data_3HAM # _model_server_result.job_id 8jgg-G4o9XxiZgoFtCUs3A _model_server_result.datetime_utc '2024-11-28 16:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ham # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3HAM # _exptl.entry_id 3HAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.4 _cell.angle_gamma 90 _cell.entry_id 3HAM _cell.length_a 79.7 _cell.length_b 58.8 _cell.length_c 81.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3HAM _atom_sites.fract_transf_matrix[1][1] 0.012547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LLL A 1 500 500 LLL LLL . D 3 GOL A 1 300 1 GOL GOL . E 3 GOL A 1 301 4 GOL GOL . F 2 LLL B 1 500 500 LLL LLL . G 3 GOL B 1 300 2 GOL GOL . H 3 GOL B 1 301 3 GOL GOL . I 4 HOH A 1 302 1 HOH HOH . I 4 HOH A 2 303 2 HOH HOH . I 4 HOH A 3 304 3 HOH HOH . I 4 HOH A 4 305 4 HOH HOH . I 4 HOH A 5 306 6 HOH HOH . I 4 HOH A 6 307 7 HOH HOH . I 4 HOH A 7 308 8 HOH HOH . I 4 HOH A 8 309 10 HOH HOH . I 4 HOH A 9 310 12 HOH HOH . I 4 HOH A 10 311 21 HOH HOH . I 4 HOH A 11 312 23 HOH HOH . I 4 HOH A 12 313 28 HOH HOH . I 4 HOH A 13 314 29 HOH HOH . I 4 HOH A 14 315 30 HOH HOH . I 4 HOH A 15 316 31 HOH HOH . I 4 HOH A 16 317 32 HOH HOH . I 4 HOH A 17 318 37 HOH HOH . I 4 HOH A 18 319 38 HOH HOH . I 4 HOH A 19 320 42 HOH HOH . I 4 HOH A 20 321 43 HOH HOH . I 4 HOH A 21 322 44 HOH HOH . I 4 HOH A 22 323 45 HOH HOH . I 4 HOH A 23 324 46 HOH HOH . I 4 HOH A 24 325 50 HOH HOH . I 4 HOH A 25 326 52 HOH HOH . I 4 HOH A 26 327 54 HOH HOH . I 4 HOH A 27 328 56 HOH HOH . I 4 HOH A 28 329 57 HOH HOH . I 4 HOH A 29 330 58 HOH HOH . I 4 HOH A 30 331 59 HOH HOH . I 4 HOH A 31 332 60 HOH HOH . I 4 HOH A 32 333 61 HOH HOH . I 4 HOH A 33 334 63 HOH HOH . I 4 HOH A 34 335 68 HOH HOH . I 4 HOH A 35 336 70 HOH HOH . I 4 HOH A 36 337 71 HOH HOH . I 4 HOH A 37 338 72 HOH HOH . I 4 HOH A 38 339 73 HOH HOH . I 4 HOH A 39 340 75 HOH HOH . I 4 HOH A 40 341 76 HOH HOH . I 4 HOH A 41 342 79 HOH HOH . I 4 HOH A 42 343 80 HOH HOH . I 4 HOH A 43 344 82 HOH HOH . I 4 HOH A 44 345 83 HOH HOH . I 4 HOH A 45 346 88 HOH HOH . I 4 HOH A 46 347 89 HOH HOH . I 4 HOH A 47 348 94 HOH HOH . I 4 HOH A 48 349 96 HOH HOH . I 4 HOH A 49 350 102 HOH HOH . I 4 HOH A 50 351 104 HOH HOH . I 4 HOH A 51 352 107 HOH HOH . I 4 HOH A 52 353 108 HOH HOH . I 4 HOH A 53 354 111 HOH HOH . I 4 HOH A 54 355 113 HOH HOH . I 4 HOH A 55 356 116 HOH HOH . I 4 HOH A 56 357 117 HOH HOH . I 4 HOH A 57 358 119 HOH HOH . I 4 HOH A 58 359 123 HOH HOH . I 4 HOH A 59 360 127 HOH HOH . I 4 HOH A 60 361 128 HOH HOH . I 4 HOH A 61 362 130 HOH HOH . I 4 HOH A 62 363 132 HOH HOH . I 4 HOH A 63 364 133 HOH HOH . I 4 HOH A 64 365 134 HOH HOH . I 4 HOH A 65 366 136 HOH HOH . I 4 HOH A 66 367 137 HOH HOH . I 4 HOH A 67 368 138 HOH HOH . I 4 HOH A 68 369 139 HOH HOH . I 4 HOH A 69 370 145 HOH HOH . I 4 HOH A 70 371 149 HOH HOH . I 4 HOH A 71 372 150 HOH HOH . I 4 HOH A 72 373 151 HOH HOH . I 4 HOH A 73 374 153 HOH HOH . I 4 HOH A 74 375 154 HOH HOH . I 4 HOH A 75 376 158 HOH HOH . I 4 HOH A 76 377 160 HOH HOH . I 4 HOH A 77 378 161 HOH HOH . I 4 HOH A 78 379 162 HOH HOH . I 4 HOH A 79 380 163 HOH HOH . I 4 HOH A 80 381 165 HOH HOH . I 4 HOH A 81 382 166 HOH HOH . I 4 HOH A 82 383 168 HOH HOH . I 4 HOH A 83 384 169 HOH HOH . I 4 HOH A 84 385 175 HOH HOH . I 4 HOH A 85 386 176 HOH HOH . I 4 HOH A 86 387 177 HOH HOH . I 4 HOH A 87 388 178 HOH HOH . I 4 HOH A 88 389 179 HOH HOH . I 4 HOH A 89 390 180 HOH HOH . I 4 HOH A 90 391 181 HOH HOH . I 4 HOH A 91 392 184 HOH HOH . I 4 HOH A 92 393 188 HOH HOH . I 4 HOH A 93 394 191 HOH HOH . I 4 HOH A 94 395 192 HOH HOH . I 4 HOH A 95 396 193 HOH HOH . I 4 HOH A 96 397 195 HOH HOH . I 4 HOH A 97 398 196 HOH HOH . I 4 HOH A 98 399 197 HOH HOH . I 4 HOH A 99 400 202 HOH HOH . I 4 HOH A 100 401 204 HOH HOH . I 4 HOH A 101 402 205 HOH HOH . I 4 HOH A 102 403 207 HOH HOH . I 4 HOH A 103 404 209 HOH HOH . I 4 HOH A 104 405 210 HOH HOH . I 4 HOH A 105 406 211 HOH HOH . I 4 HOH A 106 407 214 HOH HOH . I 4 HOH A 107 408 215 HOH HOH . I 4 HOH A 108 409 221 HOH HOH . I 4 HOH A 109 410 222 HOH HOH . I 4 HOH A 110 411 228 HOH HOH . I 4 HOH A 111 412 229 HOH HOH . I 4 HOH A 112 413 230 HOH HOH . I 4 HOH A 113 414 233 HOH HOH . J 4 HOH B 1 302 5 HOH HOH . J 4 HOH B 2 303 9 HOH HOH . J 4 HOH B 3 304 11 HOH HOH . J 4 HOH B 4 305 13 HOH HOH . J 4 HOH B 5 306 14 HOH HOH . J 4 HOH B 6 307 15 HOH HOH . J 4 HOH B 7 308 16 HOH HOH . J 4 HOH B 8 309 17 HOH HOH . J 4 HOH B 9 310 18 HOH HOH . J 4 HOH B 10 311 19 HOH HOH . J 4 HOH B 11 312 20 HOH HOH . J 4 HOH B 12 313 22 HOH HOH . J 4 HOH B 13 314 24 HOH HOH . J 4 HOH B 14 315 25 HOH HOH . J 4 HOH B 15 316 26 HOH HOH . J 4 HOH B 16 317 27 HOH HOH . J 4 HOH B 17 318 33 HOH HOH . J 4 HOH B 18 319 34 HOH HOH . J 4 HOH B 19 320 35 HOH HOH . J 4 HOH B 20 321 36 HOH HOH . J 4 HOH B 21 322 39 HOH HOH . J 4 HOH B 22 323 40 HOH HOH . J 4 HOH B 23 324 41 HOH HOH . J 4 HOH B 24 325 47 HOH HOH . J 4 HOH B 25 326 48 HOH HOH . J 4 HOH B 26 327 49 HOH HOH . J 4 HOH B 27 328 51 HOH HOH . J 4 HOH B 28 329 53 HOH HOH . J 4 HOH B 29 330 55 HOH HOH . J 4 HOH B 30 331 62 HOH HOH . J 4 HOH B 31 332 64 HOH HOH . J 4 HOH B 32 333 65 HOH HOH . J 4 HOH B 33 334 66 HOH HOH . J 4 HOH B 34 335 67 HOH HOH . J 4 HOH B 35 336 69 HOH HOH . J 4 HOH B 36 337 74 HOH HOH . J 4 HOH B 37 338 77 HOH HOH . J 4 HOH B 38 339 78 HOH HOH . J 4 HOH B 39 340 81 HOH HOH . J 4 HOH B 40 341 84 HOH HOH . J 4 HOH B 41 342 85 HOH HOH . J 4 HOH B 42 343 86 HOH HOH . J 4 HOH B 43 344 87 HOH HOH . J 4 HOH B 44 345 90 HOH HOH . J 4 HOH B 45 346 91 HOH HOH . J 4 HOH B 46 347 92 HOH HOH . J 4 HOH B 47 348 93 HOH HOH . J 4 HOH B 48 349 95 HOH HOH . J 4 HOH B 49 350 97 HOH HOH . J 4 HOH B 50 351 98 HOH HOH . J 4 HOH B 51 352 99 HOH HOH . J 4 HOH B 52 353 100 HOH HOH . J 4 HOH B 53 354 101 HOH HOH . J 4 HOH B 54 355 103 HOH HOH . J 4 HOH B 55 356 105 HOH HOH . J 4 HOH B 56 357 106 HOH HOH . J 4 HOH B 57 358 109 HOH HOH . J 4 HOH B 58 359 110 HOH HOH . J 4 HOH B 59 360 112 HOH HOH . J 4 HOH B 60 361 114 HOH HOH . J 4 HOH B 61 362 115 HOH HOH . J 4 HOH B 62 363 118 HOH HOH . J 4 HOH B 63 364 120 HOH HOH . J 4 HOH B 64 365 121 HOH HOH . J 4 HOH B 65 366 122 HOH HOH . J 4 HOH B 66 367 124 HOH HOH . J 4 HOH B 67 368 125 HOH HOH . J 4 HOH B 68 369 126 HOH HOH . J 4 HOH B 69 370 129 HOH HOH . J 4 HOH B 70 371 131 HOH HOH . J 4 HOH B 71 372 135 HOH HOH . J 4 HOH B 72 373 140 HOH HOH . J 4 HOH B 73 374 141 HOH HOH . J 4 HOH B 74 375 142 HOH HOH . J 4 HOH B 75 376 143 HOH HOH . J 4 HOH B 76 377 144 HOH HOH . J 4 HOH B 77 378 146 HOH HOH . J 4 HOH B 78 379 147 HOH HOH . J 4 HOH B 79 380 148 HOH HOH . J 4 HOH B 80 381 152 HOH HOH . J 4 HOH B 81 382 155 HOH HOH . J 4 HOH B 82 383 156 HOH HOH . J 4 HOH B 83 384 157 HOH HOH . J 4 HOH B 84 385 159 HOH HOH . J 4 HOH B 85 386 164 HOH HOH . J 4 HOH B 86 387 167 HOH HOH . J 4 HOH B 87 388 170 HOH HOH . J 4 HOH B 88 389 171 HOH HOH . J 4 HOH B 89 390 172 HOH HOH . J 4 HOH B 90 391 173 HOH HOH . J 4 HOH B 91 392 174 HOH HOH . J 4 HOH B 92 393 182 HOH HOH . J 4 HOH B 93 394 183 HOH HOH . J 4 HOH B 94 395 185 HOH HOH . J 4 HOH B 95 396 186 HOH HOH . J 4 HOH B 96 397 187 HOH HOH . J 4 HOH B 97 398 189 HOH HOH . J 4 HOH B 98 399 190 HOH HOH . J 4 HOH B 99 400 194 HOH HOH . J 4 HOH B 100 401 198 HOH HOH . J 4 HOH B 101 402 199 HOH HOH . J 4 HOH B 102 403 200 HOH HOH . J 4 HOH B 103 404 201 HOH HOH . J 4 HOH B 104 405 203 HOH HOH . J 4 HOH B 105 406 206 HOH HOH . J 4 HOH B 106 407 208 HOH HOH . J 4 HOH B 107 408 212 HOH HOH . J 4 HOH B 108 409 213 HOH HOH . J 4 HOH B 109 410 216 HOH HOH . J 4 HOH B 110 411 217 HOH HOH . J 4 HOH B 111 412 218 HOH HOH . J 4 HOH B 112 413 219 HOH HOH . J 4 HOH B 113 414 220 HOH HOH . J 4 HOH B 114 415 223 HOH HOH . J 4 HOH B 115 416 224 HOH HOH . J 4 HOH B 116 417 225 HOH HOH . J 4 HOH B 117 418 226 HOH HOH . J 4 HOH B 118 419 227 HOH HOH . J 4 HOH B 119 420 231 HOH HOH . J 4 HOH B 120 421 232 HOH HOH . J 4 HOH B 121 422 234 HOH HOH . J 4 HOH B 122 423 235 HOH HOH . J 4 HOH B 123 424 236 HOH HOH . J 4 HOH B 124 425 237 HOH HOH . J 4 HOH B 125 426 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 8.612 2.413 22.965 0.75 45.46 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 3 8.235 3.066 21.777 0.75 44.01 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 3 8.745 0.919 22.7 0.75 45.98 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 3 10.115 0.608 22.632 0.75 45.53 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 3 8.099 0.077 23.817 0.75 47.42 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 3 7.038 0.758 24.463 0.75 45.02 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #