data_3H9Q # _model_server_result.job_id xL-KiZe5B9A9Dusw6xFOEA _model_server_result.datetime_utc '2024-11-12 23:28:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 3H9Q # _exptl.entry_id 3H9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.06 _cell.angle_gamma 90 _cell.entry_id 3H9Q _cell.length_a 56.3 _cell.length_b 138.597 _cell.length_c 81.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,L,O,P,S 1 1 C,D,G,H,M,N,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C MSE 1 E MSE 1 1_555 E N ARG 2 E ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 F C MSE 1 F MSE 1 1_555 F N ARG 2 F ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 G C MSE 1 G MSE 1 1_555 G N ARG 2 G ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 H C MSE 1 H MSE 1 1_555 H N ARG 2 H ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.246 ? metalc ? metalc1 A SG CYS 260 A CYS 257 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc2 A SG CYS 263 A CYS 260 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 346 A CYS 343 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 A SG CYS 349 A CYS 346 1_555 I ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 B SG CYS 260 B CYS 257 1_555 J ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 B SG CYS 263 B CYS 260 1_555 J ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc7 B SG CYS 346 B CYS 343 1_555 J ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc8 B SG CYS 349 B CYS 346 1_555 J ZN ZN . B ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc9 C SG CYS 260 C CYS 257 1_555 M ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc10 C SG CYS 263 C CYS 260 1_555 M ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc11 C SG CYS 346 C CYS 343 1_555 M ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc12 C SG CYS 349 C CYS 346 1_555 M ZN ZN . C ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc13 D SG CYS 263 D CYS 260 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc14 D SG CYS 346 D CYS 343 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc15 D SG CYS 349 D CYS 346 1_555 N ZN ZN . D ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H9Q _atom_sites.fract_transf_matrix[1][1] 0.017762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 500 500 ZN ZN . J 3 ZN B 1 500 500 ZN ZN . K 4 SO4 B 1 359 1 SO4 SO4 . L 4 SO4 B 1 360 2 SO4 SO4 . M 3 ZN C 1 500 500 ZN ZN . N 3 ZN D 1 500 500 ZN ZN . O 5 HOH A 1 359 3 HOH HOH . O 5 HOH A 2 360 8 HOH HOH . O 5 HOH A 3 361 9 HOH HOH . O 5 HOH A 4 362 14 HOH HOH . O 5 HOH A 5 363 22 HOH HOH . O 5 HOH A 6 364 24 HOH HOH . O 5 HOH A 7 365 25 HOH HOH . O 5 HOH A 8 366 26 HOH HOH . O 5 HOH A 9 367 31 HOH HOH . O 5 HOH A 10 368 32 HOH HOH . O 5 HOH A 11 369 34 HOH HOH . O 5 HOH A 12 370 35 HOH HOH . O 5 HOH A 13 371 38 HOH HOH . O 5 HOH A 14 372 43 HOH HOH . O 5 HOH A 15 373 45 HOH HOH . O 5 HOH A 16 374 55 HOH HOH . O 5 HOH A 17 375 58 HOH HOH . O 5 HOH A 18 376 63 HOH HOH . O 5 HOH A 19 377 64 HOH HOH . O 5 HOH A 20 378 67 HOH HOH . O 5 HOH A 21 379 69 HOH HOH . O 5 HOH A 22 380 72 HOH HOH . O 5 HOH A 23 381 77 HOH HOH . O 5 HOH A 24 382 78 HOH HOH . O 5 HOH A 25 383 84 HOH HOH . O 5 HOH A 26 384 85 HOH HOH . O 5 HOH A 27 385 91 HOH HOH . O 5 HOH A 28 386 94 HOH HOH . O 5 HOH A 29 387 95 HOH HOH . O 5 HOH A 30 388 96 HOH HOH . O 5 HOH A 31 389 97 HOH HOH . O 5 HOH A 32 390 98 HOH HOH . O 5 HOH A 33 391 104 HOH HOH . O 5 HOH A 34 392 110 HOH HOH . O 5 HOH A 35 393 112 HOH HOH . O 5 HOH A 36 394 121 HOH HOH . O 5 HOH A 37 395 122 HOH HOH . O 5 HOH A 38 396 123 HOH HOH . O 5 HOH A 39 398 130 HOH HOH . O 5 HOH A 40 399 131 HOH HOH . P 5 HOH B 1 361 1 HOH HOH . P 5 HOH B 2 362 4 HOH HOH . P 5 HOH B 3 363 5 HOH HOH . P 5 HOH B 4 364 6 HOH HOH . P 5 HOH B 5 365 12 HOH HOH . P 5 HOH B 6 366 16 HOH HOH . P 5 HOH B 7 367 17 HOH HOH . P 5 HOH B 8 368 33 HOH HOH . P 5 HOH B 9 369 40 HOH HOH . P 5 HOH B 10 370 51 HOH HOH . P 5 HOH B 11 371 52 HOH HOH . P 5 HOH B 12 372 54 HOH HOH . P 5 HOH B 13 373 56 HOH HOH . P 5 HOH B 14 374 57 HOH HOH . P 5 HOH B 15 375 68 HOH HOH . P 5 HOH B 16 376 71 HOH HOH . P 5 HOH B 17 377 74 HOH HOH . P 5 HOH B 18 378 75 HOH HOH . P 5 HOH B 19 379 76 HOH HOH . P 5 HOH B 20 380 81 HOH HOH . P 5 HOH B 21 381 82 HOH HOH . P 5 HOH B 22 382 83 HOH HOH . P 5 HOH B 23 383 86 HOH HOH . P 5 HOH B 24 384 87 HOH HOH . P 5 HOH B 25 385 99 HOH HOH . P 5 HOH B 26 386 100 HOH HOH . P 5 HOH B 27 387 101 HOH HOH . P 5 HOH B 28 388 102 HOH HOH . P 5 HOH B 29 389 103 HOH HOH . P 5 HOH B 30 390 111 HOH HOH . P 5 HOH B 31 391 113 HOH HOH . P 5 HOH B 32 392 114 HOH HOH . P 5 HOH B 33 393 132 HOH HOH . P 5 HOH B 34 394 133 HOH HOH . P 5 HOH B 35 395 134 HOH HOH . P 5 HOH B 36 396 135 HOH HOH . P 5 HOH B 37 397 136 HOH HOH . P 5 HOH B 38 398 139 HOH HOH . P 5 HOH B 39 399 138 HOH HOH . Q 5 HOH C 1 359 2 HOH HOH . Q 5 HOH C 2 360 11 HOH HOH . Q 5 HOH C 3 361 15 HOH HOH . Q 5 HOH C 4 362 18 HOH HOH . Q 5 HOH C 5 363 23 HOH HOH . Q 5 HOH C 6 364 27 HOH HOH . Q 5 HOH C 7 365 28 HOH HOH . Q 5 HOH C 8 366 29 HOH HOH . Q 5 HOH C 9 367 30 HOH HOH . Q 5 HOH C 10 368 37 HOH HOH . Q 5 HOH C 11 369 41 HOH HOH . Q 5 HOH C 12 370 42 HOH HOH . Q 5 HOH C 13 371 46 HOH HOH . Q 5 HOH C 14 372 48 HOH HOH . Q 5 HOH C 15 373 49 HOH HOH . Q 5 HOH C 16 374 50 HOH HOH . Q 5 HOH C 17 375 53 HOH HOH . Q 5 HOH C 18 376 59 HOH HOH . Q 5 HOH C 19 377 61 HOH HOH . Q 5 HOH C 20 378 65 HOH HOH . Q 5 HOH C 21 379 70 HOH HOH . Q 5 HOH C 22 380 73 HOH HOH . Q 5 HOH C 23 381 80 HOH HOH . Q 5 HOH C 24 382 88 HOH HOH . Q 5 HOH C 25 383 89 HOH HOH . Q 5 HOH C 26 385 92 HOH HOH . Q 5 HOH C 27 386 93 HOH HOH . Q 5 HOH C 28 387 105 HOH HOH . Q 5 HOH C 29 388 106 HOH HOH . Q 5 HOH C 30 389 107 HOH HOH . Q 5 HOH C 31 390 109 HOH HOH . Q 5 HOH C 32 391 116 HOH HOH . Q 5 HOH C 33 392 124 HOH HOH . Q 5 HOH C 34 393 128 HOH HOH . Q 5 HOH C 35 394 140 HOH HOH . Q 5 HOH C 36 397 129 HOH HOH . R 5 HOH D 1 359 7 HOH HOH . R 5 HOH D 2 360 10 HOH HOH . R 5 HOH D 3 361 13 HOH HOH . R 5 HOH D 4 362 19 HOH HOH . R 5 HOH D 5 363 20 HOH HOH . R 5 HOH D 6 364 21 HOH HOH . R 5 HOH D 7 365 36 HOH HOH . R 5 HOH D 8 366 39 HOH HOH . R 5 HOH D 9 367 44 HOH HOH . R 5 HOH D 10 368 47 HOH HOH . R 5 HOH D 11 369 60 HOH HOH . R 5 HOH D 12 370 62 HOH HOH . R 5 HOH D 13 371 66 HOH HOH . R 5 HOH D 14 372 79 HOH HOH . R 5 HOH D 15 373 108 HOH HOH . R 5 HOH D 16 374 115 HOH HOH . R 5 HOH D 17 375 117 HOH HOH . R 5 HOH D 18 376 118 HOH HOH . R 5 HOH D 19 377 119 HOH HOH . R 5 HOH D 20 378 120 HOH HOH . R 5 HOH D 21 379 125 HOH HOH . R 5 HOH D 22 380 141 HOH HOH . R 5 HOH D 23 384 90 HOH HOH . S 5 HOH F 1 137 137 HOH HOH . T 5 HOH G 1 126 126 HOH HOH . T 5 HOH G 2 127 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.952 _atom_site.Cartn_y -16.446 _atom_site.Cartn_z -14.185 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #