 283 57 HOH HOH . H 5 HOH B 20 284 63 HOH HOH . H 5 HOH B 21 285 64 HOH HOH . H 5 HOH B 22 286 67 HOH HOH . H 5 HOH B 23 287 69 HOH HOH . H 5 HOH B 24 288 74 HOH HOH . H 5 HOH B 25 289 76 HOH HOH . H 5 HOH B 26 290 79 HOH HOH . H 5 HOH B 27 291 80 HOH HOH . H 5 HOH B 28 292 84 HOH HOH . H 5 HOH B 29 293 94 HOH HOH . H 5 HOH B 30 295 97 HOH HOH . H 5 HOH B 31 296 99 HOH HOH . H 5 HOH B 32 297 101 HOH HOH . H 5 HOH B 33 298 105 HOH HOH . H 5 HOH B 34 299 107 HOH HOH . H 5 HOH B 35 300 110 HOH HOH . H 5 HOH B 36 302 117 HOH HOH . H 5 HOH B 37 303 118 HOH HOH . H 5 HOH B 38 304 119 HOH HOH . H 5 HOH B 39 305 120 HOH HOH . H 5 HOH B 40 306 127 HOH HOH . H 5 HOH B 41 307 128 HOH HOH . H 5 HOH B 42 308 129 HOH HOH . H 5 HOH B 43 309 130 HOH HOH . H 5 HOH B 44 310 131 HOH HOH . I 5 HOH C 1 9 9 HOH HOH . I 5 HOH C 2 12 12 HOH HOH . I 5 HOH C 3 13 13 HOH HOH . I 5 HOH C 4 17 17 HOH HOH . I 5 HOH C 5 23 23 HOH HOH . I 5 HOH C 6 25 25 HOH HOH . I 5 HOH C 7 27 27 HOH HOH . I 5 HOH C 8 277 31 HOH HOH . I 5 HOH C 9 278 32 HOH HOH . I 5 HOH C 10 279 35 HOH HOH . I 5 HOH C 11 280 39 HOH HOH . I 5 HOH C 12 281 42 HOH HOH . I 5 HOH C 13 282 43 HOH HOH . I 5 HOH C 14 283 44 HOH HOH . I 5 HOH C 15 284 45 HOH HOH . I 5 HOH C 16 285 46 HOH HOH . I 5 HOH C 17 286 54 HOH HOH . I 5 HOH C 18 287 59 HOH HOH . I 5 HOH C 19 288 61 HOH HOH . I 5 HOH C 20 289 66 HOH HOH . I 5 HOH C 21 290 73 HOH HOH . I 5 HOH C 22 291 75 HOH HOH . I 5 HOH C 23 292 78 HOH HOH . I 5 HOH C 24 293 82 HOH HOH . I 5 HOH C 25 294 87 HOH HOH . I 5 HOH C 26 295 100 HOH HOH . I 5 HOH C 27 296 106 HOH HOH . I 5 HOH C 28 297 108 HOH HOH . I 5 HOH C 29 298 114 HOH HOH . I 5 HOH C 30 299 115 HOH HOH . I 5 HOH C 31 300 116 HOH HOH . I 5 HOH C 32 301 124 HOH HOH . I 5 HOH C 33 302 132 HOH HOH . I 5 HOH C 34 303 133 HOH HOH . I 5 HOH C 35 304 134 HOH HOH . I 5 HOH C 36 305 138 HOH HOH . I 5 HOH C 37 306 139 HOH HOH . I 5 HOH C 38 307 140 HOH HOH . I 5 HOH C 39 308 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 30.153 58.839 38.507 1 53.7 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . E 3 29.017 58.056 38.853 1 54.89 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . E 3 31.429 58.344 39.212 1 52.46 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . E 3 31.51 58.938 40.487 1 51.12 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . E 3 32.69 58.718 38.395 1 51.83 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . E 3 33.856 57.998 38.782 1 45.67 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #