data_3HAP # _model_server_result.job_id Mb3Ox-38rsVKxwrE01_gNw _model_server_result.datetime_utc '2024-11-22 19:18:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":256}' # _entry.id 3HAP # _exptl.entry_id 3HAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAP _cell.length_a 44.951 _cell.length_b 102.135 _cell.length_c 128.027 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.269 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 204 n n C1 H11 D12 sing 205 n n C1 H12 D12 sing 206 n n C1 H13 D12 sing 207 n n C2 C3 D12 sing 208 n n C2 H21 D12 sing 209 n n C2 H22 D12 sing 210 n n C3 C4 D12 sing 211 n n C3 H31 D12 sing 212 n n C3 H32 D12 sing 213 n n C4 C5 D12 sing 214 n n C4 H41 D12 sing 215 n n C4 H42 D12 sing 216 n n C5 C6 D12 sing 217 n n C5 H51 D12 sing 218 n n C5 H52 D12 sing 219 n n C6 C7 D12 sing 220 n n C6 H61 D12 sing 221 n n C6 H62 D12 sing 222 n n C7 C8 D12 sing 223 n n C7 H71 D12 sing 224 n n C7 H72 D12 sing 225 n n C8 C9 D12 sing 226 n n C8 H81 D12 sing 227 n n C8 H82 D12 sing 228 n n C9 C10 D12 sing 229 n n C9 H91 D12 sing 230 n n C9 H92 D12 sing 231 n n C10 C11 D12 sing 232 n n C10 H101 D12 sing 233 n n C10 H102 D12 sing 234 n n C11 C12 D12 sing 235 n n C11 H111 D12 sing 236 n n C11 H112 D12 sing 237 n n C12 H121 D12 sing 238 n n C12 H122 D12 sing 239 n n C12 H123 D12 sing 240 n n # _atom_sites.entry_id 3HAP _atom_sites.fract_transf_matrix[1][1] 0.022246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 402 402 D12 D12 . D 3 D12 A 1 403 403 D12 D12 . E 3 D12 A 1 405 405 D12 D12 . F 4 D10 A 1 406 406 D10 D10 . G 4 D10 A 1 409 409 D10 D10 . H 5 R16 A 1 411 411 R16 R16 . I 6 CPS A 1 501 501 CPS CPS . J 4 D10 A 1 250 250 D10 D10 . K 3 D12 A 1 251 251 D12 D12 . L 7 HP6 A 1 401 401 HP6 HP6 . M 3 D12 A 1 252 252 D12 D12 . N 8 DD9 A 1 253 253 DD9 DD9 . O 3 D12 A 1 254 254 D12 D12 . P 3 D12 A 1 255 255 D12 D12 . Q 3 D12 A 1 256 256 D12 D12 . R 4 D10 A 1 257 257 D10 D10 . S 9 HOH A 1 258 258 HOH HOH . S 9 HOH A 2 259 259 HOH HOH . S 9 HOH A 3 260 260 HOH HOH . S 9 HOH A 4 261 261 HOH HOH . S 9 HOH A 5 262 262 HOH HOH . S 9 HOH A 6 263 263 HOH HOH . S 9 HOH A 7 264 264 HOH HOH . S 9 HOH A 8 265 265 HOH HOH . S 9 HOH A 9 266 266 HOH HOH . S 9 HOH A 10 267 267 HOH HOH . S 9 HOH A 11 268 268 HOH HOH . S 9 HOH A 12 269 269 HOH HOH . S 9 HOH A 13 270 270 HOH HOH . S 9 HOH A 14 271 271 HOH HOH . S 9 HOH A 15 272 272 HOH HOH . S 9 HOH A 16 273 273 HOH HOH . S 9 HOH A 17 274 274 HOH HOH . S 9 HOH A 18 275 275 HOH HOH . S 9 HOH A 19 276 276 HOH HOH . S 9 HOH A 20 277 277 HOH HOH . S 9 HOH A 21 278 278 HOH HOH . S 9 HOH A 22 279 279 HOH HOH . S 9 HOH A 23 280 280 HOH HOH . S 9 HOH A 24 281 281 HOH HOH . S 9 HOH A 25 282 282 HOH HOH . S 9 HOH A 26 283 283 HOH HOH . S 9 HOH A 27 284 284 HOH HOH . S 9 HOH A 28 285 285 HOH HOH . S 9 HOH A 29 286 286 HOH HOH . S 9 HOH A 30 287 287 HOH HOH . S 9 HOH A 31 288 288 HOH HOH . S 9 HOH A 32 289 289 HOH HOH . S 9 HOH A 33 290 290 HOH HOH . S 9 HOH A 34 291 291 HOH HOH . S 9 HOH A 35 292 292 HOH HOH . S 9 HOH A 36 293 293 HOH HOH . S 9 HOH A 37 294 294 HOH HOH . S 9 HOH A 38 295 295 HOH HOH . S 9 HOH A 39 296 296 HOH HOH . S 9 HOH A 40 297 297 HOH HOH . S 9 HOH A 41 298 298 HOH HOH . S 9 HOH A 42 299 299 HOH HOH . S 9 HOH A 43 300 300 HOH HOH . S 9 HOH A 44 302 302 HOH HOH . S 9 HOH A 45 303 303 HOH HOH . S 9 HOH A 46 304 304 HOH HOH . S 9 HOH A 47 305 305 HOH HOH . S 9 HOH A 48 306 306 HOH HOH . S 9 HOH A 49 307 307 HOH HOH . S 9 HOH A 50 308 308 HOH HOH . S 9 HOH A 51 309 309 HOH HOH . S 9 HOH A 52 310 310 HOH HOH . S 9 HOH A 53 311 311 HOH HOH . S 9 HOH A 54 312 312 HOH HOH . S 9 HOH A 55 313 313 HOH HOH . S 9 HOH A 56 314 314 HOH HOH . S 9 HOH A 57 315 315 HOH HOH . S 9 HOH A 58 316 316 HOH HOH . S 9 HOH A 59 317 317 HOH HOH . S 9 HOH A 60 318 318 HOH HOH . S 9 HOH A 61 319 319 HOH HOH . S 9 HOH A 62 320 320 HOH HOH . S 9 HOH A 63 321 321 HOH HOH . S 9 HOH A 64 322 322 HOH HOH . S 9 HOH A 65 323 323 HOH HOH . S 9 HOH A 66 324 324 HOH HOH . S 9 HOH A 67 325 325 HOH HOH . S 9 HOH A 68 326 326 HOH HOH . S 9 HOH A 69 327 327 HOH HOH . S 9 HOH A 70 328 328 HOH HOH . S 9 HOH A 71 329 329 HOH HOH . S 9 HOH A 72 330 330 HOH HOH . S 9 HOH A 73 331 331 HOH HOH . S 9 HOH A 74 332 332 HOH HOH . S 9 HOH A 75 333 333 HOH HOH . S 9 HOH A 76 334 334 HOH HOH . S 9 HOH A 77 335 335 HOH HOH . S 9 HOH A 78 336 336 HOH HOH . S 9 HOH A 79 337 337 HOH HOH . S 9 HOH A 80 338 338 HOH HOH . S 9 HOH A 81 339 339 HOH HOH . S 9 HOH A 82 340 340 HOH HOH . S 9 HOH A 83 341 341 HOH HOH . S 9 HOH A 84 342 342 HOH HOH . S 9 HOH A 85 343 343 HOH HOH . S 9 HOH A 86 344 344 HOH HOH . S 9 HOH A 87 345 345 HOH HOH . S 9 HOH A 88 346 346 HOH HOH . S 9 HOH A 89 347 347 HOH HOH . S 9 HOH A 90 348 348 HOH HOH . S 9 HOH A 91 349 349 HOH HOH . S 9 HOH A 92 350 350 HOH HOH . S 9 HOH A 93 351 351 HOH HOH . S 9 HOH A 94 352 352 HOH HOH . S 9 HOH A 95 353 353 HOH HOH . S 9 HOH A 96 354 354 HOH HOH . S 9 HOH A 97 355 355 HOH HOH . S 9 HOH A 98 356 356 HOH HOH . S 9 HOH A 99 357 357 HOH HOH . S 9 HOH A 100 358 358 HOH HOH . S 9 HOH A 101 359 359 HOH HOH . S 9 HOH A 102 360 360 HOH HOH . S 9 HOH A 103 361 361 HOH HOH . S 9 HOH A 104 362 362 HOH HOH . S 9 HOH A 105 363 363 HOH HOH . S 9 HOH A 106 364 364 HOH HOH . S 9 HOH A 107 365 365 HOH HOH . S 9 HOH A 108 366 366 HOH HOH . S 9 HOH A 109 367 367 HOH HOH . S 9 HOH A 110 368 368 HOH HOH . S 9 HOH A 111 369 369 HOH HOH . S 9 HOH A 112 370 370 HOH HOH . S 9 HOH A 113 371 371 HOH HOH . S 9 HOH A 114 372 372 HOH HOH . S 9 HOH A 115 373 373 HOH HOH . S 9 HOH A 116 374 374 HOH HOH . S 9 HOH A 117 375 375 HOH HOH . S 9 HOH A 118 376 376 HOH HOH . S 9 HOH A 119 377 377 HOH HOH . S 9 HOH A 120 378 378 HOH HOH . S 9 HOH A 121 379 379 HOH HOH . S 9 HOH A 122 380 380 HOH HOH . S 9 HOH A 123 381 381 HOH HOH . S 9 HOH A 124 382 382 HOH HOH . S 9 HOH A 125 383 383 HOH HOH . S 9 HOH A 126 384 384 HOH HOH . S 9 HOH A 127 385 385 HOH HOH . S 9 HOH A 128 386 386 HOH HOH . S 9 HOH A 129 387 387 HOH HOH . S 9 HOH A 130 388 388 HOH HOH . S 9 HOH A 131 389 389 HOH HOH . S 9 HOH A 132 390 390 HOH HOH . S 9 HOH A 133 391 391 HOH HOH . S 9 HOH A 134 392 392 HOH HOH . S 9 HOH A 135 393 393 HOH HOH . S 9 HOH A 136 394 394 HOH HOH . S 9 HOH A 137 395 395 HOH HOH . S 9 HOH A 138 396 396 HOH HOH . S 9 HOH A 139 397 397 HOH HOH . S 9 HOH A 140 398 398 HOH HOH . S 9 HOH A 141 399 399 HOH HOH . S 9 HOH A 142 400 400 HOH HOH . S 9 HOH A 143 404 404 HOH HOH . S 9 HOH A 144 407 407 HOH HOH . S 9 HOH A 145 408 408 HOH HOH . S 9 HOH A 146 410 410 HOH HOH . S 9 HOH A 147 412 412 HOH HOH . S 9 HOH A 148 413 413 HOH HOH . S 9 HOH A 149 414 414 HOH HOH . S 9 HOH A 150 415 415 HOH HOH . S 9 HOH A 151 416 416 HOH HOH . S 9 HOH A 152 417 417 HOH HOH . S 9 HOH A 153 418 418 HOH HOH . S 9 HOH A 154 419 419 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . Q 3 21.717 32.652 14.561 1 53.71 ? C1 D12 256 A 1 HETATM 2 C C2 D12 . . . Q 3 20.459 32.935 13.763 1 53.32 ? C2 D12 256 A 1 HETATM 3 C C3 D12 . . . Q 3 20.754 33.112 12.277 1 53.35 ? C3 D12 256 A 1 HETATM 4 C C4 D12 . . . Q 3 20.441 31.841 11.49 1 53.35 ? C4 D12 256 A 1 HETATM 5 C C5 D12 . . . Q 3 19.208 32.013 10.608 1 53.49 ? C5 D12 256 A 1 HETATM 6 C C6 D12 . . . Q 3 18.346 30.766 10.65 1 53.36 ? C6 D12 256 A 1 HETATM 7 C C7 D12 . . . Q 3 17.51 30.555 9.717 1 52.99 ? C7 D12 256 A 1 HETATM 8 C C8 D12 . . . Q 3 16.645 30.532 8.886 1 52.34 ? C8 D12 256 A 1 HETATM 9 C C9 D12 . . . Q 3 15.932 30.433 7.922 1 52.13 ? C9 D12 256 A 1 HETATM 10 C C10 D12 . . . Q 3 15.161 30.051 6.972 1 51.93 ? C10 D12 256 A 1 HETATM 11 C C11 D12 . . . Q 3 14.266 30.856 6.495 1 51.79 ? C11 D12 256 A 1 HETATM 12 C C12 D12 . . . Q 3 13.347 31.399 5.738 1 51.95 ? C12 D12 256 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #