data_3HAO # _model_server_result.job_id OEBIhjaCwfBB2C0Jik-kDw _model_server_result.datetime_utc '2024-10-31 07:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3HAO # _exptl.entry_id 3HAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.03 _cell.angle_gamma 90 _cell.entry_id 3HAO _cell.length_a 45.556 _cell.length_b 108.714 _cell.length_c 56.193 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 D C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 243 n n C1 C6 RET sing 244 n n C1 C16 RET sing 245 n n C1 C17 RET sing 246 n n C2 C3 RET sing 247 n n C2 H21 RET sing 248 n n C2 H22 RET sing 249 n n C3 C4 RET sing 250 n n C3 H31 RET sing 251 n n C3 H32 RET sing 252 n n C4 C5 RET sing 253 n n C4 H41 RET sing 254 n n C4 H42 RET sing 255 n n C5 C6 RET doub 256 n n C5 C18 RET sing 257 n n C6 C7 RET sing 258 n n C7 C8 RET doub 259 e n C7 H7 RET sing 260 n n C8 C9 RET sing 261 n n C8 H8 RET sing 262 n n C9 C10 RET doub 263 e n C9 C19 RET sing 264 n n C10 C11 RET sing 265 n n C10 H10 RET sing 266 n n C11 C12 RET doub 267 e n C11 H11 RET sing 268 n n C12 C13 RET sing 269 n n C12 H12 RET sing 270 n n C13 C14 RET doub 271 e n C13 C20 RET sing 272 n n C14 C15 RET sing 273 n n C14 H14 RET sing 274 n n C15 O1 RET doub 275 n n C15 H15 RET sing 276 n n C16 H161 RET sing 277 n n C16 H162 RET sing 278 n n C16 H163 RET sing 279 n n C17 H171 RET sing 280 n n C17 H172 RET sing 281 n n C17 H173 RET sing 282 n n C18 H181 RET sing 283 n n C18 H182 RET sing 284 n n C18 H183 RET sing 285 n n C19 H191 RET sing 286 n n C19 H192 RET sing 287 n n C19 H193 RET sing 288 n n C20 H201 RET sing 289 n n C20 H202 RET sing 290 n n C20 H203 RET sing 291 n n # _atom_sites.entry_id 3HAO _atom_sites.fract_transf_matrix[1][1] 0.021951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009787 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 2 RET B 1 301 301 RET RET . E 3 HOH A 1 250 1 HOH TIP . E 3 HOH A 2 251 2 HOH TIP . E 3 HOH A 3 252 3 HOH TIP . E 3 HOH A 4 253 6 HOH TIP . E 3 HOH A 5 254 7 HOH TIP . E 3 HOH A 6 255 8 HOH TIP . E 3 HOH A 7 256 9 HOH TIP . E 3 HOH A 8 257 11 HOH TIP . E 3 HOH A 9 258 12 HOH TIP . E 3 HOH A 10 259 16 HOH TIP . E 3 HOH A 11 260 17 HOH TIP . E 3 HOH A 12 261 18 HOH TIP . E 3 HOH A 13 262 19 HOH TIP . E 3 HOH A 14 263 20 HOH TIP . E 3 HOH A 15 264 21 HOH TIP . E 3 HOH A 16 265 22 HOH TIP . E 3 HOH A 17 266 23 HOH TIP . E 3 HOH A 18 267 24 HOH TIP . E 3 HOH A 19 268 27 HOH TIP . E 3 HOH A 20 269 28 HOH TIP . E 3 HOH A 21 270 32 HOH TIP . E 3 HOH A 22 271 34 HOH TIP . E 3 HOH A 23 272 38 HOH TIP . E 3 HOH A 24 273 39 HOH TIP . E 3 HOH A 25 274 41 HOH TIP . E 3 HOH A 26 275 42 HOH TIP . E 3 HOH A 27 276 46 HOH TIP . E 3 HOH A 28 277 47 HOH TIP . E 3 HOH A 29 278 48 HOH TIP . E 3 HOH A 30 279 51 HOH TIP . E 3 HOH A 31 280 52 HOH TIP . E 3 HOH A 32 281 53 HOH TIP . E 3 HOH A 33 282 56 HOH TIP . E 3 HOH A 34 283 58 HOH TIP . E 3 HOH A 35 284 59 HOH TIP . E 3 HOH A 36 285 60 HOH TIP . E 3 HOH A 37 286 61 HOH TIP . E 3 HOH A 38 287 65 HOH TIP . E 3 HOH A 39 288 66 HOH TIP . F 3 HOH B 1 250 4 HOH TIP . F 3 HOH B 2 251 5 HOH TIP . F 3 HOH B 3 252 10 HOH TIP . F 3 HOH B 4 253 13 HOH TIP . F 3 HOH B 5 254 14 HOH TIP . F 3 HOH B 6 255 15 HOH TIP . F 3 HOH B 7 256 25 HOH TIP . F 3 HOH B 8 257 26 HOH TIP . F 3 HOH B 9 258 29 HOH TIP . F 3 HOH B 10 259 30 HOH TIP . F 3 HOH B 11 260 31 HOH TIP . F 3 HOH B 12 261 33 HOH TIP . F 3 HOH B 13 262 35 HOH TIP . F 3 HOH B 14 263 36 HOH TIP . F 3 HOH B 15 264 37 HOH TIP . F 3 HOH B 16 265 40 HOH TIP . F 3 HOH B 17 266 43 HOH TIP . F 3 HOH B 18 267 44 HOH TIP . F 3 HOH B 19 268 45 HOH TIP . F 3 HOH B 20 269 49 HOH TIP . F 3 HOH B 21 270 50 HOH TIP . F 3 HOH B 22 271 54 HOH TIP . F 3 HOH B 23 272 55 HOH TIP . F 3 HOH B 24 273 57 HOH TIP . F 3 HOH B 25 274 62 HOH TIP . F 3 HOH B 26 275 63 HOH TIP . F 3 HOH B 27 276 64 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 2 -4.264 -3.412 -2.222 1 19.59 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . D 2 -3.393 -4.631 -1.678 1 19.64 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . D 2 -2.821 -4.541 -0.322 1 19.51 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . D 2 -2.311 -3.174 0.103 1 21.08 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . D 2 -3.079 -1.915 -0.36 1 20.88 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . D 2 -4.01 -1.995 -1.44 1 19.96 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . D 2 -4.675 -0.666 -1.74 1 20.71 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . D 2 -5.603 -0.28 -2.683 1 20.8 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . D 2 -6.205 1.007 -2.941 1 20.89 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . D 2 -7.057 0.947 -4.003 1 19.59 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . D 2 -7.779 2.129 -4.472 1 20.33 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . D 2 -8.56 1.788 -5.519 1 22.13 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . D 2 -9.441 2.712 -6.196 1 22.39 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . D 2 -10.117 2.081 -7.232 1 21.88 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . D 2 -11.064 2.725 -8.105 1 20.06 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . D 2 -3.949 -3.283 -3.716 1 18.29 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . D 2 -5.741 -3.977 -2.142 1 18.26 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . D 2 -2.659 -0.758 0.479 1 18.69 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . D 2 -5.906 2.26 -2.145 1 18.91 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . D 2 -9.585 4.139 -5.797 1 22.75 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #