data_3H9S # _model_server_result.job_id hSYfj9k8hOqhxExG06FRCw _model_server_result.datetime_utc '2025-04-19 05:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":100}' # _entry.id 3H9S # _exptl.entry_id 3H9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.97 _cell.angle_gamma 90 _cell.entry_id 3H9S _cell.length_a 223.106 _cell.length_b 48.308 _cell.length_c 92.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 88 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 D SG CYS 133 D CYS 139 1_555 D SG CYS 183 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf7 E SG CYS 146 E CYS 147 1_555 E SG CYS 211 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3H9S _atom_sites.fract_transf_matrix[1][1] 0.004482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000076 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL A 1 276 1 GOL GOL . G 6 GOL A 1 277 4 GOL GOL . H 6 GOL A 1 278 5 GOL GOL . I 6 GOL B 1 100 2 GOL GOL . J 6 GOL D 1 207 3 GOL GOL . K 6 GOL E 1 247 6 GOL GOL . L 7 HOH A 1 279 5 HOH HOH . L 7 HOH A 2 280 6 HOH HOH . L 7 HOH A 3 281 7 HOH HOH . L 7 HOH A 4 282 9 HOH HOH . L 7 HOH A 5 283 12 HOH HOH . L 7 HOH A 6 284 13 HOH HOH . L 7 HOH A 7 285 18 HOH HOH . L 7 HOH A 8 286 28 HOH HOH . L 7 HOH A 9 287 29 HOH HOH . L 7 HOH A 10 288 30 HOH HOH . L 7 HOH A 11 289 31 HOH HOH . L 7 HOH A 12 290 35 HOH HOH . L 7 HOH A 13 291 36 HOH HOH . L 7 HOH A 14 292 40 HOH HOH . M 7 HOH B 1 101 3 HOH HOH . M 7 HOH B 2 102 11 HOH HOH . M 7 HOH B 3 103 24 HOH HOH . M 7 HOH B 4 104 26 HOH HOH . M 7 HOH B 5 105 34 HOH HOH . M 7 HOH B 6 106 37 HOH HOH . M 7 HOH B 7 107 38 HOH HOH . M 7 HOH B 8 108 39 HOH HOH . N 7 HOH C 1 16 16 HOH HOH . O 7 HOH D 1 208 8 HOH HOH . O 7 HOH D 2 209 20 HOH HOH . O 7 HOH D 3 210 22 HOH HOH . O 7 HOH D 4 211 23 HOH HOH . O 7 HOH D 5 212 25 HOH HOH . P 7 HOH E 1 248 1 HOH HOH . P 7 HOH E 2 249 2 HOH HOH . P 7 HOH E 3 250 4 HOH HOH . P 7 HOH E 4 251 10 HOH HOH . P 7 HOH E 5 252 14 HOH HOH . P 7 HOH E 6 253 15 HOH HOH . P 7 HOH E 7 254 17 HOH HOH . P 7 HOH E 8 255 19 HOH HOH . P 7 HOH E 9 256 21 HOH HOH . P 7 HOH E 10 257 27 HOH HOH . P 7 HOH E 11 258 32 HOH HOH . P 7 HOH E 12 259 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 63.533 -7.776 -6.221 1 76.69 ? C1 GOL 100 B 1 HETATM 2 O O1 GOL . . . I 6 62.621 -6.852 -5.648 1 77.09 ? O1 GOL 100 B 1 HETATM 3 C C2 GOL . . . I 6 63.193 -9.194 -5.774 1 76.39 ? C2 GOL 100 B 1 HETATM 4 O O2 GOL . . . I 6 63.321 -9.25 -4.371 1 76.35 ? O2 GOL 100 B 1 HETATM 5 C C3 GOL . . . I 6 64.205 -10.172 -6.346 1 76.53 ? C3 GOL 100 B 1 HETATM 6 O O3 GOL . . . I 6 64.314 -11.299 -5.492 1 76.47 ? O3 GOL 100 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #