data_3HA7 # _model_server_result.job_id 96HpxPbLIFibXdusRxu-lw _model_server_result.datetime_utc '2024-10-12 18:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ha7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":302}' # _entry.id 3HA7 # _exptl.entry_id 3HA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.641 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-S-[2-(decylamino)ethyl]-5'-thioadenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HA7 _cell.length_a 57.429 _cell.length_b 57.429 _cell.length_c 205.079 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H38 N6 O3 S' _chem_comp.formula_weight 466.641 _chem_comp.id B32 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-S-[2-(decylamino)ethyl]-5'-thioadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-adenosyl-N-decyl-aminoethyl (SADAE)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAS B32 sing 70 n n CAR CAQ B32 sing 71 n n CAR HAR B32 sing 72 n n CAR HARA B32 sing 73 n n CAS CAT B32 sing 74 n n CAS HAS B32 sing 75 n n CAS HASA B32 sing 76 n n CAT CAU B32 sing 77 n n CAT HAT B32 sing 78 n n CAT HATA B32 sing 79 n n CAU CAV B32 sing 80 n n CAU HAU B32 sing 81 n n CAU HAUA B32 sing 82 n n CAV CAW B32 sing 83 n n CAV HAV B32 sing 84 n n CAV HAVA B32 sing 85 n n CAW CAX B32 sing 86 n n CAW HAW B32 sing 87 n n CAW HAWA B32 sing 88 n n CAX CAY B32 sing 89 n n CAX HAX B32 sing 90 n n CAX HAXA B32 sing 91 n n CAY NAZ B32 sing 92 n n CAY HAY B32 sing 93 n n CAY HAYA B32 sing 94 n n NAZ CBA B32 sing 95 n n NAZ HNAZ B32 sing 96 n n CBA CBB B32 sing 97 n n CBA HBA B32 sing 98 n n CBA HBAA B32 sing 99 n n CBB SD B32 sing 100 n n CBB HBB B32 sing 101 n n CBB HBBA B32 sing 102 n n C5' SD B32 sing 103 n n C5' C4' B32 sing 104 n n C5' H5' B32 sing 105 n n C5' "H5'A" B32 sing 106 n n O4' C4' B32 sing 107 n n C4' C3' B32 sing 108 n n C4' H4' B32 sing 109 n n O4' C1' B32 sing 110 n n C3' C2' B32 sing 111 n n C3' O3' B32 sing 112 n n C3' H3' B32 sing 113 n n O3' HO3' B32 sing 114 n n C1' C2' B32 sing 115 n n C2' O2' B32 sing 116 n n C2' H2' B32 sing 117 n n O2' HO2' B32 sing 118 n n N9 C1' B32 sing 119 n n C1' H1' B32 sing 120 n n C8 N9 B32 sing 121 n y N9 C4 B32 sing 122 n y N7 C8 B32 doub 123 n y C8 H8 B32 sing 124 n n N7 C5 B32 sing 125 n y C5 C6 B32 doub 126 n y C5 C4 B32 sing 127 n y C4 N3 B32 doub 128 n y N3 C2 B32 sing 129 n y N1 C2 B32 doub 130 n y C2 H2 B32 sing 131 n n C6 N1 B32 sing 132 n y N6 C6 B32 sing 133 n n N6 HN6 B32 sing 134 n n N6 HN6A B32 sing 135 n n CAP CAQ B32 sing 136 n n CAP HAP B32 sing 137 n n CAP HAPA B32 sing 138 n n CAP HAPB B32 sing 139 n n CAQ HAQ B32 sing 140 n n CAQ HAQA B32 sing 141 n n # _atom_sites.entry_id 3HA7 _atom_sites.fract_transf_matrix[1][1] 0.017413 _atom_sites.fract_transf_matrix[1][2] 0.010053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B32 A 1 302 201 B32 B32 . C 3 HOH A 1 303 1 HOH HOH . C 3 HOH A 2 304 2 HOH HOH . C 3 HOH A 3 305 3 HOH HOH . C 3 HOH A 4 306 4 HOH HOH . C 3 HOH A 5 307 5 HOH HOH . C 3 HOH A 6 308 6 HOH HOH . C 3 HOH A 7 309 7 HOH HOH . C 3 HOH A 8 310 8 HOH HOH . C 3 HOH A 9 311 9 HOH HOH . C 3 HOH A 10 312 10 HOH HOH . C 3 HOH A 11 313 11 HOH HOH . C 3 HOH A 12 314 12 HOH HOH . C 3 HOH A 13 315 13 HOH HOH . C 3 HOH A 14 316 14 HOH HOH . C 3 HOH A 15 317 15 HOH HOH . C 3 HOH A 16 318 16 HOH HOH . C 3 HOH A 17 319 17 HOH HOH . C 3 HOH A 18 320 18 HOH HOH . C 3 HOH A 19 321 19 HOH HOH . C 3 HOH A 20 322 20 HOH HOH . C 3 HOH A 21 323 21 HOH HOH . C 3 HOH A 22 324 22 HOH HOH . C 3 HOH A 23 325 23 HOH HOH . C 3 HOH A 24 326 24 HOH HOH . C 3 HOH A 25 327 25 HOH HOH . C 3 HOH A 26 328 26 HOH HOH . C 3 HOH A 27 329 27 HOH HOH . C 3 HOH A 28 330 28 HOH HOH . C 3 HOH A 29 331 29 HOH HOH . C 3 HOH A 30 332 30 HOH HOH . C 3 HOH A 31 333 31 HOH HOH . C 3 HOH A 32 334 32 HOH HOH . C 3 HOH A 33 335 33 HOH HOH . C 3 HOH A 34 336 34 HOH HOH . C 3 HOH A 35 337 35 HOH HOH . C 3 HOH A 36 338 36 HOH HOH . C 3 HOH A 37 339 37 HOH HOH . C 3 HOH A 38 340 38 HOH HOH . C 3 HOH A 39 341 39 HOH HOH . C 3 HOH A 40 342 40 HOH HOH . C 3 HOH A 41 343 41 HOH HOH . C 3 HOH A 42 344 42 HOH HOH . C 3 HOH A 43 345 43 HOH HOH . C 3 HOH A 44 346 44 HOH HOH . C 3 HOH A 45 347 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR B32 . . . B 2 -30.139 10.915 8.007 1 91.46 ? CAR B32 302 A 1 HETATM 2 C CAS B32 . . . B 2 -29.1 9.958 8.62 1 93.55 ? CAS B32 302 A 1 HETATM 3 C CAT B32 . . . B 2 -27.89 10.694 9.275 1 94.92 ? CAT B32 302 A 1 HETATM 4 C CAU B32 . . . B 2 -27.083 9.869 10.289 1 93.58 ? CAU B32 302 A 1 HETATM 5 C CAV B32 . . . B 2 -27.882 9.644 11.577 1 95.54 ? CAV B32 302 A 1 HETATM 6 C CAW B32 . . . B 2 -27.296 10.4 12.76 1 96.55 ? CAW B32 302 A 1 HETATM 7 C CAX B32 . . . B 2 -27.854 9.854 14.077 1 97.57 ? CAX B32 302 A 1 HETATM 8 C CAY B32 . . . B 2 -28.914 10.78 14.676 1 99.25 ? CAY B32 302 A 1 HETATM 9 N NAZ B32 . . . B 2 -29.768 10.016 15.602 1 100.86 ? NAZ B32 302 A 1 HETATM 10 C CBA B32 . . . B 2 -29.749 10.714 16.9 1 99.52 ? CBA B32 302 A 1 HETATM 11 C CBB B32 . . . B 2 -30.128 9.817 18.08 1 96.07 ? CBB B32 302 A 1 HETATM 12 S SD B32 . . . B 2 -29.134 10.356 19.525 1 98.74 ? SD B32 302 A 1 HETATM 13 C C5' B32 . . . B 2 -27.511 9.47 19.41 1 91.53 ? C5' B32 302 A 1 HETATM 14 C C4' B32 . . . B 2 -27.146 8.835 20.785 1 88.12 ? C4' B32 302 A 1 HETATM 15 O O4' B32 . . . B 2 -26.228 7.715 20.646 1 86.81 ? O4' B32 302 A 1 HETATM 16 C C3' B32 . . . B 2 -26.473 9.85 21.73 1 87.29 ? C3' B32 302 A 1 HETATM 17 O O3' B32 . . . B 2 -27.093 9.759 23.03 1 86.51 ? O3' B32 302 A 1 HETATM 18 C C2' B32 . . . B 2 -24.979 9.443 21.741 1 87.26 ? C2' B32 302 A 1 HETATM 19 O O2' B32 . . . B 2 -24.359 9.763 23.001 1 88.19 ? O2' B32 302 A 1 HETATM 20 C C1' B32 . . . B 2 -25.101 7.914 21.576 1 83.11 ? C1' B32 302 A 1 HETATM 21 N N9 B32 . . . B 2 -23.928 7.079 21.085 1 80.84 ? N9 B32 302 A 1 HETATM 22 C C8 B32 . . . B 2 -23.215 7.228 19.967 1 79.3 ? C8 B32 302 A 1 HETATM 23 N N7 B32 . . . B 2 -22.279 6.272 19.889 1 77.67 ? N7 B32 302 A 1 HETATM 24 C C5 B32 . . . B 2 -22.415 5.501 20.972 1 79.83 ? C5 B32 302 A 1 HETATM 25 C C4 B32 . . . B 2 -23.454 6.017 21.736 1 79 ? C4 B32 302 A 1 HETATM 26 N N3 B32 . . . B 2 -23.804 5.413 22.897 1 78.57 ? N3 B32 302 A 1 HETATM 27 C C2 B32 . . . B 2 -23.19 4.324 23.367 1 79.43 ? C2 B32 302 A 1 HETATM 28 N N1 B32 . . . B 2 -22.167 3.801 22.68 1 80.13 ? N1 B32 302 A 1 HETATM 29 C C6 B32 . . . B 2 -21.771 4.359 21.498 1 79.55 ? C6 B32 302 A 1 HETATM 30 N N6 B32 . . . B 2 -20.785 3.839 20.815 1 78.95 ? N6 B32 302 A 1 HETATM 31 C CAP B32 . A . B 2 -32.472 11.283 9.007 0.5 91.06 ? CAP B32 302 A 1 HETATM 32 C CAP B32 . B . B 2 -31.998 11.751 9.555 0.5 90.89 ? CAP B32 302 A 1 HETATM 33 C CAQ B32 . A . B 2 -30.983 11.603 9.1 0.5 91.73 ? CAQ B32 302 A 1 HETATM 34 C CAQ B32 . B . B 2 -31.538 10.658 8.582 0.5 91.38 ? CAQ B32 302 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #