data_3HAP # _model_server_result.job_id jI-59hiDWRF6kGd1baG-Rg _model_server_result.datetime_utc '2024-11-05 08:12:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3HAP # _exptl.entry_id 3HAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAP _cell.length_a 44.951 _cell.length_b 102.135 _cell.length_c 128.027 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.269 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 513 n n C1 C6 RET sing 514 n n C1 C16 RET sing 515 n n C1 C17 RET sing 516 n n C2 C3 RET sing 517 n n C2 H21 RET sing 518 n n C2 H22 RET sing 519 n n C3 C4 RET sing 520 n n C3 H31 RET sing 521 n n C3 H32 RET sing 522 n n C4 C5 RET sing 523 n n C4 H41 RET sing 524 n n C4 H42 RET sing 525 n n C5 C6 RET doub 526 n n C5 C18 RET sing 527 n n C6 C7 RET sing 528 n n C7 C8 RET doub 529 e n C7 H7 RET sing 530 n n C8 C9 RET sing 531 n n C8 H8 RET sing 532 n n C9 C10 RET doub 533 e n C9 C19 RET sing 534 n n C10 C11 RET sing 535 n n C10 H10 RET sing 536 n n C11 C12 RET doub 537 e n C11 H11 RET sing 538 n n C12 C13 RET sing 539 n n C12 H12 RET sing 540 n n C13 C14 RET doub 541 e n C13 C20 RET sing 542 n n C14 C15 RET sing 543 n n C14 H14 RET sing 544 n n C15 O1 RET doub 545 n n C15 H15 RET sing 546 n n C16 H161 RET sing 547 n n C16 H162 RET sing 548 n n C16 H163 RET sing 549 n n C17 H171 RET sing 550 n n C17 H172 RET sing 551 n n C17 H173 RET sing 552 n n C18 H181 RET sing 553 n n C18 H182 RET sing 554 n n C18 H183 RET sing 555 n n C19 H191 RET sing 556 n n C19 H192 RET sing 557 n n C19 H193 RET sing 558 n n C20 H201 RET sing 559 n n C20 H202 RET sing 560 n n C20 H203 RET sing 561 n n # _atom_sites.entry_id 3HAP _atom_sites.fract_transf_matrix[1][1] 0.022246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 402 402 D12 D12 . D 3 D12 A 1 403 403 D12 D12 . E 3 D12 A 1 405 405 D12 D12 . F 4 D10 A 1 406 406 D10 D10 . G 4 D10 A 1 409 409 D10 D10 . H 5 R16 A 1 411 411 R16 R16 . I 6 CPS A 1 501 501 CPS CPS . J 4 D10 A 1 250 250 D10 D10 . K 3 D12 A 1 251 251 D12 D12 . L 7 HP6 A 1 401 401 HP6 HP6 . M 3 D12 A 1 252 252 D12 D12 . N 8 DD9 A 1 253 253 DD9 DD9 . O 3 D12 A 1 254 254 D12 D12 . P 3 D12 A 1 255 255 D12 D12 . Q 3 D12 A 1 256 256 D12 D12 . R 4 D10 A 1 257 257 D10 D10 . S 9 HOH A 1 258 258 HOH HOH . S 9 HOH A 2 259 259 HOH HOH . S 9 HOH A 3 260 260 HOH HOH . S 9 HOH A 4 261 261 HOH HOH . S 9 HOH A 5 262 262 HOH HOH . S 9 HOH A 6 263 263 HOH HOH . S 9 HOH A 7 264 264 HOH HOH . S 9 HOH A 8 265 265 HOH HOH . S 9 HOH A 9 266 266 HOH HOH . S 9 HOH A 10 267 267 HOH HOH . S 9 HOH A 11 268 268 HOH HOH . S 9 HOH A 12 269 269 HOH HOH . S 9 HOH A 13 270 270 HOH HOH . S 9 HOH A 14 271 271 HOH HOH . S 9 HOH A 15 272 272 HOH HOH . S 9 HOH A 16 273 273 HOH HOH . S 9 HOH A 17 274 274 HOH HOH . S 9 HOH A 18 275 275 HOH HOH . S 9 HOH A 19 276 276 HOH HOH . S 9 HOH A 20 277 277 HOH HOH . S 9 HOH A 21 278 278 HOH HOH . S 9 HOH A 22 279 279 HOH HOH . S 9 HOH A 23 280 280 HOH HOH . S 9 HOH A 24 281 281 HOH HOH . S 9 HOH A 25 282 282 HOH HOH . S 9 HOH A 26 283 283 HOH HOH . S 9 HOH A 27 284 284 HOH HOH . S 9 HOH A 28 285 285 HOH HOH . S 9 HOH A 29 286 286 HOH HOH . S 9 HOH A 30 287 287 HOH HOH . S 9 HOH A 31 288 288 HOH HOH . S 9 HOH A 32 289 289 HOH HOH . S 9 HOH A 33 290 290 HOH HOH . S 9 HOH A 34 291 291 HOH HOH . S 9 HOH A 35 292 292 HOH HOH . S 9 HOH A 36 293 293 HOH HOH . S 9 HOH A 37 294 294 HOH HOH . S 9 HOH A 38 295 295 HOH HOH . S 9 HOH A 39 296 296 HOH HOH . S 9 HOH A 40 297 297 HOH HOH . S 9 HOH A 41 298 298 HOH HOH . S 9 HOH A 42 299 299 HOH HOH . S 9 HOH A 43 300 300 HOH HOH . S 9 HOH A 44 302 302 HOH HOH . S 9 HOH A 45 303 303 HOH HOH . S 9 HOH A 46 304 304 HOH HOH . S 9 HOH A 47 305 305 HOH HOH . S 9 HOH A 48 306 306 HOH HOH . S 9 HOH A 49 307 307 HOH HOH . S 9 HOH A 50 308 308 HOH HOH . S 9 HOH A 51 309 309 HOH HOH . S 9 HOH A 52 310 310 HOH HOH . S 9 HOH A 53 311 311 HOH HOH . S 9 HOH A 54 312 312 HOH HOH . S 9 HOH A 55 313 313 HOH HOH . S 9 HOH A 56 314 314 HOH HOH . S 9 HOH A 57 315 315 HOH HOH . S 9 HOH A 58 316 316 HOH HOH . S 9 HOH A 59 317 317 HOH HOH . S 9 HOH A 60 318 318 HOH HOH . S 9 HOH A 61 319 319 HOH HOH . S 9 HOH A 62 320 320 HOH HOH . S 9 HOH A 63 321 321 HOH HOH . S 9 HOH A 64 322 322 HOH HOH . S 9 HOH A 65 323 323 HOH HOH . S 9 HOH A 66 324 324 HOH HOH . S 9 HOH A 67 325 325 HOH HOH . S 9 HOH A 68 326 326 HOH HOH . S 9 HOH A 69 327 327 HOH HOH . S 9 HOH A 70 328 328 HOH HOH . S 9 HOH A 71 329 329 HOH HOH . S 9 HOH A 72 330 330 HOH HOH . S 9 HOH A 73 331 331 HOH HOH . S 9 HOH A 74 332 332 HOH HOH . S 9 HOH A 75 333 333 HOH HOH . S 9 HOH A 76 334 334 HOH HOH . S 9 HOH A 77 335 335 HOH HOH . S 9 HOH A 78 336 336 HOH HOH . S 9 HOH A 79 337 337 HOH HOH . S 9 HOH A 80 338 338 HOH HOH . S 9 HOH A 81 339 339 HOH HOH . S 9 HOH A 82 340 340 HOH HOH . S 9 HOH A 83 341 341 HOH HOH . S 9 HOH A 84 342 342 HOH HOH . S 9 HOH A 85 343 343 HOH HOH . S 9 HOH A 86 344 344 HOH HOH . S 9 HOH A 87 345 345 HOH HOH . S 9 HOH A 88 346 346 HOH HOH . S 9 HOH A 89 347 347 HOH HOH . S 9 HOH A 90 348 348 HOH HOH . S 9 HOH A 91 349 349 HOH HOH . S 9 HOH A 92 350 350 HOH HOH . S 9 HOH A 93 351 351 HOH HOH . S 9 HOH A 94 352 352 HOH HOH . S 9 HOH A 95 353 353 HOH HOH . S 9 HOH A 96 354 354 HOH HOH . S 9 HOH A 97 355 355 HOH HOH . S 9 HOH A 98 356 356 HOH HOH . S 9 HOH A 99 357 357 HOH HOH . S 9 HOH A 100 358 358 HOH HOH . S 9 HOH A 101 359 359 HOH HOH . S 9 HOH A 102 360 360 HOH HOH . S 9 HOH A 103 361 361 HOH HOH . S 9 HOH A 104 362 362 HOH HOH . S 9 HOH A 105 363 363 HOH HOH . S 9 HOH A 106 364 364 HOH HOH . S 9 HOH A 107 365 365 HOH HOH . S 9 HOH A 108 366 366 HOH HOH . S 9 HOH A 109 367 367 HOH HOH . S 9 HOH A 110 368 368 HOH HOH . S 9 HOH A 111 369 369 HOH HOH . S 9 HOH A 112 370 370 HOH HOH . S 9 HOH A 113 371 371 HOH HOH . S 9 HOH A 114 372 372 HOH HOH . S 9 HOH A 115 373 373 HOH HOH . S 9 HOH A 116 374 374 HOH HOH . S 9 HOH A 117 375 375 HOH HOH . S 9 HOH A 118 376 376 HOH HOH . S 9 HOH A 119 377 377 HOH HOH . S 9 HOH A 120 378 378 HOH HOH . S 9 HOH A 121 379 379 HOH HOH . S 9 HOH A 122 380 380 HOH HOH . S 9 HOH A 123 381 381 HOH HOH . S 9 HOH A 124 382 382 HOH HOH . S 9 HOH A 125 383 383 HOH HOH . S 9 HOH A 126 384 384 HOH HOH . S 9 HOH A 127 385 385 HOH HOH . S 9 HOH A 128 386 386 HOH HOH . S 9 HOH A 129 387 387 HOH HOH . S 9 HOH A 130 388 388 HOH HOH . S 9 HOH A 131 389 389 HOH HOH . S 9 HOH A 132 390 390 HOH HOH . S 9 HOH A 133 391 391 HOH HOH . S 9 HOH A 134 392 392 HOH HOH . S 9 HOH A 135 393 393 HOH HOH . S 9 HOH A 136 394 394 HOH HOH . S 9 HOH A 137 395 395 HOH HOH . S 9 HOH A 138 396 396 HOH HOH . S 9 HOH A 139 397 397 HOH HOH . S 9 HOH A 140 398 398 HOH HOH . S 9 HOH A 141 399 399 HOH HOH . S 9 HOH A 142 400 400 HOH HOH . S 9 HOH A 143 404 404 HOH HOH . S 9 HOH A 144 407 407 HOH HOH . S 9 HOH A 145 408 408 HOH HOH . S 9 HOH A 146 410 410 HOH HOH . S 9 HOH A 147 412 412 HOH HOH . S 9 HOH A 148 413 413 HOH HOH . S 9 HOH A 149 414 414 HOH HOH . S 9 HOH A 150 415 415 HOH HOH . S 9 HOH A 151 416 416 HOH HOH . S 9 HOH A 152 417 417 HOH HOH . S 9 HOH A 153 418 418 HOH HOH . S 9 HOH A 154 419 419 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 26.245 10.459 -3.065 1 15.09 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 26.589 9.853 -4.41 1 16.79 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 26.977 8.394 -4.328 1 15.38 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 27.74 8.012 -3.047 1 13.94 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 27.016 8.505 -1.812 1 13.07 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 26.255 9.613 -1.798 1 13.29 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 25.606 9.973 -0.491 1 13.22 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 24.59 10.82 -0.34 1 13.25 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 23.932 11.134 0.94 1 12.72 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 23.027 12.129 0.941 1 12.83 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 22.248 12.602 2.082 1 13.11 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 21.297 13.485 1.804 1 14.8 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 20.428 14.121 2.785 1 15.77 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 19.72 15.183 2.313 1 20.39 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 18.827 16.002 3.1 1 20.88 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 26.039 11.991 -2.959 1 14.76 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 24.749 10.253 -3.381 1 13.98 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 27.182 7.652 -0.584 1 16.37 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 24.23 10.318 2.171 1 12.7 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 20.386 13.63 4.203 1 17.18 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 20 #